Wall clock time and date at job start Mon Mar 30 2020 01:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52989 * 109.47431 * 2 1 4 4 C 1.53003 * 109.47195 * 239.99839 * 2 1 3 5 5 C 1.50698 * 109.47051 * 60.00230 * 4 2 1 6 6 H 1.07999 * 119.99958 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00089 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99961 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00090 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47168 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46790 * 119.99908 * 9 7 5 12 12 H 1.48497 * 109.47157 * 239.99660 * 9 7 5 13 13 C 1.53005 * 109.46895 * 120.00132 * 2 1 3 14 14 N 1.46498 * 109.46986 * 299.99908 * 13 2 1 15 15 C 1.29428 * 119.99966 * 123.72786 * 14 13 2 16 16 C 1.47382 * 120.00205 * 13.68252 * 15 14 13 17 17 C 1.39816 * 120.16567 * 29.45853 * 16 15 14 18 18 C 1.37786 * 119.99145 * 179.76339 * 17 16 15 19 19 C 1.38508 * 120.34200 * 0.51753 * 18 17 16 20 20 C 1.38480 * 120.33572 * 359.73635 * 19 18 17 21 21 O 1.35999 * 120.00269 * 180.02562 * 20 19 18 22 22 C 1.39116 * 119.99982 * 0.02562 * 20 19 18 23 23 O 1.35797 * 120.17192 * 179.97438 * 22 20 19 24 24 H 1.09000 * 109.46857 * 300.00423 * 1 2 3 25 25 H 1.09005 * 109.46656 * 60.00033 * 1 2 3 26 26 H 1.08998 * 109.47498 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47639 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47289 * 300.00192 * 3 2 1 29 29 H 1.09009 * 109.47415 * 59.99665 * 3 2 1 30 30 H 1.08995 * 109.47074 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.46999 * 300.00295 * 4 2 1 32 32 H 0.97002 * 119.99890 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.46934 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.47295 * 59.99707 * 13 2 1 35 35 H 1.08001 * 119.99743 * 193.68965 * 15 14 13 36 36 H 1.07995 * 119.99802 * 0.02562 * 17 16 15 37 37 H 1.08006 * 119.82683 * 180.22559 * 18 17 16 38 38 H 1.08000 * 119.83264 * 179.71709 * 19 18 17 39 39 H 0.96705 * 113.99755 * 269.97311 * 21 20 19 40 40 H 0.96701 * 113.99910 * 265.07927 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8704 -0.4822 -3.7319 8 7 2.6265 -1.5515 -3.8526 9 14 1.2472 0.3980 -5.2572 10 1 0.4229 1.5651 -4.8531 11 1 2.4020 0.8645 -6.0660 12 1 0.4220 -0.5357 -6.0650 13 6 2.0400 -0.7213 1.2493 14 7 1.5516 -0.0307 2.4454 15 6 0.8681 -0.6787 3.3331 16 6 0.8334 -2.1519 3.3054 17 6 1.9214 -2.8710 2.8015 18 6 1.8871 -4.2483 2.7818 19 6 0.7741 -4.9272 3.2495 20 6 -0.3134 -4.2288 3.7467 21 8 -1.4025 -4.9023 4.2047 22 6 -0.2918 -2.8381 3.7778 23 8 -1.3565 -2.1497 4.2641 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7217 -1.2490 31 1 1.6767 -1.7490 -1.2492 32 1 2.8602 -1.8833 -4.7336 33 1 3.1299 -0.7217 1.2491 34 1 1.6766 -1.7490 1.2493 35 1 0.3231 -0.1399 4.0941 36 1 2.7903 -2.3470 2.4316 37 1 2.7306 -4.8012 2.3953 38 1 0.7542 -6.0068 3.2260 39 1 -2.0723 -5.0732 3.5284 40 1 -1.9820 -1.8616 3.5853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806549904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:08 Heat of formation + Delta-G solvation = -43.578070 kcal Electronic energy + Delta-G solvation = -21618.118501 eV Core-core repulsion = 18398.610473 eV Total energy + Delta-G solvation = -3219.508029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.47087 -38.16248 -37.08882 -36.47387 -34.69172 -32.30591 -30.06705 -29.44244 -27.33210 -26.68187 -26.30279 -23.80225 -22.81230 -22.48887 -20.18381 -18.74487 -17.94263 -17.73680 -16.49307 -16.26305 -16.03336 -15.34408 -14.69555 -14.65759 -14.47760 -14.22007 -13.87340 -13.24289 -12.83268 -12.59358 -12.48660 -12.18412 -12.05118 -11.86956 -11.42845 -11.21204 -10.96978 -10.79986 -10.79362 -10.57643 -10.45691 -10.24617 -10.14078 -9.69521 -9.30918 -8.97289 -8.96082 -8.60076 -8.37034 -8.35132 -6.01166 -4.01365 0.72479 1.02576 2.43147 3.29201 3.37291 3.40738 3.42389 3.93968 3.98006 4.44227 4.58674 4.70066 4.82282 5.04300 5.17091 5.34899 5.49121 5.58426 5.64328 5.72181 5.91601 5.93168 6.07223 6.14723 6.20875 6.29936 6.42924 6.48049 6.51452 6.62129 6.74422 6.78039 7.13444 7.20942 7.21444 7.24910 7.61865 7.63338 7.76908 7.95877 8.00000 8.42988 9.03744 9.61789 11.10540 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021477 B = 0.004378 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.380763 B = 6393.839813 C = 6801.918056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.048 4.048 3 C -0.120 4.120 4 C 0.035 3.965 5 C -0.507 4.507 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.021 3.979 14 N -0.480 5.480 15 C 0.161 3.839 16 C -0.122 4.122 17 C -0.090 4.090 18 C -0.114 4.114 19 C -0.121 4.121 20 C 0.074 3.926 21 O -0.489 6.489 22 C 0.107 3.893 23 O -0.484 6.484 24 H 0.034 0.966 25 H 0.063 0.937 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.015 0.985 31 H 0.013 0.987 32 H 0.259 0.741 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.159 0.841 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.386 0.614 40 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 -4.849 14.341 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.048 4.048 3 C -0.177 4.177 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.107 4.107 14 N -0.185 5.185 15 C -0.051 4.051 16 C -0.125 4.125 17 C -0.110 4.110 18 C -0.132 4.132 19 C -0.140 4.140 20 C 0.029 3.971 21 O -0.299 6.299 22 C 0.059 3.941 23 O -0.294 6.294 24 H 0.053 0.947 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.176 0.824 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.242 0.758 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -4.573 -4.115 14.969 16.184 hybrid contribution -0.857 -0.552 -1.896 2.153 sum -5.430 -4.667 13.073 14.905 Atomic orbital electron populations 1.21715 0.95806 1.00084 1.00556 1.20602 0.95020 0.96005 0.93215 1.21644 0.99726 0.95894 1.00467 1.19138 0.96112 0.95001 0.90029 1.21248 1.30848 1.11916 0.90498 0.92211 1.25006 0.95349 0.95101 0.99062 1.69971 1.37280 1.23205 1.23248 0.86603 0.78659 0.79747 0.83419 1.19739 1.21091 1.21145 1.23176 1.00131 0.97388 0.90027 1.72094 1.05858 1.39157 1.01430 1.24675 0.94057 0.88148 0.98179 1.20395 0.94888 0.96250 1.01013 1.21553 0.98270 0.94333 0.96801 1.21014 0.98370 0.94022 0.99764 1.21426 0.93547 1.00676 0.98360 1.18648 0.89544 0.89084 0.99846 1.84904 1.29886 1.76444 1.38644 1.18845 0.88756 0.88967 0.97524 1.84792 1.34363 1.74012 1.36239 0.94710 0.91780 0.94472 0.94146 0.92378 0.93843 0.96648 0.96866 0.93176 0.90285 0.91958 0.82402 0.84527 0.84839 0.84919 0.75820 0.75374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.06 37.16 0.30 -2.08 16 2 C -0.05 -0.97 0.60 -154.51 -0.09 -1.06 16 3 C -0.12 -2.38 8.06 37.15 0.30 -2.08 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.74 7.65 -34.44 -0.26 -14.00 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.02 0.36 3.41 -4.04 -0.01 0.35 16 14 N -0.48 -7.59 9.05 -59.09 -0.53 -8.12 16 15 C 0.16 2.14 10.69 -14.84 -0.16 1.98 16 16 C -0.12 -1.59 5.28 -104.92 -0.55 -2.15 16 17 C -0.09 -1.17 7.34 -39.16 -0.29 -1.46 16 18 C -0.11 -1.30 10.02 -39.65 -0.40 -1.70 16 19 C -0.12 -1.32 9.97 -39.39 -0.39 -1.72 16 20 C 0.07 0.87 6.71 -39.17 -0.26 0.60 16 21 O -0.49 -5.10 13.29 -34.29 -0.46 -5.56 16 22 C 0.11 1.30 6.73 -38.59 -0.26 1.04 16 23 O -0.48 -5.19 12.67 -33.65 -0.43 -5.62 16 24 H 0.03 0.60 7.60 -51.93 -0.39 0.20 16 25 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.22 6.62 -51.93 -0.34 0.87 16 29 H 0.04 0.80 7.61 -51.92 -0.39 0.40 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.08 1.39 7.86 -51.93 -0.41 0.98 16 34 H 0.06 1.07 4.47 -51.93 -0.23 0.83 16 35 H 0.16 1.77 7.96 -52.49 -0.42 1.36 16 36 H 0.14 1.82 5.75 -52.49 -0.30 1.52 16 37 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.39 2.20 9.06 45.56 0.41 2.62 16 40 H 0.39 2.60 9.06 45.56 0.41 3.01 16 LS Contribution 328.47 15.07 4.95 4.95 Total: -1.00 -32.53 328.47 -7.03 -39.56 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -3.98 Total: 4.21 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -2.29 Total: -20.06 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.20 Total: -33.83 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.88 Total: -11.18 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.53 -7.03 -39.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806549904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.022 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds