Wall clock time and date at job start Mon Mar 30 2020 01:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52989 * 109.47431 * 2 1 4 4 C 1.53003 * 109.47195 * 239.99839 * 2 1 3 5 5 C 1.50698 * 109.47051 * 60.00230 * 4 2 1 6 6 H 1.07999 * 119.99958 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00089 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99961 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00090 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47168 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46790 * 119.99908 * 9 7 5 12 12 H 1.48497 * 109.47157 * 239.99660 * 9 7 5 13 13 C 1.53005 * 109.46895 * 120.00132 * 2 1 3 14 14 N 1.46498 * 109.46986 * 299.99908 * 13 2 1 15 15 C 1.29428 * 119.99966 * 123.72786 * 14 13 2 16 16 C 1.47382 * 120.00205 * 13.68252 * 15 14 13 17 17 C 1.39816 * 120.16567 * 29.45853 * 16 15 14 18 18 C 1.37786 * 119.99145 * 179.76339 * 17 16 15 19 19 C 1.38508 * 120.34200 * 0.51753 * 18 17 16 20 20 C 1.38480 * 120.33572 * 359.73635 * 19 18 17 21 21 O 1.35999 * 120.00269 * 180.02562 * 20 19 18 22 22 C 1.39116 * 119.99982 * 0.02562 * 20 19 18 23 23 O 1.35797 * 120.17192 * 179.97438 * 22 20 19 24 24 H 1.09000 * 109.46857 * 300.00423 * 1 2 3 25 25 H 1.09005 * 109.46656 * 60.00033 * 1 2 3 26 26 H 1.08998 * 109.47498 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47639 * 179.97438 * 3 2 1 28 28 H 1.09006 * 109.47289 * 300.00192 * 3 2 1 29 29 H 1.09009 * 109.47415 * 59.99665 * 3 2 1 30 30 H 1.08995 * 109.47074 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.46999 * 300.00295 * 4 2 1 32 32 H 0.97002 * 119.99890 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.46934 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.47295 * 59.99707 * 13 2 1 35 35 H 1.08001 * 119.99743 * 193.68965 * 15 14 13 36 36 H 1.07995 * 119.99802 * 0.02562 * 17 16 15 37 37 H 1.08006 * 119.82683 * 180.22559 * 18 17 16 38 38 H 1.08000 * 119.83264 * 179.71709 * 19 18 17 39 39 H 0.96705 * 113.99755 * 269.97311 * 21 20 19 40 40 H 0.96701 * 113.99910 * 265.07927 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8704 -0.4822 -3.7319 8 7 2.6265 -1.5515 -3.8526 9 14 1.2472 0.3980 -5.2572 10 1 0.4229 1.5651 -4.8531 11 1 2.4020 0.8645 -6.0660 12 1 0.4220 -0.5357 -6.0650 13 6 2.0400 -0.7213 1.2493 14 7 1.5516 -0.0307 2.4454 15 6 0.8681 -0.6787 3.3331 16 6 0.8334 -2.1519 3.3054 17 6 1.9214 -2.8710 2.8015 18 6 1.8871 -4.2483 2.7818 19 6 0.7741 -4.9272 3.2495 20 6 -0.3134 -4.2288 3.7467 21 8 -1.4025 -4.9023 4.2047 22 6 -0.2918 -2.8381 3.7778 23 8 -1.3565 -2.1497 4.2641 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7217 -1.2490 31 1 1.6767 -1.7490 -1.2492 32 1 2.8602 -1.8833 -4.7336 33 1 3.1299 -0.7217 1.2491 34 1 1.6766 -1.7490 1.2493 35 1 0.3231 -0.1399 4.0941 36 1 2.7903 -2.3470 2.4316 37 1 2.7306 -4.8012 2.3953 38 1 0.7542 -6.0068 3.2260 39 1 -2.0723 -5.0732 3.5284 40 1 -1.9820 -1.8616 3.5853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806549904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:08 Heat of formation + Delta-G solvation = -67.122788 kcal Electronic energy + Delta-G solvation = -21619.139477 eV Core-core repulsion = 18398.610473 eV Total energy + Delta-G solvation = -3220.529004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.38823 -39.41173 -37.97085 -37.58694 -35.97974 -34.31545 -31.08765 -30.34753 -29.16773 -28.14904 -27.88247 -25.40267 -24.11364 -23.48584 -21.26940 -19.96484 -18.96463 -18.82956 -18.32947 -17.44613 -16.97338 -16.64778 -16.22345 -15.87962 -15.59068 -15.36922 -15.17112 -14.70276 -14.43334 -13.97002 -13.90468 -13.42641 -13.21369 -13.14387 -12.86467 -12.69605 -12.64405 -12.39650 -12.31362 -12.25925 -11.98690 -11.68073 -11.44676 -11.24795 -11.00444 -10.79338 -10.52761 -10.19129 -9.53234 -9.44095 -8.15933 -6.22873 -0.22583 0.13901 1.38426 1.39023 1.41134 1.52485 2.42462 2.52977 3.07722 3.18219 3.21427 3.47459 3.66761 3.90533 4.08051 4.14794 4.19149 4.30469 4.36291 4.64984 4.73864 4.76101 4.79428 4.86160 4.97736 5.01583 5.13137 5.14262 5.18726 5.28694 5.42143 5.45669 5.49182 5.51985 5.64893 5.66686 5.80850 5.89185 6.31800 6.58812 6.83114 6.91768 6.92459 7.44541 8.96506 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021477 B = 0.004378 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.380763 B = 6393.839813 C = 6801.918056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.048 4.048 3 C -0.111 4.111 4 C 0.044 3.956 5 C -0.515 4.515 6 H 0.064 0.936 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.954 3.046 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.280 1.280 13 C 0.035 3.965 14 N -0.508 5.508 15 C 0.184 3.816 16 C -0.142 4.142 17 C -0.106 4.106 18 C -0.120 4.120 19 C -0.118 4.118 20 C 0.070 3.930 21 O -0.497 6.497 22 C 0.109 3.891 23 O -0.489 6.489 24 H 0.057 0.943 25 H 0.046 0.954 26 H 0.035 0.965 27 H 0.032 0.968 28 H 0.042 0.958 29 H 0.061 0.939 30 H -0.014 1.014 31 H -0.012 1.012 32 H 0.260 0.740 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.184 0.816 36 H 0.126 0.874 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.407 0.593 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.286 -4.757 15.295 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.048 4.048 3 C -0.168 4.168 4 C 0.006 3.994 5 C -0.553 4.553 6 H 0.082 0.918 7 C -0.198 4.198 8 N -0.577 5.577 9 Si 0.780 3.220 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.206 1.206 13 C -0.094 4.094 14 N -0.213 5.213 15 C -0.026 4.026 16 C -0.145 4.145 17 C -0.126 4.126 18 C -0.138 4.138 19 C -0.137 4.137 20 C 0.024 3.976 21 O -0.310 6.310 22 C 0.061 3.939 23 O -0.302 6.302 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.004 0.996 31 H 0.006 0.994 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.201 0.799 36 H 0.144 0.856 37 H 0.167 0.833 38 H 0.173 0.827 39 H 0.266 0.734 40 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -6.256 -4.012 15.921 17.570 hybrid contribution -0.414 -0.688 -2.072 2.222 sum -6.671 -4.700 13.848 16.074 Atomic orbital electron populations 1.21582 0.94656 1.00050 1.00764 1.20464 0.95891 0.95882 0.92577 1.21546 0.99190 0.95600 1.00512 1.18978 0.94126 0.94068 0.92225 1.21602 1.30391 1.11901 0.91419 0.91815 1.25871 0.95622 0.95858 1.02411 1.70101 1.38711 1.24822 1.24036 0.85549 0.78174 0.78842 0.79435 1.18617 1.20831 1.20630 1.22836 0.99420 0.97107 0.90006 1.72098 1.08401 1.38973 1.01862 1.25097 0.91665 0.88616 0.97198 1.20413 0.95570 0.96106 1.02378 1.21600 0.98288 0.95202 0.97480 1.21239 0.99259 0.93614 0.99679 1.21695 0.92872 1.01842 0.97256 1.18762 0.90177 0.89097 0.99521 1.84851 1.30126 1.76131 1.39854 1.18872 0.88836 0.89342 0.96846 1.84744 1.34322 1.73883 1.37207 0.92387 0.93463 0.94616 0.94908 0.93900 0.91968 0.99581 0.99392 0.93087 0.91491 0.91850 0.79900 0.85644 0.83332 0.82743 0.73404 0.73242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.24 8.06 71.98 0.58 -3.66 16 2 C -0.05 -1.95 0.60 -52.18 -0.03 -1.98 16 3 C -0.11 -4.41 8.06 71.98 0.58 -3.83 16 4 C 0.04 2.25 4.04 29.85 0.12 2.37 16 5 C -0.52 -28.38 7.65 25.60 0.20 -28.18 16 6 H 0.06 3.40 5.68 -2.91 -0.02 3.39 16 7 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 8 N -0.94 -56.36 13.29 21.45 0.28 -56.07 16 9 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 13 C 0.03 1.22 3.41 86.38 0.29 1.52 16 14 N -0.51 -15.46 9.05 -340.85 -3.09 -18.54 16 15 C 0.18 4.56 10.69 87.46 0.93 5.50 16 16 C -0.14 -3.49 5.28 -20.06 -0.11 -3.60 16 17 C -0.11 -2.71 7.34 22.54 0.17 -2.55 16 18 C -0.12 -2.63 10.02 22.23 0.22 -2.41 16 19 C -0.12 -2.34 9.97 22.39 0.22 -2.12 16 20 C 0.07 1.48 6.71 22.54 0.15 1.63 16 21 O -0.50 -9.05 13.29 -79.63 -1.06 -10.11 16 22 C 0.11 2.42 6.73 22.91 0.15 2.58 16 23 O -0.49 -9.14 12.67 -77.36 -0.98 -10.12 16 24 H 0.06 1.89 7.60 -2.39 -0.02 1.87 16 25 H 0.05 1.90 6.62 -2.38 -0.02 1.89 16 26 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.79 6.62 -2.38 -0.02 1.77 16 29 H 0.06 2.21 7.61 -2.38 -0.02 2.19 16 30 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 31 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 32 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 33 H 0.07 2.45 7.86 -2.39 -0.02 2.43 16 34 H 0.06 2.20 4.47 -2.38 -0.01 2.19 16 35 H 0.18 3.55 7.96 -2.91 -0.02 3.52 16 36 H 0.13 3.44 5.75 -2.91 -0.02 3.42 16 37 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 38 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 39 H 0.41 3.51 9.06 -74.05 -0.67 2.84 16 40 H 0.41 4.25 9.06 -74.06 -0.67 3.57 16 Total: -1.00 -69.74 328.47 0.87 -68.88 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -0.27 Total: 14.21 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: 3.95 Total: -34.31 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -2.80 Total: -74.61 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -2.04 Total: -20.23 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -69.74 0.87 -68.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806549904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.753 kcal (2) G-P(sol) polarization free energy of solvation -69.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds