Wall clock time and date at job start Mon Mar 30 2020 01:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46982 * 2 1 4 4 C 1.53007 * 109.47063 * 240.00222 * 2 1 3 5 5 C 1.50702 * 109.46776 * 59.99673 * 4 2 1 6 6 H 1.07991 * 120.00401 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99328 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00164 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99501 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46867 * 60.00570 * 9 7 5 11 11 H 1.48498 * 109.46882 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47019 * 300.00461 * 9 7 5 13 13 C 1.52994 * 109.47275 * 120.00198 * 2 1 3 14 14 N 1.46498 * 109.47185 * 299.99853 * 13 2 1 15 15 C 1.29426 * 120.00029 * 114.99880 * 14 13 2 16 16 C 1.47395 * 120.00279 * 179.97438 * 15 14 13 17 17 C 1.39808 * 120.16966 * 180.25677 * 16 15 14 18 18 C 1.37782 * 119.99364 * 180.32373 * 17 16 15 19 19 C 1.38508 * 120.34188 * 359.67898 * 18 17 16 20 20 C 1.38491 * 120.33054 * 0.04282 * 19 18 17 21 21 O 1.35999 * 119.99782 * 180.02562 * 20 19 18 22 22 C 1.39103 * 119.99975 * 359.97438 * 20 19 18 23 23 O 1.35804 * 120.16676 * 180.02562 * 22 20 19 24 24 H 1.08999 * 109.47177 * 299.99911 * 1 2 3 25 25 H 1.08993 * 109.47308 * 59.99887 * 1 2 3 26 26 H 1.09007 * 109.46935 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46750 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47081 * 300.00447 * 3 2 1 29 29 H 1.08999 * 109.47092 * 60.00037 * 3 2 1 30 30 H 1.08994 * 109.46892 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.46745 * 299.99684 * 4 2 1 32 32 H 0.96996 * 119.99956 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47342 * 179.97438 * 13 2 1 34 34 H 1.09007 * 109.47281 * 60.00038 * 13 2 1 35 35 H 1.08004 * 119.99740 * 0.02562 * 15 14 13 36 36 H 1.08002 * 119.99793 * 0.02562 * 17 16 15 37 37 H 1.08005 * 119.83075 * 179.70235 * 18 17 16 38 38 H 1.07991 * 119.83766 * 180.02562 * 19 18 17 39 39 H 0.96699 * 114.00458 * 269.98096 * 21 20 19 40 40 H 0.96701 * 113.99732 * 90.00729 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5507 -3.8527 9 14 1.2477 0.3987 -5.2572 10 1 1.7417 1.7991 -5.2571 11 1 1.7438 -0.3005 -6.4697 12 1 -0.2372 0.3976 -5.2571 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 0.7299 -0.6279 3.2472 16 6 0.2391 0.0666 4.4511 17 6 -0.6446 -0.5772 5.3225 18 6 -1.1064 0.0778 6.4432 19 6 -0.6946 1.3717 6.7169 20 6 0.1848 2.0204 5.8661 21 8 0.5851 3.2906 6.1416 22 6 0.6595 1.3724 4.7305 23 8 1.5224 2.0051 3.8942 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6765 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 -0.7208 -1.2495 31 1 1.6767 -1.7489 -1.2493 32 1 2.8621 -1.8817 -4.7337 33 1 3.1300 -0.7217 1.2489 34 1 1.6767 -1.7490 1.2492 35 1 0.4044 -1.6356 3.0347 36 1 -0.9689 -1.5862 5.1145 37 1 -1.7927 -0.4203 7.1121 38 1 -1.0614 1.8773 7.5978 39 1 0.0190 3.9736 5.7567 40 1 2.4541 1.8730 4.1169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806549903.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:05 Heat of formation + Delta-G solvation = -50.719768 kcal Electronic energy + Delta-G solvation = -21220.216467 eV Core-core repulsion = 18000.398751 eV Total energy + Delta-G solvation = -3219.817716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.21658 -37.76412 -36.90469 -36.48432 -34.54292 -32.29344 -30.59726 -29.27777 -27.11416 -26.48369 -26.17182 -23.76779 -22.70077 -22.32779 -20.16986 -18.28030 -18.14034 -17.85093 -16.34703 -16.07752 -15.72898 -15.57626 -14.78612 -14.49013 -14.31045 -14.01781 -13.73654 -13.30939 -12.75577 -12.59363 -12.39998 -12.28695 -12.00394 -11.83742 -11.33337 -11.19194 -10.92992 -10.87548 -10.79300 -10.49538 -10.25080 -10.19577 -10.10313 -9.69055 -9.26326 -8.93935 -8.76592 -8.66232 -8.37223 -8.32466 -5.97131 -3.97423 0.71407 1.03142 2.54886 3.34814 3.39102 3.41772 3.51334 3.93422 4.24945 4.35268 4.48916 4.70183 4.99615 5.03517 5.20865 5.38404 5.48728 5.56070 5.66225 5.78095 5.93475 5.97397 6.07885 6.16766 6.25387 6.27338 6.39744 6.48879 6.55391 6.69823 6.80378 6.83994 7.18279 7.26313 7.30443 7.40261 7.67136 7.81165 7.84500 8.01770 8.07224 8.46938 9.07253 9.65347 11.14538 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034141 B = 0.003477 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.928782 B = 8051.892121 C = 8326.618823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.049 4.049 3 C -0.119 4.119 4 C 0.034 3.966 5 C -0.508 4.508 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.039 3.961 14 N -0.457 5.457 15 C 0.140 3.860 16 C -0.070 4.070 17 C -0.092 4.092 18 C -0.122 4.122 19 C -0.127 4.127 20 C 0.068 3.932 21 O -0.494 6.494 22 C 0.125 3.875 23 O -0.462 6.462 24 H 0.033 0.967 25 H 0.064 0.936 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.016 0.984 31 H 0.013 0.987 32 H 0.260 0.740 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.391 0.609 40 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.318 3.474 21.446 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.050 4.050 3 C -0.176 4.176 4 C -0.003 4.003 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.089 4.089 14 N -0.165 5.165 15 C -0.070 4.070 16 C -0.071 4.071 17 C -0.112 4.112 18 C -0.140 4.140 19 C -0.147 4.147 20 C 0.023 3.977 21 O -0.304 6.304 22 C 0.076 3.924 23 O -0.272 6.272 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.115 0.885 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.247 0.753 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -5.712 4.046 21.036 22.170 hybrid contribution -0.530 -0.428 -1.170 1.353 sum -6.242 3.619 19.866 21.136 Atomic orbital electron populations 1.21751 0.95818 1.00252 1.00641 1.20614 0.94927 0.96172 0.93247 1.21633 0.99701 0.95632 1.00652 1.19143 0.96152 0.94977 0.90032 1.21183 1.30942 1.11954 0.90548 0.92337 1.25009 0.95356 0.95106 0.99049 1.69950 1.37188 1.23180 1.23455 0.86707 0.79170 0.79848 0.82588 1.20265 1.21394 1.20327 1.22731 1.00500 0.95606 0.90103 1.71878 1.07263 1.34547 1.02784 1.23889 0.95029 0.95685 0.92425 1.19304 0.99509 0.92924 0.95411 1.21202 0.96219 1.00067 0.93742 1.20891 1.00813 0.94469 0.97797 1.21408 0.97171 0.96018 1.00060 1.18859 0.98467 0.87049 0.93332 1.84787 1.55647 1.13145 1.76774 1.19036 0.95027 0.90268 0.88038 1.84775 1.18895 1.71684 1.51821 0.94812 0.91726 0.94249 0.94132 0.92590 0.93362 0.96579 0.96862 0.93066 0.89700 0.94364 0.88543 0.84991 0.85251 0.85254 0.75348 0.75222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.06 37.16 0.30 -2.27 16 2 C -0.05 -1.03 0.60 -154.51 -0.09 -1.12 16 3 C -0.12 -2.44 8.06 37.16 0.30 -2.14 16 4 C 0.03 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -14.12 7.65 -34.44 -0.26 -14.39 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.30 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.04 0.71 5.28 -4.05 -0.02 0.69 16 14 N -0.46 -7.33 6.85 -59.08 -0.40 -7.73 16 15 C 0.14 1.92 10.26 -14.84 -0.15 1.77 16 16 C -0.07 -0.85 5.88 -104.92 -0.62 -1.47 16 17 C -0.09 -0.87 9.78 -39.16 -0.38 -1.25 16 18 C -0.12 -1.00 10.02 -39.65 -0.40 -1.40 16 19 C -0.13 -1.15 9.97 -39.39 -0.39 -1.54 16 20 C 0.07 0.75 6.71 -39.17 -0.26 0.49 16 21 O -0.49 -5.08 13.29 -34.29 -0.46 -5.53 16 22 C 0.12 1.58 6.73 -38.60 -0.26 1.32 16 23 O -0.46 -6.33 11.16 -33.68 -0.38 -6.71 16 24 H 0.03 0.63 7.45 -51.93 -0.39 0.25 16 25 H 0.06 1.39 6.62 -51.93 -0.34 1.05 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.22 6.62 -51.93 -0.34 0.88 16 29 H 0.05 0.94 7.60 -51.93 -0.39 0.55 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.04 0.67 7.69 -51.93 -0.40 0.27 16 35 H 0.10 1.18 7.76 -52.48 -0.41 0.77 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.39 2.51 9.06 45.56 0.41 2.92 16 40 H 0.39 4.35 9.06 45.56 0.41 4.76 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -32.55 334.68 -7.20 -39.75 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.26 Total: 3.70 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -2.45 Total: -19.05 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.33 Total: -33.99 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.83 Total: -12.24 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.55 -7.20 -39.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806549903.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.972 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds