Wall clock time and date at job start Mon Mar 30 2020 01:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47314 * 2 1 4 4 C 1.53003 * 109.47148 * 240.00291 * 2 1 3 5 5 C 1.52998 * 109.47220 * 120.00454 * 2 1 3 6 6 H 1.09003 * 109.47174 * 173.52694 * 5 2 1 7 7 O 1.42900 * 109.46762 * 293.52128 * 5 2 1 8 8 C 1.50700 * 109.47436 * 53.52288 * 5 2 1 9 9 O 1.21279 * 120.00195 * 266.54220 * 8 5 2 10 10 N 1.34777 * 119.99600 * 86.54155 * 8 5 2 11 11 C 1.39939 * 119.99597 * 174.93287 * 10 8 5 12 12 C 1.39285 * 119.94900 * 34.30070 * 11 10 8 13 13 C 1.38488 * 120.42872 * 179.72090 * 12 11 10 14 14 C 1.37687 * 120.32217 * 0.55394 * 13 12 11 15 15 C 1.40748 * 119.88297 * 359.72778 * 14 13 12 16 16 C 1.41401 * 120.20986 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99975 * 204.60670 * 16 15 14 18 18 C 1.39932 * 120.00152 * 24.60667 * 16 15 14 19 19 N 1.30825 * 119.99985 * 13.06394 * 18 16 15 20 20 Si 1.86799 * 120.00223 * 193.06963 * 18 16 15 21 21 H 1.48497 * 109.47178 * 59.99895 * 20 18 16 22 22 H 1.48499 * 109.47159 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47077 * 299.99992 * 20 18 16 24 24 C 1.38247 * 119.94448 * 214.57716 * 11 10 8 25 25 H 1.08992 * 109.47154 * 299.99788 * 1 2 3 26 26 H 1.08999 * 109.47203 * 60.00044 * 1 2 3 27 27 H 1.09007 * 109.46736 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47689 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47386 * 300.00331 * 3 2 1 30 30 H 1.09009 * 109.46805 * 59.99937 * 3 2 1 31 31 H 1.08999 * 109.46880 * 316.36208 * 4 2 1 32 32 H 1.08996 * 109.47364 * 76.36090 * 4 2 1 33 33 H 1.09001 * 109.47087 * 196.36371 * 4 2 1 34 34 H 0.96703 * 114.00080 * 60.00477 * 7 5 2 35 35 H 0.97006 * 120.00124 * 354.65360 * 10 8 5 36 36 H 1.07997 * 119.78738 * 0.02562 * 12 11 10 37 37 H 1.08004 * 119.84524 * 180.27743 * 13 12 11 38 38 H 1.07995 * 120.06025 * 179.73977 * 14 13 12 39 39 H 0.97003 * 120.00752 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.16257 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1239 -0.8228 1.1931 7 8 1.6918 0.0343 2.4110 8 6 1.4112 -2.0884 1.3319 9 8 0.3951 -2.2506 1.9738 10 7 1.9780 -3.1306 0.6924 11 6 1.4559 -4.4188 0.8547 12 6 0.0842 -4.5977 1.0176 13 6 -0.4438 -5.8685 1.1732 14 6 0.3837 -6.9690 1.1799 15 6 1.7724 -6.8031 1.0222 16 6 2.6285 -7.9285 1.0274 17 1 3.6666 -7.8161 1.3034 18 6 2.1307 -9.1880 0.6751 19 7 0.9600 -9.2912 0.1004 20 14 3.1377 -10.7218 1.0255 21 1 3.3841 -10.8292 2.4860 22 1 2.3934 -11.9196 0.5602 23 1 4.4358 -10.6360 0.3095 24 6 2.3030 -5.5113 0.8587 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.4599 -1.6306 -1.4061 32 1 1.9327 -0.0680 -2.1152 33 1 3.0908 -0.9789 -1.1166 34 1 0.7404 0.1643 2.5251 35 1 2.7453 -2.9872 0.1166 36 1 -0.5724 -3.7403 1.0177 37 1 -1.5093 -5.9967 1.2944 38 1 -0.0321 -7.9577 1.3058 39 1 0.6147 -10.1643 -0.1436 40 1 3.3672 -5.3732 0.7365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837072251.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:04 Heat of formation + Delta-G solvation = -100.783211 kcal Electronic energy + Delta-G solvation = -21702.599824 eV Core-core repulsion = 18480.611194 eV Total energy + Delta-G solvation = -3221.988630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.81380 -39.60589 -38.24042 -36.33146 -35.70296 -34.82838 -31.77285 -30.56642 -28.29189 -28.16951 -27.73485 -27.15091 -23.39378 -22.81728 -21.60095 -20.32251 -19.50075 -18.99210 -17.53287 -17.30583 -16.95340 -16.48111 -16.27268 -15.81201 -15.63414 -15.05207 -14.72646 -14.50356 -14.25394 -14.04469 -13.69492 -13.50072 -13.18411 -13.10513 -12.96568 -12.82974 -12.76153 -12.52157 -12.51946 -12.28978 -11.99452 -11.86711 -11.77520 -11.53767 -11.37419 -11.16331 -10.79120 -10.37261 -9.41837 -8.75161 -8.58748 -6.38021 0.84765 0.96693 1.39909 1.50732 1.52859 1.68905 2.15172 2.22816 2.76416 3.26049 3.55462 3.63187 3.73705 3.81183 4.04595 4.35159 4.41694 4.44925 4.67237 4.73450 4.77138 4.84751 4.99916 5.01033 5.02218 5.03577 5.08952 5.12486 5.20533 5.27558 5.33983 5.36095 5.47208 5.72911 5.83570 6.07998 6.13093 6.27209 6.45502 6.61476 6.70158 6.92822 6.97966 7.22455 8.35313 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035866 B = 0.003831 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.506892 B = 7306.949958 C = 7494.750726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 C -0.128 4.128 4 C -0.154 4.154 5 C 0.111 3.889 6 H 0.140 0.860 7 O -0.545 6.545 8 C 0.482 3.518 9 O -0.557 6.557 10 N -0.653 5.653 11 C 0.158 3.842 12 C -0.237 4.237 13 C -0.103 4.103 14 C -0.193 4.193 15 C 0.092 3.908 16 C -0.495 4.495 17 H 0.079 0.921 18 C 0.033 3.967 19 N -0.828 5.828 20 Si 0.986 3.014 21 H -0.262 1.262 22 H -0.269 1.269 23 H -0.257 1.257 24 C -0.256 4.256 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.032 0.968 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.387 0.613 35 H 0.417 0.583 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.288 0.712 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 15.564 -3.372 16.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.086 4.086 3 C -0.185 4.185 4 C -0.211 4.211 5 C 0.048 3.952 6 H 0.157 0.843 7 O -0.351 6.351 8 C 0.271 3.729 9 O -0.435 6.435 10 N -0.300 5.300 11 C 0.065 3.935 12 C -0.258 4.258 13 C -0.122 4.122 14 C -0.213 4.213 15 C 0.089 3.911 16 C -0.525 4.525 17 H 0.097 0.903 18 C -0.181 4.181 19 N -0.454 5.454 20 Si 0.806 3.194 21 H -0.187 1.187 22 H -0.193 1.193 23 H -0.181 1.181 24 C -0.278 4.278 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.238 0.762 35 H 0.255 0.745 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.098 0.902 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.457 15.373 -2.925 16.026 hybrid contribution -0.316 -1.084 -0.185 1.144 sum 3.141 14.288 -3.110 14.956 Atomic orbital electron populations 1.21967 0.94518 1.01188 1.03006 1.21117 0.96185 0.97776 0.93540 1.21743 1.01728 0.92386 1.02689 1.22031 1.01879 1.00293 0.96920 1.22141 1.01072 0.84712 0.87288 0.84305 1.86540 1.30849 1.73042 1.44671 1.22359 0.84662 0.88077 0.77838 1.90671 1.25197 1.85171 1.42502 1.43519 1.33889 1.05103 1.47475 1.17501 0.92157 0.83732 1.00135 1.20615 0.93654 0.96425 1.15099 1.20860 0.98512 0.92790 1.00066 1.21465 0.94404 0.97798 1.07653 1.17762 0.92861 0.92384 0.88114 1.19803 0.97618 0.92748 1.42323 0.90284 1.26780 0.96189 1.03645 0.91498 1.69861 1.18806 1.27610 1.29109 0.85197 0.78804 0.75652 0.79711 1.18679 1.19303 1.18123 1.20892 0.97965 0.92077 1.16824 0.91942 0.90539 0.94923 0.91398 0.91041 0.92098 0.93936 0.90010 0.90459 0.76209 0.74491 0.87315 0.87544 0.87227 0.90174 0.87158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 7.73 71.98 0.56 -2.52 16 2 C -0.09 -1.52 0.64 -52.18 -0.03 -1.55 16 3 C -0.13 -1.72 8.19 71.98 0.59 -1.13 16 4 C -0.15 -2.53 7.56 71.98 0.54 -1.98 16 5 C 0.11 2.50 2.70 29.85 0.08 2.58 16 6 H 0.14 2.53 8.03 -2.39 -0.02 2.52 16 7 O -0.54 -13.18 12.24 -131.44 -1.61 -14.78 16 8 C 0.48 15.70 5.21 87.66 0.46 16.16 16 9 O -0.56 -22.66 13.00 14.51 0.19 -22.47 16 10 N -0.65 -22.16 4.74 -303.66 -1.44 -23.60 16 11 C 0.16 7.12 6.30 38.10 0.24 7.36 16 12 C -0.24 -11.47 8.71 22.58 0.20 -11.28 16 13 C -0.10 -5.22 10.02 22.20 0.22 -4.99 16 14 C -0.19 -10.60 8.70 22.75 0.20 -10.40 16 15 C 0.09 5.02 5.59 -21.31 -0.12 4.90 16 16 C -0.50 -26.63 9.07 23.46 0.21 -26.42 16 17 H 0.08 4.04 7.88 -2.91 -0.02 4.01 16 18 C 0.03 1.67 5.24 85.25 0.45 2.12 16 19 N -0.83 -43.43 10.69 21.82 0.23 -43.20 16 20 Si 0.99 37.99 29.58 68.60 2.03 40.02 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 24 C -0.26 -12.47 9.70 22.85 0.22 -12.25 16 25 H 0.06 1.20 6.93 -2.39 -0.02 1.18 16 26 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.03 0.89 6.66 -2.38 -0.02 0.87 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.87 7.53 -2.38 -0.02 0.85 16 31 H 0.04 0.90 7.51 -2.39 -0.02 0.88 16 32 H 0.08 1.08 8.03 -2.39 -0.02 1.06 16 33 H 0.08 1.00 7.91 -2.39 -0.02 0.99 16 34 H 0.39 8.52 7.18 -74.06 -0.53 7.98 16 35 H 0.42 10.98 8.20 -92.70 -0.76 10.21 16 36 H 0.11 5.19 6.13 -2.91 -0.02 5.18 16 37 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 38 H 0.11 6.24 5.97 -2.91 -0.02 6.23 16 39 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 40 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -66.17 323.72 2.99 -63.18 By element: Atomic # 1 Polarization: 40.49 SS G_CDS: -0.23 Total: 40.26 kcal Atomic # 6 Polarization: -43.23 SS G_CDS: 3.81 Total: -39.41 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -1.21 Total: -66.80 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -1.42 Total: -37.25 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -66.17 2.99 -63.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837072251.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.599 kcal (2) G-P(sol) polarization free energy of solvation -66.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds