Wall clock time and date at job start Mon Mar 30 2020 01:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47174 * 2 1 4 4 C 1.52998 * 109.47041 * 119.99921 * 2 1 3 5 5 C 1.52995 * 109.47372 * 239.99740 * 2 1 3 6 6 H 1.09002 * 109.47427 * 185.95529 * 5 2 1 7 7 O 1.42910 * 109.47055 * 65.95854 * 5 2 1 8 8 C 1.50701 * 109.47286 * 305.95815 * 5 2 1 9 9 O 1.21281 * 120.00024 * 101.46700 * 8 5 2 10 10 N 1.34775 * 119.99923 * 281.46488 * 8 5 2 11 11 C 1.39936 * 119.99897 * 178.54502 * 10 8 5 12 12 C 1.39287 * 119.94992 * 35.15664 * 11 10 8 13 13 C 1.38488 * 120.42810 * 179.76173 * 12 11 10 14 14 C 1.37680 * 120.32433 * 0.51926 * 13 12 11 15 15 C 1.40750 * 119.88172 * 359.74086 * 14 13 12 16 16 C 1.41407 * 120.20692 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99897 * 152.32439 * 16 15 14 18 18 C 1.39935 * 120.00271 * 332.32264 * 16 15 14 19 19 N 1.30827 * 120.00042 * 167.69777 * 18 16 15 20 20 Si 1.86802 * 119.99881 * 347.69729 * 18 16 15 21 21 H 1.48503 * 109.46989 * 95.21285 * 20 18 16 22 22 H 1.48498 * 109.47337 * 215.21718 * 20 18 16 23 23 H 1.48504 * 109.46943 * 335.21699 * 20 18 16 24 24 C 1.38250 * 119.94246 * 215.43714 * 11 10 8 25 25 H 1.09007 * 109.47289 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46868 * 60.00083 * 1 2 3 27 27 H 1.08995 * 109.47506 * 300.00116 * 1 2 3 28 28 H 1.08999 * 109.46808 * 60.00046 * 3 2 1 29 29 H 1.08997 * 109.47284 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.46725 * 299.99910 * 3 2 1 31 31 H 1.09002 * 109.47249 * 51.97065 * 4 2 1 32 32 H 1.09003 * 109.47350 * 171.96800 * 4 2 1 33 33 H 1.09000 * 109.47446 * 291.96884 * 4 2 1 34 34 H 0.96703 * 113.99542 * 299.99684 * 7 5 2 35 35 H 0.97004 * 119.99903 * 358.54804 * 10 8 5 36 36 H 1.08003 * 119.78337 * 0.02562 * 12 11 10 37 37 H 1.08000 * 119.83782 * 180.23909 * 13 12 11 38 38 H 1.07999 * 120.06032 * 179.76332 * 14 13 12 39 39 H 0.96995 * 119.99889 * 180.02562 * 19 18 16 40 40 H 1.07993 * 120.16258 * 359.95191 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1248 -0.8145 -1.1974 7 8 1.6813 0.0283 -2.4118 8 6 1.4209 -2.0932 -1.3251 9 8 0.4904 -2.2978 -2.0756 10 7 1.9013 -3.0926 -0.5591 11 6 1.3070 -4.3586 -0.6071 12 6 0.7966 -4.8420 -1.8096 13 6 0.2108 -6.0955 -1.8695 14 6 0.1170 -6.8737 -0.7376 15 6 0.6234 -6.3961 0.4857 16 6 0.5312 -7.1899 1.6524 17 1 1.2583 -7.0749 2.4427 18 6 -0.5022 -8.1244 1.7830 19 7 -0.4577 -9.0200 2.7355 20 14 -1.9452 -8.0930 0.5971 21 1 -1.6993 -9.0548 -0.5073 22 1 -3.1866 -8.4736 1.3178 23 1 -2.0968 -6.7256 0.0381 24 6 1.2222 -5.1250 0.5403 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.5641 -1.6991 1.3239 32 1 3.1204 -0.8473 1.1804 33 1 1.7986 -0.1312 2.1334 34 1 0.7284 0.1509 -2.5222 35 1 2.6590 -2.9343 0.0255 36 1 0.8620 -4.2371 -2.7019 37 1 -0.1783 -6.4625 -2.8077 38 1 -0.3441 -7.8490 -0.7883 39 1 -1.1738 -9.6680 2.8258 40 1 1.6142 -4.7495 1.4739 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837072250.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:01 Heat of formation + Delta-G solvation = -98.162368 kcal Electronic energy + Delta-G solvation = -21921.042812 eV Core-core repulsion = 18699.167831 eV Total energy + Delta-G solvation = -3221.874981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.87652 -39.77790 -38.34102 -36.42088 -35.66057 -34.99424 -32.22539 -30.95203 -28.36921 -28.24062 -27.78747 -27.03008 -23.66432 -22.89822 -21.64397 -20.38320 -19.63634 -18.99420 -17.88182 -17.50361 -17.09723 -16.54490 -16.36684 -15.83039 -15.67398 -15.38307 -14.71310 -14.51457 -14.40537 -14.18661 -13.93876 -13.63970 -13.38880 -13.18144 -13.03867 -12.95130 -12.88428 -12.69033 -12.51548 -12.40561 -11.98395 -11.77907 -11.69205 -11.59642 -11.38469 -11.18081 -10.88222 -10.43560 -9.59404 -8.91239 -8.90272 -6.54343 0.61422 0.75897 1.24802 1.39448 1.47010 1.58706 2.07553 2.11425 2.60274 3.24659 3.46912 3.56368 3.63749 3.78128 4.02437 4.25980 4.35901 4.43788 4.46773 4.57342 4.71226 4.76713 4.82177 4.86034 4.94563 4.97333 4.99353 5.03187 5.09895 5.26995 5.30806 5.35320 5.47242 5.55350 5.67282 5.78275 5.90498 6.16379 6.30757 6.44248 6.59070 6.67119 6.79845 7.15706 8.17020 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028034 B = 0.004625 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.554184 B = 6053.230351 C = 6451.834697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 C -0.129 4.129 4 C -0.159 4.159 5 C 0.111 3.889 6 H 0.145 0.855 7 O -0.543 6.543 8 C 0.483 3.517 9 O -0.556 6.556 10 N -0.655 5.655 11 C 0.173 3.827 12 C -0.231 4.231 13 C -0.072 4.072 14 C -0.258 4.258 15 C 0.087 3.913 16 C -0.474 4.474 17 H 0.064 0.936 18 C 0.049 3.951 19 N -0.849 5.849 20 Si 0.965 3.035 21 H -0.260 1.260 22 H -0.282 1.282 23 H -0.254 1.254 24 C -0.233 4.233 25 H 0.028 0.972 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.387 0.613 35 H 0.420 0.580 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.096 0.904 39 H 0.294 0.706 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.436 17.919 -3.954 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.086 4.086 3 C -0.186 4.186 4 C -0.216 4.216 5 C 0.048 3.952 6 H 0.162 0.838 7 O -0.349 6.349 8 C 0.272 3.728 9 O -0.434 6.434 10 N -0.302 5.302 11 C 0.079 3.921 12 C -0.252 4.252 13 C -0.091 4.091 14 C -0.278 4.278 15 C 0.084 3.916 16 C -0.504 4.504 17 H 0.082 0.918 18 C -0.165 4.165 19 N -0.476 5.476 20 Si 0.790 3.210 21 H -0.186 1.186 22 H -0.210 1.210 23 H -0.178 1.178 24 C -0.255 4.255 25 H 0.047 0.953 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.237 0.763 35 H 0.259 0.741 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.367 17.660 -4.391 18.714 hybrid contribution -0.975 -0.786 0.279 1.283 sum 3.392 16.874 -4.112 17.696 Atomic orbital electron populations 1.21963 0.94806 1.00921 1.03114 1.21112 0.95922 0.97851 0.93726 1.21733 1.01799 0.92405 1.02631 1.22095 1.02435 1.00223 0.96842 1.22113 1.01308 0.84605 0.87124 0.83790 1.86540 1.30636 1.73346 1.44416 1.22387 0.83275 0.88152 0.78996 1.90694 1.29709 1.83882 1.39113 1.43628 1.34333 1.08122 1.44155 1.17550 0.96379 0.84868 0.93295 1.20660 1.10404 0.97287 0.96863 1.20793 0.97140 0.93688 0.97483 1.21063 1.12211 1.00635 0.93865 1.17663 0.90369 0.91316 0.92298 1.19472 1.11717 1.16262 1.02952 0.91789 1.26729 1.01342 0.91926 0.96540 1.69668 1.33559 1.13299 1.31070 0.85522 0.76798 0.80655 0.78002 1.18635 1.20967 1.17813 1.20854 1.12643 0.95788 0.96223 0.95272 0.91764 0.90651 0.91296 0.91232 0.92027 0.93632 0.89868 0.90498 0.76252 0.74089 0.86824 0.85870 0.88602 0.89572 0.86595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 7.92 71.98 0.57 -2.47 16 2 C -0.09 -1.42 0.63 -52.18 -0.03 -1.46 16 3 C -0.13 -1.61 8.26 71.98 0.59 -1.02 16 4 C -0.16 -2.50 7.41 71.98 0.53 -1.96 16 5 C 0.11 2.26 2.73 29.85 0.08 2.34 16 6 H 0.14 2.23 8.12 -2.39 -0.02 2.21 16 7 O -0.54 -11.94 12.19 -130.63 -1.59 -13.53 16 8 C 0.48 14.36 5.14 87.66 0.45 14.81 16 9 O -0.56 -21.09 13.64 15.32 0.21 -20.88 16 10 N -0.65 -19.91 4.23 -303.65 -1.28 -21.19 16 11 C 0.17 7.02 6.27 38.10 0.24 7.26 16 12 C -0.23 -10.00 8.68 22.58 0.20 -9.81 16 13 C -0.07 -3.20 10.02 22.20 0.22 -2.97 16 14 C -0.26 -12.55 6.87 22.75 0.16 -12.40 16 15 C 0.09 4.42 5.22 -21.31 -0.11 4.31 16 16 C -0.47 -26.25 9.62 23.46 0.23 -26.03 16 17 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 18 C 0.05 2.64 5.48 85.25 0.47 3.10 16 19 N -0.85 -46.39 13.93 21.82 0.30 -46.09 16 20 Si 0.96 43.88 24.34 68.60 1.67 45.55 16 21 H -0.26 -11.24 6.78 99.48 0.67 -10.57 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 23 H -0.25 -12.04 6.37 99.48 0.63 -11.40 16 24 C -0.23 -10.46 9.71 22.85 0.22 -10.24 16 25 H 0.03 0.79 6.91 -2.38 -0.02 0.77 16 26 H 0.06 1.18 6.91 -2.39 -0.02 1.16 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.82 7.54 -2.39 -0.02 0.80 16 31 H 0.04 0.94 6.49 -2.39 -0.02 0.93 16 32 H 0.08 0.94 8.11 -2.39 -0.02 0.92 16 33 H 0.08 1.06 8.13 -2.39 -0.02 1.05 16 34 H 0.39 7.76 7.18 -74.06 -0.53 7.23 16 35 H 0.42 9.66 7.63 -92.71 -0.71 8.96 16 36 H 0.11 4.87 6.31 -2.91 -0.02 4.85 16 37 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 38 H 0.10 4.62 4.00 -2.91 -0.01 4.61 16 39 H 0.29 14.47 8.30 -92.71 -0.77 13.70 16 40 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -65.81 316.77 2.84 -62.97 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: -0.28 Total: 29.71 kcal Atomic # 6 Polarization: -40.36 SS G_CDS: 3.81 Total: -36.54 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -0.98 Total: -67.28 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -1.38 Total: -34.41 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.67 Total: 45.55 kcal Total: -65.81 2.84 -62.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837072250.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.193 kcal (2) G-P(sol) polarization free energy of solvation -65.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds