Wall clock time and date at job start Mon Mar 30 2020 01:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 C 1.52999 * 109.47021 * 240.00154 * 2 1 3 5 5 C 1.50697 * 109.47481 * 60.00152 * 4 2 1 6 6 O 1.20833 * 119.99791 * 359.97438 * 5 4 2 7 7 O 1.34223 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.46892 * 109.46996 * 120.00030 * 2 1 3 9 9 C 1.46904 * 111.00335 * 300.00122 * 8 2 1 10 10 C 1.50706 * 109.47200 * 180.02562 * 9 8 2 11 11 C 1.38632 * 119.74447 * 269.72385 * 10 9 8 12 12 C 1.37617 * 120.24259 * 179.72332 * 11 10 9 13 13 C 1.40723 * 119.74450 * 0.57032 * 12 11 10 14 14 C 1.41398 * 120.23981 * 179.68073 * 13 12 11 15 15 H 1.08005 * 119.99550 * 204.40770 * 14 13 12 16 16 C 1.39939 * 120.00283 * 24.41289 * 14 13 12 17 17 N 1.30820 * 120.00244 * 17.84078 * 16 14 13 18 18 Si 1.86804 * 120.00028 * 197.84457 * 16 14 13 19 19 H 1.48498 * 109.47075 * 59.99556 * 18 16 14 20 20 H 1.48499 * 109.46991 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47231 * 299.99662 * 18 16 14 22 22 C 1.40709 * 119.51285 * 359.70769 * 13 12 11 23 23 C 1.37616 * 119.74556 * 359.97438 * 22 13 12 24 24 H 1.08998 * 109.47328 * 300.00189 * 1 2 3 25 25 H 1.09000 * 109.47163 * 59.99966 * 1 2 3 26 26 H 1.09005 * 109.47497 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47145 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47126 * 300.00057 * 3 2 1 29 29 H 1.09007 * 109.46997 * 59.99890 * 3 2 1 30 30 H 1.09003 * 109.46758 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47182 * 299.99850 * 4 2 1 32 32 H 0.96704 * 117.00099 * 180.02562 * 7 5 4 33 33 H 1.00906 * 111.00654 * 176.04538 * 8 2 1 34 34 H 1.08995 * 109.46834 * 59.99941 * 9 8 2 35 35 H 1.09002 * 109.46798 * 299.99774 * 9 8 2 36 36 H 1.07995 * 119.87943 * 359.97438 * 11 10 9 37 37 H 1.07998 * 120.12987 * 180.28328 * 12 11 10 38 38 H 0.96997 * 120.00535 * 180.02562 * 17 16 14 39 39 H 1.07994 * 120.12670 * 179.97438 * 22 13 12 40 40 H 1.07994 * 119.87962 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 8 0.8426 0.9714 -2.3689 7 8 1.8615 -0.4697 -3.6988 8 7 2.0196 -0.6925 1.1994 9 6 1.5485 -0.0264 2.4211 10 6 2.0702 -0.7631 3.6279 11 6 1.3231 -1.7908 4.1824 12 6 1.7922 -2.4741 5.2810 13 6 3.0297 -2.1181 5.8486 14 6 3.5186 -2.8086 6.9815 15 1 4.2218 -2.3275 7.6452 16 6 3.0914 -4.1154 7.2426 17 7 2.5344 -4.8234 6.2940 18 14 3.3164 -4.8488 8.9458 19 1 2.5821 -4.0258 9.9401 20 1 2.7846 -6.2352 8.9620 21 1 4.7610 -4.8683 9.2896 22 6 3.7767 -1.0694 5.2808 23 6 3.2910 -0.4043 4.1783 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7216 -1.2490 31 1 1.6766 -1.7489 -1.2493 32 1 1.5161 0.0196 -4.4581 33 1 3.0262 -0.7626 1.1910 34 1 0.4587 -0.0266 2.4378 35 1 1.9121 1.0011 2.4379 36 1 0.3713 -2.0588 3.7483 37 1 1.2108 -3.2774 5.7087 38 1 2.2380 -5.7291 6.4750 39 1 4.7274 -0.7877 5.7086 40 1 3.8627 0.4006 3.7405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833456304.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:51 Heat of formation + Delta-G solvation = -78.445352 kcal Electronic energy + Delta-G solvation = -21042.512399 eV Core-core repulsion = 17821.492411 eV Total energy + Delta-G solvation = -3221.019987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.73653 -38.30388 -37.23442 -36.11731 -33.90121 -32.00883 -29.58098 -29.16844 -28.43354 -27.23878 -26.16161 -23.52896 -21.94791 -20.93125 -19.81823 -19.09287 -18.28336 -17.27172 -16.67973 -16.15410 -15.65173 -15.26732 -14.55120 -14.30011 -13.94178 -13.82990 -13.37125 -13.17400 -12.98117 -12.69405 -12.42429 -12.10899 -11.96097 -11.89508 -11.58598 -11.48322 -11.13367 -11.04376 -11.01658 -10.88030 -10.68903 -10.49231 -10.34129 -10.24567 -9.58070 -9.33972 -9.10014 -8.03637 -7.41476 -7.27804 -6.73838 -4.32987 2.03134 2.72210 2.88511 3.07150 3.09858 3.10760 3.22498 3.94164 4.48970 4.57332 4.77624 4.87149 5.13114 5.30627 5.44199 5.55130 5.70212 5.74404 5.88649 5.92204 5.93766 6.03686 6.08232 6.20764 6.31315 6.38794 6.42124 6.47097 6.58843 6.98627 7.09177 7.32340 7.38397 7.41609 7.63949 7.72841 7.74298 7.92472 8.07967 8.18185 8.32863 8.67151 8.91845 9.00634 10.20350 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039114 B = 0.003156 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.680494 B = 8870.218578 C = 9096.382672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.121 3.879 3 C -0.195 4.195 4 C -0.104 4.104 5 C 0.482 3.518 6 O -0.508 6.508 7 O -0.519 6.519 8 N -0.672 5.672 9 C 0.123 3.877 10 C -0.213 4.213 11 C -0.079 4.079 12 C -0.168 4.168 13 C 0.113 3.887 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.076 3.924 17 N -0.791 5.791 18 Si 0.907 3.093 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.266 1.266 22 C -0.228 4.228 23 C -0.085 4.085 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.407 0.593 33 H 0.339 0.661 34 H 0.066 0.934 35 H 0.024 0.976 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.281 0.719 39 H 0.089 0.911 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.884 6.004 -13.642 15.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.030 3.970 3 C -0.254 4.254 4 C -0.142 4.142 5 C 0.325 3.675 6 O -0.396 6.396 7 O -0.331 6.331 8 N -0.303 5.303 9 C -0.004 4.004 10 C -0.215 4.215 11 C -0.098 4.098 12 C -0.187 4.187 13 C 0.110 3.890 14 C -0.494 4.494 15 H 0.094 0.906 16 C -0.141 4.141 17 N -0.416 5.416 18 Si 0.731 3.269 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.247 4.247 23 C -0.104 4.104 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.133 0.867 32 H 0.266 0.734 33 H 0.158 0.842 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.105 0.895 37 H 0.134 0.866 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.529 5.341 -13.318 14.570 hybrid contribution 0.581 0.610 0.244 0.877 sum -1.948 5.951 -13.074 14.496 Atomic orbital electron populations 1.22117 0.93470 1.02311 1.02994 1.20634 0.96182 0.91134 0.89063 1.22796 1.00442 0.98238 1.03879 1.21399 1.03095 1.01411 0.88328 1.23523 0.76930 0.82401 0.84669 1.90621 1.35880 1.26349 1.86783 1.84566 1.72432 1.59099 1.16992 1.60792 1.16247 1.52939 1.00356 1.20641 0.99056 0.93766 0.86979 1.18919 0.98578 1.03666 1.00313 1.20499 0.97817 0.95192 0.96269 1.21313 0.96890 1.01989 0.98501 1.17614 0.90291 0.89981 0.91114 1.19563 1.23710 0.97799 1.08322 0.90593 1.25899 0.93020 0.97108 0.98121 1.69822 1.29814 1.09477 1.32519 0.86394 0.79673 0.78095 0.82702 1.18865 1.20351 1.19055 1.20921 1.00191 1.03595 1.00042 1.20350 0.95045 0.98351 0.96662 0.92327 0.90553 0.92357 0.93349 0.90197 0.92021 0.87805 0.86694 0.73413 0.84207 0.91577 0.95842 0.89509 0.86558 0.90841 0.89244 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 7.94 37.16 0.30 -1.70 16 2 C 0.12 1.55 0.71 -131.61 -0.09 1.45 16 3 C -0.19 -2.45 7.93 37.16 0.29 -2.16 16 4 C -0.10 -1.10 5.14 -27.88 -0.14 -1.24 16 5 C 0.48 5.00 7.74 36.00 0.28 5.27 16 6 O -0.51 -6.37 12.11 -18.76 -0.23 -6.60 16 7 O -0.52 -4.16 13.42 -39.24 -0.53 -4.68 16 8 N -0.67 -10.28 6.08 -101.22 -0.62 -10.89 16 9 C 0.12 2.12 5.02 -4.97 -0.02 2.09 16 10 C -0.21 -4.54 5.41 -104.33 -0.56 -5.10 16 11 C -0.08 -1.84 9.67 -39.66 -0.38 -2.22 16 12 C -0.17 -4.36 8.70 -38.87 -0.34 -4.69 16 13 C 0.11 3.00 5.58 -106.82 -0.60 2.41 16 14 C -0.46 -12.36 9.05 -37.74 -0.34 -12.70 16 15 H 0.08 1.94 7.91 -52.48 -0.41 1.53 16 16 C 0.08 1.92 5.14 -17.35 -0.09 1.84 16 17 N -0.79 -20.51 10.95 55.55 0.61 -19.90 16 18 Si 0.91 18.68 29.60 -169.99 -5.03 13.65 16 19 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 C -0.23 -5.58 9.80 -38.88 -0.38 -5.96 16 23 C -0.09 -1.87 9.67 -39.66 -0.38 -2.26 16 24 H 0.06 0.80 6.40 -51.93 -0.33 0.46 16 25 H 0.08 1.00 5.52 -51.93 -0.29 0.71 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.03 5.52 -51.93 -0.29 0.74 16 29 H 0.06 0.82 6.40 -51.92 -0.33 0.48 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.41 1.52 9.10 45.56 0.41 1.94 16 33 H 0.34 5.15 8.71 -39.29 -0.34 4.80 16 34 H 0.07 1.13 6.24 -51.93 -0.32 0.81 16 35 H 0.02 0.39 6.24 -51.93 -0.32 0.06 16 36 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 37 H 0.12 3.14 6.15 -52.49 -0.32 2.81 16 38 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 39 H 0.09 2.08 8.06 -52.49 -0.42 1.65 16 40 H 0.08 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 324.22 15.07 4.89 4.89 Total: -1.00 -28.95 324.22 -8.02 -36.97 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -4.65 Total: 11.54 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -2.47 Total: -24.97 kcal Atomic # 7 Polarization: -30.79 SS G_CDS: -0.01 Total: -30.80 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.75 Total: -11.28 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.95 -8.02 -36.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833456304.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.475 kcal (2) G-P(sol) polarization free energy of solvation -28.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds