Wall clock time and date at job start Mon Mar 30 2020 01:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46797 * 2 1 4 4 O 1.42899 * 109.47290 * 58.60361 * 3 2 1 5 5 C 1.53001 * 109.46981 * 178.60092 * 3 2 1 6 6 C 1.50696 * 109.47187 * 176.74565 * 5 3 2 7 7 O 1.21294 * 120.00234 * 4.90290 * 6 5 3 8 8 N 1.34777 * 119.99901 * 184.90452 * 6 5 3 9 9 C 1.46489 * 120.00248 * 359.97438 * 8 6 5 10 10 C 1.37100 * 119.99738 * 180.02562 * 8 6 5 11 11 H 1.08001 * 120.00480 * 24.27597 * 10 8 6 12 12 C 1.38951 * 119.99858 * 204.27280 * 10 8 6 13 13 N 1.31409 * 120.00260 * 11.72962 * 12 10 8 14 14 Si 1.86801 * 120.00099 * 191.72474 * 12 10 8 15 15 H 1.48507 * 109.46867 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47121 * 119.99980 * 14 12 10 17 17 H 1.48499 * 109.47264 * 240.00159 * 14 12 10 18 18 C 1.50699 * 109.47320 * 298.60302 * 3 2 1 19 19 C 1.38243 * 120.00048 * 90.00374 * 18 3 2 20 20 C 1.38235 * 119.99992 * 180.02562 * 19 18 3 21 21 C 1.38232 * 120.00040 * 359.94649 * 20 19 18 22 22 C 1.38240 * 119.99998 * 0.28565 * 21 20 19 23 23 C 1.38234 * 119.99889 * 359.53023 * 22 21 20 24 24 H 1.09004 * 109.47376 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47364 * 299.99507 * 1 2 3 26 26 H 1.08998 * 109.47473 * 59.99582 * 1 2 3 27 27 H 1.08998 * 109.46674 * 240.00248 * 2 1 3 28 28 H 1.08997 * 109.47017 * 120.00141 * 2 1 3 29 29 H 0.96697 * 114.00274 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.47304 * 296.75079 * 5 3 2 31 31 H 1.09007 * 109.46880 * 56.74740 * 5 3 2 32 32 H 1.09003 * 109.47357 * 87.45352 * 9 8 6 33 33 H 1.08995 * 109.47383 * 207.45231 * 9 8 6 34 34 H 1.09001 * 109.47589 * 327.45846 * 9 8 6 35 35 H 0.96991 * 120.00623 * 179.97438 * 13 12 10 36 36 H 1.08001 * 119.99632 * 359.97438 * 19 18 3 37 37 H 1.07997 * 119.99472 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.00322 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.00039 * 179.72205 * 22 21 20 40 40 H 1.08001 * 119.99947 * 180.20987 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5370 2.1256 1.1500 5 6 3.5696 1.4427 0.0352 6 6 4.0737 2.8605 -0.0454 7 8 3.2886 3.7850 -0.0336 8 7 5.3970 3.1014 -0.1306 9 6 6.3454 1.9850 -0.1443 10 6 5.8557 4.3913 -0.2034 11 1 5.2566 5.2004 0.1876 12 6 7.0914 4.6578 -0.7803 13 7 7.7158 3.7211 -1.4582 14 14 7.8651 6.3476 -0.5923 15 1 6.9674 7.2164 0.2107 16 1 9.1744 6.2187 0.0964 17 1 8.0687 6.9509 -1.9339 18 6 1.5661 2.1429 -1.2474 19 6 0.3578 2.8145 -1.2464 20 6 -0.0771 3.4564 -2.3908 21 6 0.6967 3.4278 -3.5358 22 6 1.9027 2.7521 -3.5383 23 6 2.3394 2.1134 -2.3928 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8211 3.0475 1.2154 30 1 3.9117 0.9877 0.9647 31 1 3.9525 0.8722 -0.8110 32 1 6.4868 1.6409 -1.1689 33 1 7.3009 2.3148 0.2633 34 1 5.9541 1.1683 0.4624 35 1 8.5781 3.9071 -1.8612 36 1 -0.2468 2.8369 -0.3517 37 1 -1.0213 3.9807 -2.3900 38 1 0.3572 3.9297 -4.4298 39 1 2.5052 2.7260 -4.4342 40 1 3.2833 1.5884 -2.3937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840301032.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:09 Heat of formation + Delta-G solvation = -74.078169 kcal Electronic energy + Delta-G solvation = -22676.863638 eV Core-core repulsion = 19456.033026 eV Total energy + Delta-G solvation = -3220.830612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.48736 -39.70741 -38.00155 -36.47775 -34.26164 -33.61457 -32.18615 -31.37483 -30.49877 -28.15897 -26.62888 -25.14461 -23.59788 -23.16204 -21.21396 -20.42750 -18.86433 -18.62145 -17.86070 -17.08496 -16.65168 -16.19035 -16.10741 -15.61168 -15.53235 -15.38941 -14.72011 -14.59694 -14.36799 -14.07677 -13.64301 -13.48721 -13.24365 -13.17532 -13.08447 -12.70502 -12.66092 -12.53070 -12.45966 -12.27552 -12.13980 -11.96355 -11.80938 -11.42225 -11.01817 -10.86249 -10.31240 -9.69684 -9.63713 -9.42025 -8.32794 -5.97007 0.57426 0.60514 1.34436 1.39537 1.52545 2.06810 2.27222 2.97105 3.06214 3.11131 3.35218 3.74663 3.83895 3.93623 4.15680 4.20070 4.30721 4.42438 4.46106 4.55876 4.61312 4.64960 4.72694 4.79787 4.89896 5.02827 5.07558 5.12539 5.18069 5.22069 5.32411 5.36938 5.45956 5.50326 5.65253 5.68429 5.77741 6.12055 6.22364 6.49207 6.74884 7.20304 7.51222 8.06987 8.70182 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020788 B = 0.006036 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.612983 B = 4637.915560 C = 5227.735250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C 0.193 3.807 4 O -0.564 6.564 5 C -0.153 4.153 6 C 0.448 3.552 7 O -0.612 6.612 8 N -0.465 5.465 9 C 0.121 3.879 10 C -0.335 4.335 11 H 0.070 0.930 12 C -0.003 4.003 13 N -0.898 5.898 14 Si 0.984 3.016 15 H -0.274 1.274 16 H -0.267 1.267 17 H -0.278 1.278 18 C -0.081 4.081 19 C -0.112 4.112 20 C -0.130 4.130 21 C -0.134 4.134 22 C -0.135 4.135 23 C -0.128 4.128 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.382 0.618 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.271 0.729 36 H 0.125 0.875 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.125 0.875 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.680 -8.040 -0.922 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.141 4.141 3 C 0.151 3.849 4 O -0.374 6.374 5 C -0.193 4.193 6 C 0.238 3.762 7 O -0.499 6.499 8 N -0.183 5.183 9 C -0.022 4.022 10 C -0.464 4.464 11 H 0.088 0.912 12 C -0.205 4.205 13 N -0.538 5.538 14 Si 0.808 3.192 15 H -0.199 1.199 16 H -0.192 1.192 17 H -0.204 1.204 18 C -0.081 4.081 19 C -0.130 4.130 20 C -0.148 4.148 21 C -0.152 4.152 22 C -0.153 4.153 23 C -0.146 4.146 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.234 0.766 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.143 0.857 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.143 0.857 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.106 -8.194 -0.899 13.041 hybrid contribution 1.273 1.582 -0.238 2.044 sum -8.833 -6.612 -1.137 11.092 Atomic orbital electron populations 1.21694 0.94507 1.02050 1.01844 1.21546 0.97660 0.91327 1.03520 1.19823 0.89333 0.92947 0.82771 1.86270 1.75968 1.30366 1.44786 1.22394 0.97479 0.94480 1.04978 1.20760 0.82181 0.91478 0.81747 1.90407 1.55170 1.47392 1.56977 1.43796 1.04867 1.06573 1.63115 1.21409 0.92982 0.87507 1.00338 1.19576 1.03182 0.85129 1.38483 0.91191 1.26016 0.97487 1.02543 0.94418 1.70054 1.16356 1.34892 1.32461 0.85013 0.78197 0.77930 0.78043 1.19916 1.19165 1.20373 1.20324 0.94757 0.97938 0.95083 1.21010 0.96073 0.97427 0.98502 1.21383 1.00766 0.99598 0.93014 1.21344 0.94856 0.99728 0.99244 1.21297 0.97193 0.98423 0.98355 1.21082 0.98828 1.00873 0.93805 0.91064 0.92838 0.93190 0.89596 0.89919 0.76640 0.87738 0.88036 0.93910 0.92721 0.91664 0.91907 0.85747 0.84080 0.84177 0.85657 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.21 71.98 0.66 -2.68 16 2 C -0.10 -2.58 5.19 30.60 0.16 -2.42 16 3 C 0.19 6.24 0.66 -11.54 -0.01 6.23 16 4 O -0.56 -19.95 11.22 -132.23 -1.48 -21.43 16 5 C -0.15 -5.33 2.97 29.85 0.09 -5.24 16 6 C 0.45 20.84 6.41 87.66 0.56 21.40 16 7 O -0.61 -31.91 12.48 13.67 0.17 -31.74 16 8 N -0.46 -23.47 3.01 -658.92 -1.98 -25.45 16 9 C 0.12 5.26 8.37 127.77 1.07 6.33 16 10 C -0.34 -18.91 9.25 84.04 0.78 -18.14 16 11 H 0.07 4.23 7.44 -2.91 -0.02 4.21 16 12 C 0.00 -0.18 5.07 84.93 0.43 0.26 16 13 N -0.90 -47.65 10.77 21.66 0.23 -47.41 16 14 Si 0.98 42.84 29.57 68.60 2.03 44.87 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 16 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 17 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 18 C -0.08 -2.80 2.66 -19.86 -0.05 -2.85 16 19 C -0.11 -3.67 7.55 22.27 0.17 -3.50 16 20 C -0.13 -3.84 10.05 22.27 0.22 -3.62 16 21 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 22 C -0.13 -4.50 10.05 22.27 0.22 -4.28 16 23 C -0.13 -4.62 8.34 22.27 0.19 -4.44 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.33 7.65 -2.39 -0.02 1.32 16 26 H 0.05 1.23 6.19 -2.39 -0.01 1.22 16 27 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.38 15.17 6.65 -74.06 -0.49 14.67 16 30 H 0.10 3.25 7.65 -2.39 -0.02 3.23 16 31 H 0.10 3.23 6.54 -2.38 -0.02 3.21 16 32 H 0.04 1.91 7.76 -2.39 -0.02 1.89 16 33 H 0.05 2.55 6.87 -2.39 -0.02 2.53 16 34 H 0.06 2.26 6.68 -2.39 -0.02 2.24 16 35 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 36 H 0.12 3.87 7.45 -2.91 -0.02 3.85 16 37 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 38 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.13 3.76 8.06 -2.91 -0.02 3.73 16 40 H 0.11 3.95 6.20 -2.91 -0.02 3.93 16 Total: -1.00 -64.57 318.17 4.23 -60.34 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 0.55 Total: 37.54 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 4.71 Total: -16.72 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -1.75 Total: -72.87 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -1.31 Total: -53.17 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -64.57 4.23 -60.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840301032.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.736 kcal (2) G-P(sol) polarization free energy of solvation -64.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds