Wall clock time and date at job start Mon Mar 30 2020 02:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47135 * 2 1 4 4 C 1.52994 * 109.47402 * 120.00450 * 2 1 3 5 5 O 1.45197 * 109.47440 * 64.99706 * 4 2 1 6 6 C 1.34230 * 117.00002 * 180.02562 * 5 4 2 7 7 O 1.20817 * 120.00321 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99739 * 179.97438 * 6 5 4 9 9 N 1.46499 * 109.47047 * 179.97438 * 8 6 5 10 10 C 1.39685 * 120.00341 * 180.02562 * 9 8 6 11 11 C 1.39337 * 119.94932 * 359.97438 * 10 9 8 12 12 C 1.38478 * 120.42823 * 180.02562 * 11 10 9 13 13 C 1.37688 * 120.32117 * 359.97438 * 12 11 10 14 14 C 1.40752 * 119.89434 * 0.03305 * 13 12 11 15 15 C 1.41411 * 120.20601 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00317 * 24.35956 * 15 14 13 17 17 C 1.39935 * 119.99624 * 204.36087 * 15 14 13 18 18 N 1.30827 * 120.00201 * 17.84631 * 17 15 14 19 19 Si 1.86796 * 119.99610 * 197.84653 * 17 15 14 20 20 H 1.48501 * 109.47546 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47184 * 119.99998 * 19 17 15 22 22 H 1.48498 * 109.47199 * 240.00043 * 19 17 15 23 23 C 1.38275 * 119.95691 * 179.97438 * 10 9 8 24 24 H 1.09003 * 109.46970 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46669 * 299.99910 * 1 2 3 26 26 H 1.08993 * 109.46792 * 60.00060 * 1 2 3 27 27 H 1.09005 * 109.46669 * 240.00090 * 2 1 3 28 28 H 1.09005 * 109.47427 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47670 * 299.99864 * 3 2 1 30 30 H 1.08997 * 109.47532 * 60.00668 * 3 2 1 31 31 H 1.09009 * 109.47017 * 304.99644 * 4 2 1 32 32 H 1.08995 * 109.47481 * 185.00156 * 4 2 1 33 33 H 1.09002 * 109.46971 * 60.00238 * 8 6 5 34 34 H 1.09002 * 109.47340 * 299.99615 * 8 6 5 35 35 H 0.97003 * 120.00136 * 359.97438 * 9 8 6 36 36 H 1.07999 * 119.78413 * 0.02562 * 11 10 9 37 37 H 1.07997 * 119.84142 * 179.97438 * 12 11 10 38 38 H 1.07997 * 120.05363 * 179.97438 * 13 12 11 39 39 H 0.97003 * 119.99955 * 179.97438 * 18 17 15 40 40 H 1.08008 * 120.15896 * 359.70358 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 1.6560 -2.1203 1.1910 6 6 2.0291 -2.8980 2.2195 7 8 2.6563 -2.4255 3.1377 8 6 1.6657 -4.3605 2.2289 9 7 2.1841 -4.9847 3.4487 10 6 1.9710 -6.3453 3.6819 11 6 1.2647 -7.1079 2.7539 12 6 1.0472 -8.4575 2.9754 13 6 1.5275 -9.0609 4.1159 14 6 2.2426 -8.3034 5.0625 15 6 2.7384 -8.9164 6.2364 16 1 2.9304 -9.9791 6.2510 17 6 2.9803 -8.1460 7.3793 18 7 2.4393 -6.9605 7.4956 19 14 4.0758 -8.8102 8.7386 20 1 4.5602 -10.1639 8.3671 21 1 5.2364 -7.9030 8.9268 22 1 3.3014 -8.8919 10.0030 23 6 2.4611 -6.9336 4.8333 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6055 -0.2618 2.1370 32 1 3.1263 -0.6444 1.2951 33 1 2.1021 -4.8489 1.3576 34 1 0.5811 -4.4656 2.1992 35 1 2.6760 -4.4532 4.0941 36 1 0.8844 -6.6434 1.8561 37 1 0.4982 -9.0394 2.2500 38 1 1.3551 -10.1136 4.2845 39 1 2.6067 -6.4266 8.2880 40 1 3.0128 -6.3445 5.5510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834675828.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:50 Heat of formation + Delta-G solvation = -96.388784 kcal Electronic energy + Delta-G solvation = -20526.161183 eV Core-core repulsion = 17304.363110 eV Total energy + Delta-G solvation = -3221.798073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.72966 -39.62068 -38.29544 -36.43342 -36.06458 -35.04266 -31.34333 -31.11762 -28.40029 -28.05545 -27.14042 -26.67241 -23.12264 -22.34784 -21.52526 -21.28601 -19.25358 -18.81356 -18.14545 -17.83017 -17.07967 -16.51593 -16.27240 -16.02193 -15.77115 -14.99994 -14.91671 -14.52022 -14.47933 -14.19112 -13.97184 -13.70635 -13.41321 -13.35498 -13.00172 -12.91151 -12.73292 -12.49944 -12.24517 -12.13725 -12.09630 -11.75460 -11.63370 -11.55396 -11.54086 -11.31541 -11.12033 -10.59683 -9.25047 -8.62883 -8.00723 -6.31759 0.98388 1.07624 1.32600 1.36728 1.38244 1.53180 1.56938 2.22683 2.74300 2.82295 3.49902 3.76347 3.81630 3.85836 4.10966 4.29558 4.33237 4.38144 4.45938 4.54168 4.60430 4.78399 4.80199 4.96666 4.97972 4.99772 5.15848 5.18288 5.20003 5.28495 5.38725 5.41232 5.41940 5.54828 5.91504 6.09525 6.20601 6.23235 6.52225 6.57087 6.88834 6.94013 7.05634 7.18670 8.37841 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026930 B = 0.003211 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.485191 B = 8719.253833 C = 9567.594125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.144 4.144 4 C 0.063 3.937 5 O -0.347 6.347 6 C 0.467 3.533 7 O -0.536 6.536 8 C 0.143 3.857 9 N -0.756 5.756 10 C 0.219 3.781 11 C -0.297 4.297 12 C -0.060 4.060 13 C -0.281 4.281 14 C 0.107 3.893 15 C -0.501 4.501 16 H 0.074 0.926 17 C 0.034 3.966 18 N -0.823 5.823 19 Si 0.980 3.020 20 H -0.257 1.257 21 H -0.267 1.267 22 H -0.266 1.266 23 C -0.258 4.258 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.395 0.605 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.092 0.908 39 H 0.284 0.716 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.087 13.944 -13.627 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 C -0.201 4.201 4 C -0.011 4.011 5 O -0.262 6.262 6 C 0.311 3.689 7 O -0.426 6.426 8 C 0.018 3.982 9 N -0.392 5.392 10 C 0.120 3.880 11 C -0.320 4.320 12 C -0.079 4.079 13 C -0.301 4.301 14 C 0.104 3.896 15 C -0.531 4.531 16 H 0.092 0.908 17 C -0.180 4.180 18 N -0.449 5.449 19 Si 0.800 3.200 20 H -0.181 1.181 21 H -0.192 1.192 22 H -0.191 1.191 23 C -0.282 4.282 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.231 0.769 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.037 14.377 -13.416 19.770 hybrid contribution 0.733 0.056 1.392 1.575 sum -1.303 14.433 -12.024 18.830 Atomic orbital electron populations 1.21854 0.93952 1.02252 1.02550 1.21196 0.97285 0.96479 0.95951 1.21787 1.01497 0.93569 1.03296 1.23470 1.00436 0.76467 1.00706 1.86459 1.72128 1.23464 1.44177 1.23826 0.75386 0.90286 0.79400 1.90656 1.38843 1.75691 1.37426 1.20659 1.02054 0.84765 0.90721 1.44283 1.64479 1.06928 1.23520 1.17667 0.94143 0.82662 0.93568 1.20313 1.14524 0.94785 1.02365 1.20699 0.97014 0.94374 0.95778 1.21065 1.10221 0.99212 0.99640 1.17716 0.87927 0.91841 0.92136 1.19838 1.40710 0.96033 0.96547 0.90790 1.26750 0.94981 0.94561 1.01745 1.69936 1.34724 1.11641 1.28628 0.85207 0.78255 0.79544 0.76953 1.18059 1.19216 1.19056 1.20645 1.12350 0.96700 0.98551 0.92748 0.92815 0.90805 0.89428 0.92057 0.90141 0.92256 0.91592 0.91297 0.86510 0.86901 0.76943 0.85571 0.85681 0.88956 0.90573 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.09 71.98 0.65 -1.33 16 2 C -0.09 -1.25 3.16 -10.80 -0.03 -1.29 16 3 C -0.14 -1.50 9.19 71.98 0.66 -0.83 16 4 C 0.06 1.24 4.84 71.98 0.35 1.59 16 5 O -0.35 -8.15 9.76 -51.41 -0.50 -8.65 16 6 C 0.47 13.45 8.03 71.24 0.57 14.02 16 7 O -0.54 -19.02 15.42 21.99 0.34 -18.69 16 8 C 0.14 4.10 5.50 85.63 0.47 4.57 16 9 N -0.76 -29.68 5.70 -343.29 -1.96 -31.63 16 10 C 0.22 10.19 6.64 38.16 0.25 10.44 16 11 C -0.30 -12.44 9.32 22.59 0.21 -12.23 16 12 C -0.06 -2.61 10.02 22.20 0.22 -2.38 16 13 C -0.28 -14.19 9.79 22.75 0.22 -13.97 16 14 C 0.11 6.02 5.57 -21.31 -0.12 5.90 16 15 C -0.50 -28.30 9.05 23.46 0.21 -28.08 16 16 H 0.07 4.03 7.91 -2.91 -0.02 4.01 16 17 C 0.03 1.81 5.14 85.25 0.44 2.25 16 18 N -0.82 -45.28 10.95 21.82 0.24 -45.04 16 19 Si 0.98 40.10 29.59 68.60 2.03 42.13 16 20 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 21 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 22 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 23 C -0.26 -14.14 8.53 22.85 0.19 -13.94 16 24 H 0.05 0.84 7.82 -2.39 -0.02 0.82 16 25 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 1.37 8.13 -2.38 -0.02 1.35 16 32 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 33 H 0.12 2.87 7.94 -2.39 -0.02 2.85 16 34 H 0.11 2.87 7.94 -2.39 -0.02 2.85 16 35 H 0.40 16.61 7.45 -92.71 -0.69 15.91 16 36 H 0.13 4.24 6.70 -2.91 -0.02 4.22 16 37 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 38 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 39 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 40 H 0.09 5.51 6.16 -2.91 -0.02 5.49 16 Total: -1.00 -65.57 338.08 4.80 -60.77 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: 0.34 Total: 36.40 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 4.31 Total: -35.30 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -1.72 Total: -76.67 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.16 Total: -27.33 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -65.57 4.80 -60.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834675828.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.621 kcal (2) G-P(sol) polarization free energy of solvation -65.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds