Wall clock time and date at job start Mon Mar 30 2020 01:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46622 * 2 1 4 4 O 1.42894 * 109.46959 * 62.52571 * 3 2 1 5 5 C 1.52996 * 109.47240 * 302.51891 * 3 2 1 6 6 C 1.50698 * 109.47295 * 184.36762 * 5 3 2 7 7 O 1.21296 * 119.99891 * 354.66016 * 6 5 3 8 8 N 1.34773 * 120.00304 * 174.93435 * 6 5 3 9 9 C 1.46496 * 120.00014 * 0.02562 * 8 6 5 10 10 C 1.37096 * 120.00179 * 180.02562 * 8 6 5 11 11 H 1.08001 * 120.00084 * 24.72503 * 10 8 6 12 12 C 1.38956 * 120.00262 * 204.72515 * 10 8 6 13 13 N 1.31405 * 119.99529 * 13.60300 * 12 10 8 14 14 Si 1.86798 * 119.99805 * 193.61034 * 12 10 8 15 15 H 1.48492 * 109.47497 * 59.99838 * 14 12 10 16 16 H 1.48501 * 109.46787 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47197 * 299.99179 * 14 12 10 18 18 C 1.50706 * 109.46782 * 182.52293 * 3 2 1 19 19 C 1.38240 * 120.00030 * 89.72760 * 18 3 2 20 20 C 1.38236 * 119.99621 * 179.80893 * 19 18 3 21 21 C 1.38231 * 120.00261 * 0.39445 * 20 19 18 22 22 C 1.38233 * 119.99871 * 359.86382 * 21 20 19 23 23 C 1.38231 * 120.00189 * 359.94653 * 22 21 20 24 24 H 1.09007 * 109.46930 * 305.46072 * 1 2 3 25 25 H 1.09002 * 109.47939 * 65.46393 * 1 2 3 26 26 H 1.09005 * 109.46937 * 185.46540 * 1 2 3 27 27 H 1.08997 * 109.46970 * 240.00707 * 2 1 3 28 28 H 1.08994 * 109.47831 * 119.99880 * 2 1 3 29 29 H 0.96699 * 113.99853 * 179.97438 * 4 3 2 30 30 H 1.09007 * 109.46762 * 64.37198 * 5 3 2 31 31 H 1.08995 * 109.47415 * 304.36895 * 5 3 2 32 32 H 1.08993 * 109.47869 * 90.04544 * 9 8 6 33 33 H 1.09005 * 109.47476 * 210.04826 * 9 8 6 34 34 H 1.09004 * 109.47147 * 330.03936 * 9 8 6 35 35 H 0.97010 * 119.99398 * 180.02562 * 13 12 10 36 36 H 1.08003 * 119.99507 * 359.97438 * 19 18 3 37 37 H 1.08004 * 119.99334 * 180.23464 * 20 19 18 38 38 H 1.07994 * 120.00069 * 179.82993 * 21 20 19 39 39 H 1.08003 * 120.00129 * 179.97438 * 22 21 20 40 40 H 1.08006 * 120.00336 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.6126 2.0988 1.1953 5 6 1.4787 2.1819 -1.2163 6 6 2.0649 3.5689 -1.2756 7 8 2.7777 3.9650 -0.3776 8 7 1.7928 4.3713 -2.3237 9 6 0.9267 3.8954 -3.4051 10 6 2.3266 5.6329 -2.3779 11 1 3.2385 5.8569 -1.8444 12 6 1.6943 6.6236 -3.1193 13 7 0.4644 6.4417 -3.5448 14 14 2.5927 8.2138 -3.5111 15 1 3.8195 7.9101 -4.2907 16 1 1.7066 9.0994 -4.3084 17 1 2.9663 8.8959 -2.2460 18 6 3.5456 1.4431 -0.0625 19 6 4.1865 1.4552 -1.2873 20 6 5.5677 1.4597 -1.3446 21 6 6.3079 1.4438 -0.1773 22 6 5.6670 1.4263 1.0474 23 6 4.2859 1.4258 1.1047 24 1 -0.3633 0.5962 0.8371 25 1 -0.3635 0.4267 -0.9348 26 1 -0.3633 -1.0230 0.0979 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.9009 3.0193 1.2632 30 1 0.3940 2.2492 -1.1319 31 1 1.7395 1.6381 -2.1242 32 1 -0.1093 4.1467 -3.1783 33 1 1.2193 4.3710 -4.3412 34 1 1.0257 2.8140 -3.5007 35 1 0.0232 7.1332 -4.0627 36 1 3.6081 1.4639 -2.1994 37 1 6.0684 1.4730 -2.3015 38 1 7.3870 1.4445 -0.2221 39 1 6.2453 1.4135 1.9594 40 1 3.7851 1.4125 2.0616 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840301030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:06 Heat of formation + Delta-G solvation = -74.474570 kcal Electronic energy + Delta-G solvation = -22612.014268 eV Core-core repulsion = 19391.166466 eV Total energy + Delta-G solvation = -3220.847801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.47447 -39.65379 -38.07729 -36.46759 -34.41195 -33.58403 -32.01375 -31.64803 -30.21113 -28.06824 -26.61372 -25.64829 -23.29163 -22.99925 -21.52264 -20.29855 -18.86313 -18.56708 -17.91487 -17.13275 -16.69269 -16.33385 -16.06720 -15.59410 -15.46087 -15.04193 -14.90433 -14.64150 -14.27784 -13.94865 -13.80695 -13.51326 -13.26925 -13.20719 -13.04630 -12.90140 -12.69475 -12.60288 -12.38320 -12.21406 -12.15958 -11.91080 -11.76015 -11.45566 -11.01608 -10.85423 -10.30305 -9.71571 -9.65404 -9.40799 -8.32813 -5.97227 0.56490 0.60151 1.37493 1.39376 1.49271 2.07529 2.27690 2.96455 3.07972 3.10512 3.33841 3.70370 3.87609 3.94976 4.14448 4.19688 4.29659 4.36972 4.44893 4.55113 4.60149 4.65975 4.73688 4.80032 4.87575 5.01241 5.08497 5.12244 5.20797 5.21531 5.28689 5.36031 5.45891 5.52275 5.64735 5.67632 5.76655 6.12154 6.22033 6.49612 6.73078 7.20422 7.51617 8.07830 8.69945 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.006348 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.854471 B = 4409.962618 C = 5331.356127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C 0.192 3.808 4 O -0.566 6.566 5 C -0.150 4.150 6 C 0.448 3.552 7 O -0.612 6.612 8 N -0.463 5.463 9 C 0.120 3.880 10 C -0.339 4.339 11 H 0.069 0.931 12 C -0.002 4.002 13 N -0.898 5.898 14 Si 0.983 3.017 15 H -0.268 1.268 16 H -0.271 1.271 17 H -0.278 1.278 18 C -0.087 4.087 19 C -0.127 4.127 20 C -0.131 4.131 21 C -0.134 4.134 22 C -0.128 4.128 23 C -0.120 4.120 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.381 0.619 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.272 0.728 36 H 0.115 0.885 37 H 0.133 0.867 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 -13.047 1.984 13.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.137 4.137 3 C 0.151 3.849 4 O -0.376 6.376 5 C -0.190 4.190 6 C 0.238 3.762 7 O -0.500 6.500 8 N -0.182 5.182 9 C -0.024 4.024 10 C -0.467 4.467 11 H 0.087 0.913 12 C -0.204 4.204 13 N -0.537 5.537 14 Si 0.807 3.193 15 H -0.193 1.193 16 H -0.196 1.196 17 H -0.204 1.204 18 C -0.087 4.087 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.146 4.146 23 C -0.138 4.138 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.233 0.767 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.133 0.867 37 H 0.150 0.850 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.397 -13.309 2.378 13.940 hybrid contribution 0.420 1.882 -0.463 1.983 sum 3.818 -11.427 1.915 12.200 Atomic orbital electron populations 1.21765 0.94269 1.02438 1.02114 1.21527 0.97343 0.91394 1.03417 1.19836 0.88328 0.93249 0.83493 1.86275 1.79004 1.31038 1.41261 1.22408 1.02316 0.93166 1.01099 1.20799 0.84624 0.88712 0.82072 1.90420 1.42983 1.77332 1.39227 1.43761 1.43522 1.12745 1.18208 1.21421 0.94065 0.96589 0.90277 1.19490 1.07625 0.87453 1.32174 0.91273 1.26020 0.95655 1.01694 0.96990 1.70053 1.10989 1.36113 1.36497 0.85152 0.78296 0.77563 0.78283 1.19306 1.19602 1.20389 1.20409 0.96214 0.98316 0.93793 1.21108 0.95378 1.00806 0.97208 1.21341 0.93905 1.00312 0.99366 1.21372 1.00753 1.00766 0.92334 1.21374 0.94305 1.00209 0.98721 1.21023 0.94456 1.00299 0.98036 0.93304 0.92194 0.90760 0.89174 0.91020 0.76744 0.88266 0.87495 0.93800 0.93155 0.91327 0.91859 0.86699 0.84957 0.84026 0.84229 0.86073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.26 71.98 0.67 -2.72 16 2 C -0.10 -2.50 5.20 30.60 0.16 -2.34 16 3 C 0.19 6.25 0.63 -11.54 -0.01 6.25 16 4 O -0.57 -20.75 11.30 -132.86 -1.50 -22.25 16 5 C -0.15 -5.21 2.58 29.85 0.08 -5.13 16 6 C 0.45 20.83 6.36 87.66 0.56 21.39 16 7 O -0.61 -32.04 12.48 13.04 0.16 -31.88 16 8 N -0.46 -23.39 3.01 -658.90 -1.98 -25.37 16 9 C 0.12 5.19 8.53 127.77 1.09 6.28 16 10 C -0.34 -19.16 9.22 84.04 0.78 -18.38 16 11 H 0.07 4.18 7.46 -2.91 -0.02 4.16 16 12 C 0.00 -0.10 5.05 84.93 0.43 0.33 16 13 N -0.90 -47.90 10.89 21.66 0.24 -47.67 16 14 Si 0.98 42.81 29.57 68.60 2.03 44.84 16 15 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 C -0.09 -2.97 3.13 -19.86 -0.06 -3.03 16 19 C -0.13 -4.28 8.28 22.27 0.18 -4.10 16 20 C -0.13 -4.02 10.05 22.27 0.22 -3.80 16 21 C -0.13 -3.78 10.05 22.27 0.22 -3.55 16 22 C -0.13 -3.72 10.05 22.27 0.22 -3.49 16 23 C -0.12 -3.94 9.35 22.27 0.21 -3.73 16 24 H 0.05 1.27 7.60 -2.38 -0.02 1.26 16 25 H 0.06 1.31 6.80 -2.39 -0.02 1.29 16 26 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.38 15.72 6.74 -74.06 -0.50 15.22 16 30 H 0.10 3.32 6.76 -2.38 -0.02 3.30 16 31 H 0.11 3.19 5.76 -2.39 -0.01 3.17 16 32 H 0.04 1.99 7.60 -2.39 -0.02 1.97 16 33 H 0.05 2.31 7.14 -2.38 -0.02 2.29 16 34 H 0.07 2.32 6.30 -2.38 -0.02 2.31 16 35 H 0.27 13.67 8.31 -92.70 -0.77 12.90 16 36 H 0.12 3.73 6.23 -2.91 -0.02 3.71 16 37 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 38 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.12 3.84 7.48 -2.91 -0.02 3.82 16 Total: -1.00 -65.23 319.09 4.24 -60.99 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: 0.55 Total: 37.38 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 4.75 Total: -16.04 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.75 Total: -73.04 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -1.34 Total: -54.13 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -65.23 4.24 -60.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840301030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.487 kcal (2) G-P(sol) polarization free energy of solvation -65.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds