Wall clock time and date at job start Mon Mar 30 2020 01:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46982 * 2 1 4 4 C 1.53007 * 109.47063 * 240.00222 * 2 1 3 5 5 C 1.50702 * 109.46776 * 59.99673 * 4 2 1 6 6 H 1.07991 * 120.00401 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99328 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00164 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99501 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46867 * 60.00570 * 9 7 5 11 11 H 1.48498 * 109.46882 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47019 * 300.00461 * 9 7 5 13 13 C 1.52994 * 109.47275 * 120.00198 * 2 1 3 14 14 N 1.46498 * 109.47185 * 299.99853 * 13 2 1 15 15 C 1.29426 * 120.00029 * 114.99880 * 14 13 2 16 16 C 1.47395 * 120.00279 * 179.97438 * 15 14 13 17 17 C 1.39808 * 120.16966 * 180.25677 * 16 15 14 18 18 C 1.37782 * 119.99364 * 180.32373 * 17 16 15 19 19 C 1.38508 * 120.34188 * 359.67898 * 18 17 16 20 20 C 1.38491 * 120.33054 * 0.04282 * 19 18 17 21 21 O 1.35999 * 119.99782 * 180.02562 * 20 19 18 22 22 C 1.39103 * 119.99975 * 359.97438 * 20 19 18 23 23 O 1.35804 * 120.16676 * 180.02562 * 22 20 19 24 24 H 1.08999 * 109.47177 * 299.99911 * 1 2 3 25 25 H 1.08993 * 109.47308 * 59.99887 * 1 2 3 26 26 H 1.09007 * 109.46935 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46750 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47081 * 300.00447 * 3 2 1 29 29 H 1.08999 * 109.47092 * 60.00037 * 3 2 1 30 30 H 1.08994 * 109.46892 * 179.97438 * 4 2 1 31 31 H 1.08999 * 109.46745 * 299.99684 * 4 2 1 32 32 H 0.96996 * 119.99956 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47342 * 179.97438 * 13 2 1 34 34 H 1.09007 * 109.47281 * 60.00038 * 13 2 1 35 35 H 1.08004 * 119.99740 * 0.02562 * 15 14 13 36 36 H 1.08002 * 119.99793 * 0.02562 * 17 16 15 37 37 H 1.08005 * 119.83075 * 179.70235 * 18 17 16 38 38 H 1.07991 * 119.83766 * 180.02562 * 19 18 17 39 39 H 0.96699 * 114.00458 * 269.98096 * 21 20 19 40 40 H 0.96701 * 113.99732 * 90.00729 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5507 -3.8527 9 14 1.2477 0.3987 -5.2572 10 1 1.7417 1.7991 -5.2571 11 1 1.7438 -0.3005 -6.4697 12 1 -0.2372 0.3976 -5.2571 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 0.7299 -0.6279 3.2472 16 6 0.2391 0.0666 4.4511 17 6 -0.6446 -0.5772 5.3225 18 6 -1.1064 0.0778 6.4432 19 6 -0.6946 1.3717 6.7169 20 6 0.1848 2.0204 5.8661 21 8 0.5851 3.2906 6.1416 22 6 0.6595 1.3724 4.7305 23 8 1.5224 2.0051 3.8942 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6765 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 -0.7208 -1.2495 31 1 1.6767 -1.7489 -1.2493 32 1 2.8621 -1.8817 -4.7337 33 1 3.1300 -0.7217 1.2489 34 1 1.6767 -1.7490 1.2492 35 1 0.4044 -1.6356 3.0347 36 1 -0.9689 -1.5862 5.1145 37 1 -1.7927 -0.4203 7.1121 38 1 -1.0614 1.8773 7.5978 39 1 0.0190 3.9736 5.7567 40 1 2.4541 1.8730 4.1169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806549903.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:05 Heat of formation + Delta-G solvation = -73.350869 kcal Electronic energy + Delta-G solvation = -21221.197826 eV Core-core repulsion = 18000.398751 eV Total energy + Delta-G solvation = -3220.799074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02452 -39.20081 -37.87389 -37.32556 -35.92321 -34.30620 -31.57391 -30.05651 -29.08657 -28.04602 -27.68001 -25.36512 -23.90971 -23.28462 -21.21306 -19.60737 -19.11821 -18.90015 -18.36339 -17.15046 -16.63921 -16.52255 -16.38161 -15.70561 -15.61178 -15.46343 -14.77859 -14.73447 -14.40144 -13.96875 -13.67717 -13.50317 -13.17201 -13.00173 -12.84697 -12.73363 -12.65897 -12.47307 -12.33175 -12.10097 -12.07878 -11.64192 -11.43549 -11.13495 -11.00458 -10.81370 -10.53083 -10.00279 -9.44493 -9.35105 -8.16858 -6.24374 -0.13182 0.28461 1.38988 1.41398 1.48840 1.58338 2.41737 2.71850 3.13302 3.16700 3.25504 3.53452 3.91587 4.02116 4.16609 4.23370 4.27015 4.33698 4.50929 4.59459 4.70548 4.80599 4.82321 4.90638 4.98912 5.07687 5.11177 5.14666 5.37015 5.40815 5.43036 5.46126 5.48346 5.51118 5.62420 5.78051 5.82871 5.87205 6.30262 6.73368 6.88332 6.94206 7.01476 7.42821 8.95197 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034141 B = 0.003477 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.928782 B = 8051.892121 C = 8326.618823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.047 4.047 3 C -0.106 4.106 4 C 0.043 3.957 5 C -0.519 4.519 6 H 0.062 0.938 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.956 3.044 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.050 3.950 14 N -0.485 5.485 15 C 0.157 3.843 16 C -0.096 4.096 17 C -0.085 4.085 18 C -0.114 4.114 19 C -0.120 4.120 20 C 0.055 3.945 21 O -0.505 6.505 22 C 0.103 3.897 23 O -0.481 6.481 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.040 0.960 27 H 0.034 0.966 28 H 0.038 0.962 29 H 0.060 0.940 30 H -0.012 1.012 31 H -0.012 1.012 32 H 0.261 0.739 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.114 0.886 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.153 0.847 39 H 0.405 0.595 40 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.375 3.820 23.352 25.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.047 4.047 3 C -0.163 4.163 4 C 0.005 3.995 5 C -0.557 4.557 6 H 0.080 0.920 7 C -0.198 4.198 8 N -0.577 5.577 9 Si 0.781 3.219 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.079 4.079 14 N -0.193 5.193 15 C -0.052 4.052 16 C -0.097 4.097 17 C -0.105 4.105 18 C -0.132 4.132 19 C -0.139 4.139 20 C 0.010 3.990 21 O -0.317 6.317 22 C 0.054 3.946 23 O -0.292 6.292 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.006 0.994 31 H 0.007 0.993 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.131 0.869 36 H 0.175 0.825 37 H 0.182 0.818 38 H 0.170 0.830 39 H 0.263 0.737 40 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -7.784 4.410 22.955 24.636 hybrid contribution 0.040 -0.546 -1.563 1.656 sum -7.743 3.864 21.392 23.076 Atomic orbital electron populations 1.21606 0.94982 1.00266 1.00410 1.20453 0.95512 0.96032 0.92750 1.21489 0.99262 0.95330 1.00252 1.18991 0.94253 0.94063 0.92183 1.21543 1.30625 1.12002 0.91532 0.91994 1.25897 0.95578 0.95865 1.02476 1.70086 1.38564 1.24782 1.24239 0.85630 0.78959 0.78771 0.78498 1.19453 1.21021 1.19282 1.22415 1.00048 0.95282 0.90156 1.71952 1.09882 1.34542 1.02913 1.24347 0.92701 0.96233 0.91962 1.19378 1.01405 0.93200 0.95761 1.21539 0.94780 1.00999 0.93158 1.21311 1.00374 0.93988 0.97536 1.21751 0.95792 0.96356 0.99992 1.19014 0.99138 0.87423 0.93426 1.84746 1.56592 1.13469 1.76923 1.19340 0.95451 0.90925 0.88845 1.84737 1.19538 1.72165 1.52743 0.93291 0.93459 0.94090 0.94649 0.94281 0.92143 0.99375 0.99321 0.93001 0.90642 0.94332 0.86879 0.82518 0.81761 0.82968 0.73698 0.74739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.64 8.06 71.98 0.58 -4.06 16 2 C -0.05 -2.01 0.60 -52.18 -0.03 -2.04 16 3 C -0.11 -4.43 8.06 71.98 0.58 -3.85 16 4 C 0.04 2.27 4.04 29.85 0.12 2.39 16 5 C -0.52 -29.46 7.65 25.60 0.20 -29.26 16 6 H 0.06 3.41 5.68 -2.92 -0.02 3.40 16 7 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 8 N -0.94 -57.57 13.29 21.45 0.28 -57.29 16 9 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 13 C 0.05 1.84 5.28 86.38 0.46 2.30 16 14 N -0.49 -15.37 6.85 -340.84 -2.34 -17.70 16 15 C 0.16 4.09 10.26 87.46 0.90 4.99 16 16 C -0.10 -2.15 5.88 -20.06 -0.12 -2.26 16 17 C -0.08 -1.30 9.78 22.54 0.22 -1.08 16 18 C -0.11 -1.39 10.02 22.23 0.22 -1.17 16 19 C -0.12 -1.76 9.97 22.39 0.22 -1.53 16 20 C 0.05 1.11 6.71 22.54 0.15 1.27 16 21 O -0.51 -9.73 13.29 -79.63 -1.06 -10.79 16 22 C 0.10 2.48 6.73 22.90 0.15 2.64 16 23 O -0.48 -13.18 11.16 -77.44 -0.86 -14.05 16 24 H 0.05 1.80 7.45 -2.39 -0.02 1.78 16 25 H 0.05 2.03 6.62 -2.39 -0.02 2.02 16 26 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.03 1.46 8.14 -2.39 -0.02 1.45 16 28 H 0.04 1.72 6.62 -2.39 -0.02 1.70 16 29 H 0.06 2.36 7.60 -2.39 -0.02 2.34 16 30 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.04 1.36 7.69 -2.38 -0.02 1.35 16 35 H 0.11 2.51 7.76 -2.91 -0.02 2.49 16 36 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 37 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 38 H 0.15 1.52 8.06 -2.92 -0.02 1.49 16 39 H 0.41 4.72 9.06 -74.06 -0.67 4.05 16 40 H 0.39 9.09 9.06 -74.06 -0.67 8.42 16 Total: -1.00 -71.06 334.68 1.88 -69.17 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -0.28 Total: 14.84 kcal Atomic # 6 Polarization: -35.39 SS G_CDS: 4.11 Total: -31.27 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -2.05 Total: -74.99 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -1.92 Total: -24.83 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -71.06 1.88 -69.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806549903.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.177 kcal (2) G-P(sol) polarization free energy of solvation -71.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds