Wall clock time and date at job start Mon Mar 30 2020 01:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47174 * 2 1 4 4 C 1.52998 * 109.47041 * 119.99921 * 2 1 3 5 5 C 1.52995 * 109.47372 * 239.99740 * 2 1 3 6 6 H 1.09002 * 109.47427 * 185.95529 * 5 2 1 7 7 O 1.42910 * 109.47055 * 65.95854 * 5 2 1 8 8 C 1.50701 * 109.47286 * 305.95815 * 5 2 1 9 9 O 1.21281 * 120.00024 * 101.46700 * 8 5 2 10 10 N 1.34775 * 119.99923 * 281.46488 * 8 5 2 11 11 C 1.39936 * 119.99897 * 178.54502 * 10 8 5 12 12 C 1.39287 * 119.94992 * 35.15664 * 11 10 8 13 13 C 1.38488 * 120.42810 * 179.76173 * 12 11 10 14 14 C 1.37680 * 120.32433 * 0.51926 * 13 12 11 15 15 C 1.40750 * 119.88172 * 359.74086 * 14 13 12 16 16 C 1.41407 * 120.20692 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99897 * 152.32439 * 16 15 14 18 18 C 1.39935 * 120.00271 * 332.32264 * 16 15 14 19 19 N 1.30827 * 120.00042 * 167.69777 * 18 16 15 20 20 Si 1.86802 * 119.99881 * 347.69729 * 18 16 15 21 21 H 1.48503 * 109.46989 * 95.21285 * 20 18 16 22 22 H 1.48498 * 109.47337 * 215.21718 * 20 18 16 23 23 H 1.48504 * 109.46943 * 335.21699 * 20 18 16 24 24 C 1.38250 * 119.94246 * 215.43714 * 11 10 8 25 25 H 1.09007 * 109.47289 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46868 * 60.00083 * 1 2 3 27 27 H 1.08995 * 109.47506 * 300.00116 * 1 2 3 28 28 H 1.08999 * 109.46808 * 60.00046 * 3 2 1 29 29 H 1.08997 * 109.47284 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.46725 * 299.99910 * 3 2 1 31 31 H 1.09002 * 109.47249 * 51.97065 * 4 2 1 32 32 H 1.09003 * 109.47350 * 171.96800 * 4 2 1 33 33 H 1.09000 * 109.47446 * 291.96884 * 4 2 1 34 34 H 0.96703 * 113.99542 * 299.99684 * 7 5 2 35 35 H 0.97004 * 119.99903 * 358.54804 * 10 8 5 36 36 H 1.08003 * 119.78337 * 0.02562 * 12 11 10 37 37 H 1.08000 * 119.83782 * 180.23909 * 13 12 11 38 38 H 1.07999 * 120.06032 * 179.76332 * 14 13 12 39 39 H 0.96995 * 119.99889 * 180.02562 * 19 18 16 40 40 H 1.07993 * 120.16258 * 359.95191 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1248 -0.8145 -1.1974 7 8 1.6813 0.0283 -2.4118 8 6 1.4209 -2.0932 -1.3251 9 8 0.4904 -2.2978 -2.0756 10 7 1.9013 -3.0926 -0.5591 11 6 1.3070 -4.3586 -0.6071 12 6 0.7966 -4.8420 -1.8096 13 6 0.2108 -6.0955 -1.8695 14 6 0.1170 -6.8737 -0.7376 15 6 0.6234 -6.3961 0.4857 16 6 0.5312 -7.1899 1.6524 17 1 1.2583 -7.0749 2.4427 18 6 -0.5022 -8.1244 1.7830 19 7 -0.4577 -9.0200 2.7355 20 14 -1.9452 -8.0930 0.5971 21 1 -1.6993 -9.0548 -0.5073 22 1 -3.1866 -8.4736 1.3178 23 1 -2.0968 -6.7256 0.0381 24 6 1.2222 -5.1250 0.5403 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.5641 -1.6991 1.3239 32 1 3.1204 -0.8473 1.1804 33 1 1.7986 -0.1312 2.1334 34 1 0.7284 0.1509 -2.5222 35 1 2.6590 -2.9343 0.0255 36 1 0.8620 -4.2371 -2.7019 37 1 -0.1783 -6.4625 -2.8077 38 1 -0.3441 -7.8490 -0.7883 39 1 -1.1738 -9.6680 2.8258 40 1 1.6142 -4.7495 1.4739 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837072250.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:01 Heat of formation + Delta-G solvation = -78.362198 kcal Electronic energy + Delta-G solvation = -21920.184213 eV Core-core repulsion = 18699.167831 eV Total energy + Delta-G solvation = -3221.016382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63741 -38.30281 -36.98806 -35.20831 -34.31112 -33.23513 -30.34960 -29.38878 -27.49360 -27.38168 -26.81709 -25.12973 -22.13269 -21.14695 -20.15612 -19.44285 -18.06437 -17.58400 -16.34848 -16.05297 -15.84527 -15.11195 -14.89907 -14.50240 -14.41582 -13.80379 -13.62782 -13.22016 -12.83983 -12.67053 -12.57616 -12.40839 -12.28293 -12.09447 -11.89256 -11.66838 -11.56684 -11.14626 -11.10179 -11.04212 -11.01352 -10.56050 -10.45978 -9.86586 -9.73768 -9.49464 -9.15154 -9.04602 -7.71864 -7.19087 -6.94449 -4.52775 2.27865 2.61635 2.96216 3.12507 3.23093 3.34084 3.38849 3.98494 4.17176 4.39982 4.50451 4.54450 4.71503 4.90727 5.15869 5.25304 5.39204 5.43011 5.50933 5.59991 5.70007 5.76859 5.82678 5.97696 6.00629 6.12327 6.16548 6.30143 6.35834 6.49902 6.69888 6.75944 7.09779 7.29105 7.36386 7.46176 7.63584 7.81499 7.86034 8.08439 8.30942 8.45421 8.60939 8.78391 10.07957 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028034 B = 0.004625 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.554184 B = 6053.230351 C = 6451.834697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.134 4.134 4 C -0.157 4.157 5 C 0.102 3.898 6 H 0.118 0.882 7 O -0.538 6.538 8 C 0.484 3.516 9 O -0.518 6.518 10 N -0.664 5.664 11 C 0.163 3.837 12 C -0.230 4.230 13 C -0.068 4.068 14 C -0.242 4.242 15 C 0.104 3.896 16 C -0.444 4.444 17 H 0.090 0.910 18 C 0.083 3.917 19 N -0.814 5.814 20 Si 0.914 3.086 21 H -0.272 1.272 22 H -0.295 1.295 23 H -0.239 1.239 24 C -0.230 4.230 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.382 0.618 35 H 0.402 0.598 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.285 0.715 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.805 15.659 -2.996 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.094 4.094 3 C -0.191 4.191 4 C -0.214 4.214 5 C 0.039 3.961 6 H 0.136 0.864 7 O -0.344 6.344 8 C 0.270 3.730 9 O -0.393 6.393 10 N -0.310 5.310 11 C 0.071 3.929 12 C -0.251 4.251 13 C -0.087 4.087 14 C -0.261 4.261 15 C 0.101 3.899 16 C -0.473 4.473 17 H 0.108 0.892 18 C -0.136 4.136 19 N -0.438 5.438 20 Si 0.742 3.258 21 H -0.199 1.199 22 H -0.223 1.223 23 H -0.163 1.163 24 C -0.251 4.251 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.232 0.768 35 H 0.238 0.762 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.706 15.377 -3.446 16.189 hybrid contribution -0.854 -0.264 0.066 0.897 sum 2.852 15.113 -3.380 15.746 Atomic orbital electron populations 1.21960 0.93666 1.03050 1.02129 1.21135 0.96926 0.96743 0.94577 1.21766 1.01052 0.94126 1.02139 1.22063 1.01212 1.01445 0.96677 1.21958 1.00292 0.87488 0.86374 0.86417 1.86545 1.30074 1.73737 1.44002 1.21484 0.84044 0.86969 0.80468 1.90715 1.27947 1.83099 1.37524 1.43665 1.34006 1.09707 1.43590 1.17539 0.97601 0.83351 0.94373 1.20408 1.11043 0.97416 0.96263 1.20483 0.97617 0.93744 0.96894 1.20976 1.11419 1.00186 0.93541 1.17486 0.89567 0.90421 0.92468 1.19465 1.11007 1.14279 1.02569 0.89198 1.26149 0.99771 0.92335 0.95321 1.69646 1.32290 1.12273 1.29597 0.86303 0.78810 0.81422 0.79267 1.19876 1.22300 1.16275 1.20692 1.13136 0.96309 0.94986 0.91733 0.92396 0.91860 0.92398 0.92453 0.91841 0.91259 0.92087 0.91576 0.76787 0.76235 0.87210 0.88493 0.88495 0.90442 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 7.92 37.15 0.29 -1.35 16 2 C -0.09 -0.91 0.63 -154.51 -0.10 -1.01 16 3 C -0.13 -1.09 8.26 37.16 0.31 -0.78 16 4 C -0.16 -1.46 7.41 37.16 0.28 -1.19 16 5 C 0.10 1.19 2.73 -27.88 -0.08 1.11 16 6 H 0.12 1.16 8.12 -51.93 -0.42 0.74 16 7 O -0.54 -6.62 12.19 -54.42 -0.66 -7.29 16 8 C 0.48 7.63 5.14 -10.99 -0.06 7.58 16 9 O -0.52 -10.10 13.64 -13.63 -0.19 -10.28 16 10 N -0.66 -10.69 4.23 -9.91 -0.04 -10.73 16 11 C 0.16 3.41 6.27 -83.76 -0.53 2.89 16 12 C -0.23 -5.14 8.68 -39.10 -0.34 -5.48 16 13 C -0.07 -1.55 10.02 -39.69 -0.40 -1.95 16 14 C -0.24 -5.91 6.87 -38.84 -0.27 -6.18 16 15 C 0.10 2.62 5.22 -106.85 -0.56 2.06 16 16 C -0.44 -11.89 9.62 -37.74 -0.36 -12.25 16 17 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 18 C 0.08 2.16 5.48 -17.34 -0.10 2.07 16 19 N -0.81 -21.67 13.93 55.55 0.77 -20.90 16 20 Si 0.91 21.16 24.34 -169.99 -4.14 17.02 16 21 H -0.27 -6.12 6.78 56.52 0.38 -5.73 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.24 -5.74 6.37 56.52 0.36 -5.38 16 24 C -0.23 -5.16 9.71 -38.68 -0.38 -5.54 16 25 H 0.06 0.90 6.91 -51.93 -0.36 0.54 16 26 H 0.06 0.58 6.91 -51.93 -0.36 0.22 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.53 7.54 -51.93 -0.39 0.14 16 31 H 0.07 0.78 6.49 -51.93 -0.34 0.45 16 32 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 33 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 34 H 0.38 4.20 7.18 45.56 0.33 4.53 16 35 H 0.40 5.11 7.63 -40.82 -0.31 4.80 16 36 H 0.11 2.44 6.31 -52.48 -0.33 2.11 16 37 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 38 H 0.10 2.36 4.00 -52.49 -0.21 2.15 16 39 H 0.29 6.91 8.30 -40.82 -0.34 6.57 16 40 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 LS Contribution 316.77 15.07 4.77 4.77 Total: -1.00 -30.10 316.77 -6.72 -36.83 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -4.97 Total: 10.60 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -2.27 Total: -20.02 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.73 Total: -31.63 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.85 Total: -17.57 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.14 Total: 17.02 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.10 -6.72 -36.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837072250.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.537 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds