Wall clock time and date at job start Mon Mar 30 2020 01:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 C 1.52999 * 109.47021 * 240.00154 * 2 1 3 5 5 C 1.50697 * 109.47481 * 60.00152 * 4 2 1 6 6 O 1.20833 * 119.99791 * 359.97438 * 5 4 2 7 7 O 1.34223 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.46892 * 109.46996 * 120.00030 * 2 1 3 9 9 C 1.46904 * 111.00335 * 300.00122 * 8 2 1 10 10 C 1.50706 * 109.47200 * 180.02562 * 9 8 2 11 11 C 1.38632 * 119.74447 * 269.72385 * 10 9 8 12 12 C 1.37617 * 120.24259 * 179.72332 * 11 10 9 13 13 C 1.40723 * 119.74450 * 0.57032 * 12 11 10 14 14 C 1.41398 * 120.23981 * 179.68073 * 13 12 11 15 15 H 1.08005 * 119.99550 * 204.40770 * 14 13 12 16 16 C 1.39939 * 120.00283 * 24.41289 * 14 13 12 17 17 N 1.30820 * 120.00244 * 17.84078 * 16 14 13 18 18 Si 1.86804 * 120.00028 * 197.84457 * 16 14 13 19 19 H 1.48498 * 109.47075 * 59.99556 * 18 16 14 20 20 H 1.48499 * 109.46991 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47231 * 299.99662 * 18 16 14 22 22 C 1.40709 * 119.51285 * 359.70769 * 13 12 11 23 23 C 1.37616 * 119.74556 * 359.97438 * 22 13 12 24 24 H 1.08998 * 109.47328 * 300.00189 * 1 2 3 25 25 H 1.09000 * 109.47163 * 59.99966 * 1 2 3 26 26 H 1.09005 * 109.47497 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47145 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47126 * 300.00057 * 3 2 1 29 29 H 1.09007 * 109.46997 * 59.99890 * 3 2 1 30 30 H 1.09003 * 109.46758 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47182 * 299.99850 * 4 2 1 32 32 H 0.96704 * 117.00099 * 180.02562 * 7 5 4 33 33 H 1.00906 * 111.00654 * 176.04538 * 8 2 1 34 34 H 1.08995 * 109.46834 * 59.99941 * 9 8 2 35 35 H 1.09002 * 109.46798 * 299.99774 * 9 8 2 36 36 H 1.07995 * 119.87943 * 359.97438 * 11 10 9 37 37 H 1.07998 * 120.12987 * 180.28328 * 12 11 10 38 38 H 0.96997 * 120.00535 * 180.02562 * 17 16 14 39 39 H 1.07994 * 120.12670 * 179.97438 * 22 13 12 40 40 H 1.07994 * 119.87962 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 8 0.8426 0.9714 -2.3689 7 8 1.8615 -0.4697 -3.6988 8 7 2.0196 -0.6925 1.1994 9 6 1.5485 -0.0264 2.4211 10 6 2.0702 -0.7631 3.6279 11 6 1.3231 -1.7908 4.1824 12 6 1.7922 -2.4741 5.2810 13 6 3.0297 -2.1181 5.8486 14 6 3.5186 -2.8086 6.9815 15 1 4.2218 -2.3275 7.6452 16 6 3.0914 -4.1154 7.2426 17 7 2.5344 -4.8234 6.2940 18 14 3.3164 -4.8488 8.9458 19 1 2.5821 -4.0258 9.9401 20 1 2.7846 -6.2352 8.9620 21 1 4.7610 -4.8683 9.2896 22 6 3.7767 -1.0694 5.2808 23 6 3.2910 -0.4043 4.1783 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7216 -1.2490 31 1 1.6766 -1.7489 -1.2493 32 1 1.5161 0.0196 -4.4581 33 1 3.0262 -0.7626 1.1910 34 1 0.4587 -0.0266 2.4378 35 1 1.9121 1.0011 2.4379 36 1 0.3713 -2.0588 3.7483 37 1 1.2108 -3.2774 5.7087 38 1 2.2380 -5.7291 6.4750 39 1 4.7274 -0.7877 5.7086 40 1 3.8627 0.4006 3.7405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833456304.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:50 Heat of formation + Delta-G solvation = -96.489503 kcal Electronic energy + Delta-G solvation = -21043.294852 eV Core-core repulsion = 17821.492411 eV Total energy + Delta-G solvation = -3221.802440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56987 -39.72816 -38.62756 -36.97074 -35.67562 -33.45421 -31.27363 -30.90656 -29.43307 -28.28120 -27.80261 -25.06765 -22.97344 -22.76629 -21.51861 -20.13264 -19.18325 -19.05774 -17.50936 -17.21482 -16.94697 -16.85936 -15.86139 -15.70391 -15.35679 -15.19276 -14.90872 -14.39506 -14.16201 -13.98000 -13.78961 -13.71903 -13.32815 -13.04863 -12.98150 -12.78979 -12.69162 -12.58022 -12.27875 -12.07071 -11.99193 -11.87159 -11.71007 -11.39742 -11.22921 -11.15184 -10.95704 -9.32373 -9.30290 -9.08914 -8.60325 -6.30003 0.98874 1.19660 1.24974 1.38700 1.49703 1.54316 2.12768 2.22260 2.74301 3.49870 3.64408 3.85149 3.94015 4.16368 4.34314 4.39955 4.51415 4.59144 4.59363 4.69128 4.70043 4.77712 4.85414 4.94504 5.05407 5.10485 5.13495 5.19256 5.29432 5.38056 5.44326 5.50937 5.75426 5.76240 5.98954 6.13757 6.20848 6.33207 6.43426 6.58189 6.75315 6.98029 7.07241 7.08735 8.36052 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039114 B = 0.003156 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.680494 B = 8870.218578 C = 9096.382672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.123 3.877 3 C -0.189 4.189 4 C -0.104 4.104 5 C 0.490 3.510 6 O -0.533 6.533 7 O -0.514 6.514 8 N -0.678 5.678 9 C 0.131 3.869 10 C -0.198 4.198 11 C -0.086 4.086 12 C -0.191 4.191 13 C 0.079 3.921 14 C -0.504 4.504 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.825 5.825 18 Si 0.980 3.020 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.243 4.243 23 C -0.084 4.084 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.427 0.573 33 H 0.342 0.658 34 H 0.068 0.932 35 H 0.037 0.963 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.287 0.713 39 H 0.094 0.906 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.539 6.555 -14.914 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.032 3.968 3 C -0.248 4.248 4 C -0.142 4.142 5 C 0.334 3.666 6 O -0.424 6.424 7 O -0.328 6.328 8 N -0.309 5.309 9 C 0.003 3.997 10 C -0.199 4.199 11 C -0.104 4.104 12 C -0.211 4.211 13 C 0.077 3.923 14 C -0.534 4.534 15 H 0.091 0.909 16 C -0.180 4.180 17 N -0.451 5.451 18 Si 0.801 3.199 19 H -0.186 1.186 20 H -0.192 1.192 21 H -0.184 1.184 22 C -0.263 4.263 23 C -0.102 4.102 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.289 0.711 33 H 0.161 0.839 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.180 5.900 -14.633 15.927 hybrid contribution 0.445 0.535 0.434 0.820 sum -1.734 6.435 -14.199 15.686 Atomic orbital electron populations 1.22092 0.93898 1.01959 1.02702 1.20629 0.95803 0.91432 0.88887 1.22727 1.00954 0.97725 1.03367 1.21339 1.04097 1.01237 0.87553 1.23340 0.76287 0.81773 0.85245 1.90621 1.37079 1.27462 1.87227 1.84511 1.72121 1.59143 1.17014 1.60663 1.16513 1.53299 1.00445 1.20505 0.99135 0.93851 0.86190 1.19338 0.97620 1.02131 1.00834 1.20722 0.98616 0.95497 0.95609 1.21265 0.97156 1.02641 1.00031 1.17955 0.91046 0.91286 0.92029 1.19811 1.25259 0.99055 1.09282 0.90872 1.26733 0.92294 0.96973 1.01953 1.69880 1.30694 1.10028 1.34463 0.85286 0.79806 0.77493 0.77309 1.18637 1.19183 1.18370 1.21138 1.00482 1.03632 1.01020 1.20675 0.95387 0.98551 0.95621 0.93060 0.90401 0.92715 0.92441 0.90377 0.92827 0.86178 0.86275 0.71104 0.83886 0.91336 0.94456 0.88198 0.88518 0.90232 0.88777 0.86732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 7.94 71.98 0.57 -3.10 16 2 C 0.12 2.86 0.71 3.53 0.00 2.86 16 3 C -0.19 -4.28 7.93 71.98 0.57 -3.71 16 4 C -0.10 -1.93 5.14 29.85 0.15 -1.78 16 5 C 0.49 8.93 7.74 71.23 0.55 9.48 16 6 O -0.53 -12.29 12.11 21.94 0.27 -12.02 16 7 O -0.51 -6.77 13.42 -51.35 -0.69 -7.46 16 8 N -0.68 -19.11 6.08 -474.15 -2.88 -21.99 16 9 C 0.13 4.21 5.02 85.56 0.43 4.64 16 10 C -0.20 -8.14 5.41 -19.67 -0.11 -8.25 16 11 C -0.09 -3.99 9.67 22.22 0.21 -3.78 16 12 C -0.19 -10.26 8.70 22.73 0.20 -10.06 16 13 C 0.08 4.34 5.58 -21.29 -0.12 4.23 16 14 C -0.50 -27.78 9.05 23.46 0.21 -27.57 16 15 H 0.07 3.89 7.91 -2.91 -0.02 3.86 16 16 C 0.04 1.81 5.14 85.26 0.44 2.25 16 17 N -0.82 -44.00 10.95 21.82 0.24 -43.76 16 18 Si 0.98 38.83 29.60 68.60 2.03 40.86 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 20 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 22 C -0.24 -11.97 9.80 22.73 0.22 -11.74 16 23 C -0.08 -3.55 9.67 22.22 0.21 -3.34 16 24 H 0.05 1.31 6.40 -2.39 -0.02 1.30 16 25 H 0.08 1.92 5.52 -2.39 -0.01 1.91 16 26 H 0.05 1.36 8.14 -2.38 -0.02 1.35 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 1.85 5.52 -2.39 -0.01 1.83 16 29 H 0.05 1.29 6.40 -2.38 -0.02 1.27 16 30 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.43 1.98 9.10 -74.05 -0.67 1.30 16 33 H 0.34 9.43 8.71 -89.69 -0.78 8.65 16 34 H 0.07 2.20 6.24 -2.39 -0.01 2.19 16 35 H 0.04 1.12 6.24 -2.39 -0.01 1.11 16 36 H 0.10 4.30 8.06 -2.91 -0.02 4.27 16 37 H 0.10 5.47 6.15 -2.91 -0.02 5.45 16 38 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 39 H 0.09 4.41 8.06 -2.91 -0.02 4.38 16 40 H 0.11 4.09 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -63.18 324.22 2.14 -61.04 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.38 Total: 33.19 kcal Atomic # 6 Polarization: -53.42 SS G_CDS: 3.55 Total: -49.86 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -2.64 Total: -65.75 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.42 Total: -19.48 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -63.18 2.14 -61.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833456304.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.445 kcal (2) G-P(sol) polarization free energy of solvation -63.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds