Wall clock time and date at job start Mon Mar 30 2020 01:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46797 * 2 1 4 4 O 1.42899 * 109.47290 * 58.60361 * 3 2 1 5 5 C 1.53001 * 109.46981 * 178.60092 * 3 2 1 6 6 C 1.50696 * 109.47187 * 176.74565 * 5 3 2 7 7 O 1.21294 * 120.00234 * 4.90290 * 6 5 3 8 8 N 1.34777 * 119.99901 * 184.90452 * 6 5 3 9 9 C 1.46489 * 120.00248 * 359.97438 * 8 6 5 10 10 C 1.37100 * 119.99738 * 180.02562 * 8 6 5 11 11 H 1.08001 * 120.00480 * 24.27597 * 10 8 6 12 12 C 1.38951 * 119.99858 * 204.27280 * 10 8 6 13 13 N 1.31409 * 120.00260 * 11.72962 * 12 10 8 14 14 Si 1.86801 * 120.00099 * 191.72474 * 12 10 8 15 15 H 1.48507 * 109.46867 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47121 * 119.99980 * 14 12 10 17 17 H 1.48499 * 109.47264 * 240.00159 * 14 12 10 18 18 C 1.50699 * 109.47320 * 298.60302 * 3 2 1 19 19 C 1.38243 * 120.00048 * 90.00374 * 18 3 2 20 20 C 1.38235 * 119.99992 * 180.02562 * 19 18 3 21 21 C 1.38232 * 120.00040 * 359.94649 * 20 19 18 22 22 C 1.38240 * 119.99998 * 0.28565 * 21 20 19 23 23 C 1.38234 * 119.99889 * 359.53023 * 22 21 20 24 24 H 1.09004 * 109.47376 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47364 * 299.99507 * 1 2 3 26 26 H 1.08998 * 109.47473 * 59.99582 * 1 2 3 27 27 H 1.08998 * 109.46674 * 240.00248 * 2 1 3 28 28 H 1.08997 * 109.47017 * 120.00141 * 2 1 3 29 29 H 0.96697 * 114.00274 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.47304 * 296.75079 * 5 3 2 31 31 H 1.09007 * 109.46880 * 56.74740 * 5 3 2 32 32 H 1.09003 * 109.47357 * 87.45352 * 9 8 6 33 33 H 1.08995 * 109.47383 * 207.45231 * 9 8 6 34 34 H 1.09001 * 109.47589 * 327.45846 * 9 8 6 35 35 H 0.96991 * 120.00623 * 179.97438 * 13 12 10 36 36 H 1.08001 * 119.99632 * 359.97438 * 19 18 3 37 37 H 1.07997 * 119.99472 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.00322 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.00039 * 179.72205 * 22 21 20 40 40 H 1.08001 * 119.99947 * 180.20987 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5370 2.1256 1.1500 5 6 3.5696 1.4427 0.0352 6 6 4.0737 2.8605 -0.0454 7 8 3.2886 3.7850 -0.0336 8 7 5.3970 3.1014 -0.1306 9 6 6.3454 1.9850 -0.1443 10 6 5.8557 4.3913 -0.2034 11 1 5.2566 5.2004 0.1876 12 6 7.0914 4.6578 -0.7803 13 7 7.7158 3.7211 -1.4582 14 14 7.8651 6.3476 -0.5923 15 1 6.9674 7.2164 0.2107 16 1 9.1744 6.2187 0.0964 17 1 8.0687 6.9509 -1.9339 18 6 1.5661 2.1429 -1.2474 19 6 0.3578 2.8145 -1.2464 20 6 -0.0771 3.4564 -2.3908 21 6 0.6967 3.4278 -3.5358 22 6 1.9027 2.7521 -3.5383 23 6 2.3394 2.1134 -2.3928 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8211 3.0475 1.2154 30 1 3.9117 0.9877 0.9647 31 1 3.9525 0.8722 -0.8110 32 1 6.4868 1.6409 -1.1689 33 1 7.3009 2.3148 0.2633 34 1 5.9541 1.1683 0.4624 35 1 8.5781 3.9071 -1.8612 36 1 -0.2468 2.8369 -0.3517 37 1 -1.0213 3.9807 -2.3900 38 1 0.3572 3.9297 -4.4298 39 1 2.5052 2.7260 -4.4342 40 1 3.2833 1.5884 -2.3937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840301032.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:09 Heat of formation + Delta-G solvation = -56.998274 kcal Electronic energy + Delta-G solvation = -22676.122998 eV Core-core repulsion = 19456.033026 eV Total energy + Delta-G solvation = -3220.089972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.03909 -38.08132 -36.60765 -34.58858 -32.95222 -31.71325 -30.88031 -30.13799 -29.05388 -26.32837 -24.98523 -23.57043 -22.38090 -21.89156 -19.81947 -18.77233 -17.31365 -16.89042 -16.18985 -15.63126 -14.98775 -14.68806 -14.42013 -14.17985 -14.11153 -13.86660 -13.57257 -13.15898 -12.98035 -12.61665 -12.10368 -11.97194 -11.78886 -11.48838 -11.40493 -11.29190 -11.20720 -11.07437 -10.92539 -10.83041 -10.64242 -10.34469 -10.30459 -10.14166 -9.51800 -9.03820 -8.54154 -8.39776 -8.06546 -7.67670 -6.33917 -3.90410 1.84966 1.90588 3.13511 3.24178 3.30856 3.86895 4.11867 4.26213 4.65936 4.74539 5.00389 5.11172 5.21575 5.35821 5.39102 5.43139 5.50743 5.58774 5.73853 5.82492 5.92154 6.00649 6.06925 6.07907 6.14828 6.27165 6.31105 6.39637 6.48467 6.49564 6.56407 6.82067 6.92322 6.96685 7.08873 7.16412 7.48284 7.55107 8.11054 8.23743 8.47501 9.17569 9.40992 9.96007 10.70813 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020788 B = 0.006036 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.612983 B = 4637.915560 C = 5227.735250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C 0.196 3.804 4 O -0.562 6.562 5 C -0.162 4.162 6 C 0.450 3.550 7 O -0.584 6.584 8 N -0.444 5.444 9 C 0.111 3.889 10 C -0.303 4.303 11 H 0.098 0.902 12 C 0.030 3.970 13 N -0.883 5.883 14 Si 0.924 3.076 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 C -0.071 4.071 19 C -0.099 4.099 20 C -0.128 4.128 21 C -0.129 4.129 22 C -0.119 4.119 23 C -0.103 4.103 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.391 0.609 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.025 0.975 35 H 0.266 0.734 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.150 -7.252 -0.716 11.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C 0.154 3.846 4 O -0.374 6.374 5 C -0.203 4.203 6 C 0.238 3.762 7 O -0.470 6.470 8 N -0.162 5.162 9 C -0.033 4.033 10 C -0.431 4.431 11 H 0.116 0.884 12 C -0.173 4.173 13 N -0.523 5.523 14 Si 0.751 3.249 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.208 1.208 18 C -0.071 4.071 19 C -0.117 4.117 20 C -0.146 4.146 21 C -0.148 4.148 22 C -0.137 4.137 23 C -0.121 4.121 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.245 0.755 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.578 -7.369 -0.693 12.104 hybrid contribution 1.179 1.338 -0.277 1.804 sum -8.399 -6.031 -0.970 10.385 Atomic orbital electron populations 1.21740 0.95279 1.00796 1.02733 1.21495 0.96980 0.93591 1.02222 1.19600 0.90246 0.91303 0.83433 1.86263 1.75928 1.31110 1.44094 1.22393 0.96428 0.97976 1.03469 1.19920 0.82946 0.89608 0.83704 1.90431 1.54493 1.45683 1.56359 1.43558 1.03675 1.06724 1.62267 1.21484 0.94025 0.87435 1.00342 1.19672 1.02356 0.84233 1.36869 0.88447 1.25336 0.97623 0.99214 0.95092 1.69986 1.16119 1.33623 1.32553 0.85891 0.78837 0.82027 0.78136 1.19251 1.20691 1.20764 1.20197 0.94401 0.97558 0.94986 1.20826 0.96044 0.97116 0.97744 1.20998 0.99763 1.00265 0.93548 1.20989 0.95459 1.00227 0.98081 1.21012 0.96274 0.98239 0.98164 1.20979 0.98658 0.99630 0.92821 0.93399 0.91873 0.92403 0.90991 0.91184 0.75499 0.89580 0.89624 0.92923 0.90840 0.95622 0.92346 0.86150 0.86869 0.86950 0.86719 0.86598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.21 37.16 0.34 -1.54 16 2 C -0.11 -1.44 5.19 -26.73 -0.14 -1.58 16 3 C 0.20 3.28 0.66 -91.77 -0.06 3.22 16 4 O -0.56 -10.11 11.22 -52.75 -0.59 -10.70 16 5 C -0.16 -2.92 2.97 -27.88 -0.08 -3.00 16 6 C 0.45 10.40 6.41 -10.99 -0.07 10.33 16 7 O -0.58 -14.90 12.48 -11.97 -0.15 -15.05 16 8 N -0.44 -11.10 3.01 -122.20 -0.37 -11.46 16 9 C 0.11 2.44 8.37 59.84 0.50 2.94 16 10 C -0.30 -8.35 9.25 -14.93 -0.14 -8.49 16 11 H 0.10 2.82 7.44 -52.49 -0.39 2.43 16 12 C 0.03 0.80 5.07 -17.47 -0.09 0.71 16 13 N -0.88 -23.39 10.77 55.50 0.60 -22.79 16 14 Si 0.92 20.79 29.57 -169.99 -5.03 15.76 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 C -0.07 -1.25 2.66 -104.62 -0.28 -1.53 16 19 C -0.10 -1.66 7.55 -39.58 -0.30 -1.96 16 20 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 21 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 22 C -0.12 -2.02 10.05 -39.58 -0.40 -2.42 16 23 C -0.10 -1.87 8.34 -39.58 -0.33 -2.20 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.84 7.65 -51.93 -0.40 0.44 16 26 H 0.06 0.76 6.19 -51.93 -0.32 0.44 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.39 7.68 6.65 45.56 0.30 7.98 16 30 H 0.09 1.44 7.65 -51.93 -0.40 1.04 16 31 H 0.09 1.43 6.54 -51.93 -0.34 1.09 16 32 H 0.05 1.18 7.76 -51.93 -0.40 0.78 16 33 H 0.07 1.71 6.87 -51.93 -0.36 1.36 16 34 H 0.03 0.46 6.68 -51.93 -0.35 0.12 16 35 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 36 H 0.12 1.91 7.45 -52.49 -0.39 1.52 16 37 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.12 2.10 6.20 -52.49 -0.33 1.77 16 LS Contribution 318.17 15.07 4.79 4.79 Total: -1.00 -29.76 318.17 -7.62 -37.37 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -5.04 Total: 12.40 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -1.84 Total: -10.33 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.23 Total: -34.25 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.74 Total: -25.75 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.76 -7.62 -37.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840301032.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.626 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds