Wall clock time and date at job start Mon Mar 30 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47401 * 2 1 4 4 O 1.42908 * 109.46545 * 61.59552 * 3 2 1 5 5 C 1.52996 * 109.47389 * 301.59962 * 3 2 1 6 6 C 1.50694 * 109.47562 * 185.42860 * 5 3 2 7 7 O 1.21291 * 119.99640 * 353.93525 * 6 5 3 8 8 N 1.34774 * 120.00447 * 173.65920 * 6 5 3 9 9 C 1.46499 * 120.00136 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47132 * 179.97438 * 9 8 6 11 11 H 1.07999 * 119.99907 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00171 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00017 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 120.00326 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46622 * 89.99891 * 14 12 10 16 16 H 1.48495 * 109.47259 * 210.00066 * 14 12 10 17 17 H 1.48496 * 109.46869 * 330.00083 * 14 12 10 18 18 C 1.50697 * 109.47254 * 181.59526 * 3 2 1 19 19 C 1.38235 * 119.99972 * 89.72940 * 18 3 2 20 20 C 1.38236 * 119.99948 * 179.81076 * 19 18 3 21 21 C 1.38238 * 119.99664 * 0.39457 * 20 19 18 22 22 C 1.38232 * 120.00446 * 359.85871 * 21 20 19 23 23 C 1.38234 * 119.99831 * 270.00339 * 18 3 2 24 24 H 1.09002 * 109.47150 * 297.59658 * 1 2 3 25 25 H 1.08996 * 109.46839 * 57.59397 * 1 2 3 26 26 H 1.08998 * 109.47187 * 177.59496 * 1 2 3 27 27 H 1.09001 * 109.47193 * 240.00168 * 2 1 3 28 28 H 1.09002 * 109.46999 * 120.00598 * 2 1 3 29 29 H 0.96705 * 113.99063 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47273 * 65.42309 * 5 3 2 31 31 H 1.09005 * 109.46831 * 305.42814 * 5 3 2 32 32 H 0.97006 * 119.99741 * 359.97438 * 8 6 5 33 33 H 1.08994 * 109.47262 * 299.99757 * 9 8 6 34 34 H 1.09004 * 109.46948 * 60.00007 * 9 8 6 35 35 H 0.96998 * 120.00050 * 180.02562 * 13 12 10 36 36 H 1.08001 * 119.99661 * 359.97438 * 19 18 3 37 37 H 1.07996 * 119.99904 * 180.23297 * 20 19 18 38 38 H 1.08009 * 119.99707 * 179.83197 * 21 20 19 39 39 H 1.07995 * 120.00000 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.00507 * 359.97438 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 1.5946 2.1051 1.1852 5 6 1.4976 2.1753 -1.2286 6 6 2.1048 3.5526 -1.3008 7 8 2.8072 3.9538 -0.3971 8 7 1.8720 4.3364 -2.3722 9 6 2.4628 5.6751 -2.4426 10 6 2.0517 6.3384 -3.7318 11 1 1.4137 5.8153 -4.4287 12 6 2.4899 7.6131 -4.0216 13 7 3.2672 8.2500 -3.1731 14 14 1.9809 8.4352 -5.6200 15 1 0.7165 9.1852 -5.4099 16 1 3.0465 9.3732 -6.0555 17 1 1.7748 7.4004 -6.6649 18 6 3.5465 1.4426 -0.0396 19 6 4.2061 1.4481 -1.2544 20 6 5.5879 1.4522 -1.2907 21 6 6.3102 1.4425 -0.1121 22 6 5.6508 1.4317 1.1028 23 6 4.2689 1.4315 1.1390 24 1 -0.3633 0.4761 0.9108 25 1 -0.3633 0.5507 -0.8676 26 1 -0.3633 -1.0267 -0.0431 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8821 3.0260 1.2525 30 1 0.4135 2.2597 -1.1520 31 1 1.7558 1.6167 -2.1283 32 1 1.3138 4.0138 -3.0970 33 1 2.1137 6.2712 -1.5995 34 1 3.5493 5.5951 -2.4060 35 1 3.5753 9.1470 -3.3768 36 1 3.6416 1.4519 -2.1752 37 1 6.1032 1.4603 -2.2398 38 1 7.3900 1.4430 -0.1404 39 1 6.2151 1.4237 2.0235 40 1 3.7536 1.4231 2.0882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840436127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:12 Heat of formation + Delta-G solvation = -76.764441 kcal Electronic energy + Delta-G solvation = -21925.628762 eV Core-core repulsion = 18704.681665 eV Total energy + Delta-G solvation = -3220.947098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.36025 -38.31930 -36.89502 -34.19696 -33.36201 -32.33683 -31.06283 -30.60053 -29.30197 -26.98460 -25.13172 -22.65663 -22.22090 -21.98653 -20.16481 -19.53536 -17.53355 -17.20517 -16.28106 -15.78726 -15.28907 -15.01138 -14.74276 -14.40564 -14.19497 -13.95783 -13.75909 -13.60117 -13.19383 -12.63804 -12.54861 -12.48972 -12.03158 -11.96085 -11.74977 -11.52092 -11.31082 -11.01884 -10.95764 -10.92751 -10.80086 -10.49455 -10.34570 -9.83187 -9.42425 -9.14158 -8.76715 -8.63780 -8.38772 -7.91006 -6.18984 -4.26173 1.60602 1.68091 3.22220 3.28477 3.30682 3.31730 4.00474 4.04128 4.33920 4.37728 4.67534 4.84639 5.03878 5.16053 5.17241 5.22508 5.31187 5.32959 5.46607 5.53533 5.56777 5.71952 5.79824 5.84453 5.90359 6.00505 6.12722 6.21567 6.27693 6.34189 6.70023 6.74754 6.82028 7.25380 7.27417 7.38006 7.49205 7.62836 7.92544 7.96000 8.58158 8.74578 9.05716 9.40641 10.91132 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.004740 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.889230 B = 5906.225079 C = 6719.338737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.104 4.104 3 C 0.196 3.804 4 O -0.558 6.558 5 C -0.176 4.176 6 C 0.499 3.501 7 O -0.550 6.550 8 N -0.711 5.711 9 C 0.251 3.749 10 C -0.544 4.544 11 H 0.062 0.938 12 C 0.064 3.936 13 N -0.885 5.885 14 Si 0.903 3.097 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.084 4.084 19 C -0.110 4.110 20 C -0.117 4.117 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.100 4.100 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.390 0.610 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.390 0.610 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.266 0.734 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.106 -16.953 4.582 17.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C 0.154 3.846 4 O -0.369 6.369 5 C -0.216 4.216 6 C 0.284 3.716 7 O -0.430 6.430 8 N -0.358 5.358 9 C 0.130 3.870 10 C -0.583 4.583 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.522 5.522 14 Si 0.730 3.270 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.084 4.084 19 C -0.128 4.128 20 C -0.135 4.135 21 C -0.144 4.144 22 C -0.140 4.140 23 C -0.118 4.118 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.243 0.757 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.222 0.778 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.762 -17.009 5.354 17.848 hybrid contribution -0.125 1.154 -1.488 1.887 sum -0.887 -15.856 3.865 16.344 Atomic orbital electron populations 1.21785 0.95064 1.01251 1.02742 1.21508 0.96655 0.93287 1.02730 1.19599 0.88410 0.92181 0.84360 1.86334 1.77978 1.31411 1.41140 1.22605 1.02943 0.95441 1.00616 1.20377 0.81436 0.86593 0.83209 1.90604 1.39201 1.74877 1.38362 1.46470 1.50787 1.18516 1.20058 1.19083 0.94040 0.76629 0.97214 1.21222 1.32292 1.00638 1.04101 0.91960 1.24947 0.94699 0.96979 0.97328 1.69975 1.33380 1.13158 1.35728 0.86426 0.78308 0.79318 0.82931 1.20435 1.20985 1.19753 1.20254 0.95597 0.98955 0.93595 1.20957 0.94579 1.00135 0.97151 1.21045 0.94127 1.00255 0.98102 1.21062 0.99474 1.01097 0.92769 1.21057 0.94506 1.00876 0.97600 1.20851 0.93675 0.99317 0.97955 0.91715 0.92497 0.92958 0.90787 0.91011 0.75694 0.87989 0.88698 0.77767 0.95613 0.95570 0.92440 0.86645 0.86449 0.86621 0.86548 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.43 37.16 0.35 -1.15 16 2 C -0.10 -1.15 5.19 -26.73 -0.14 -1.29 16 3 C 0.20 2.69 0.63 -91.78 -0.06 2.63 16 4 O -0.56 -8.48 11.40 -51.49 -0.59 -9.07 16 5 C -0.18 -2.41 3.87 -27.89 -0.11 -2.52 16 6 C 0.50 9.36 6.50 -10.99 -0.07 9.29 16 7 O -0.55 -12.12 12.76 -10.71 -0.14 -12.26 16 8 N -0.71 -14.47 5.55 -61.48 -0.34 -14.81 16 9 C 0.25 6.55 5.43 -5.20 -0.03 6.53 16 10 C -0.54 -14.63 9.28 -34.44 -0.32 -14.95 16 11 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 14 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 18 C -0.08 -1.26 3.11 -104.63 -0.33 -1.58 16 19 C -0.11 -1.67 8.22 -39.58 -0.33 -1.99 16 20 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 21 C -0.13 -1.75 10.05 -39.58 -0.40 -2.14 16 22 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 23 C -0.10 -1.48 9.35 -39.58 -0.37 -1.85 16 24 H 0.06 0.71 7.80 -51.93 -0.40 0.31 16 25 H 0.06 0.53 6.39 -51.93 -0.33 0.20 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.39 6.48 6.81 45.56 0.31 6.79 16 30 H 0.10 1.26 6.65 -51.93 -0.35 0.91 16 31 H 0.09 1.10 6.84 -51.93 -0.35 0.74 16 32 H 0.39 6.83 8.32 -40.82 -0.34 6.49 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.12 1.62 6.23 -52.49 -0.33 1.29 16 37 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.12 1.71 7.48 -52.48 -0.39 1.31 16 LS Contribution 327.77 15.07 4.94 4.94 Total: -1.00 -31.37 327.77 -8.20 -39.56 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -5.10 Total: 12.76 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -2.68 Total: -11.58 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.40 Total: -40.08 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.72 Total: -21.32 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.37 -8.20 -39.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840436127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.200 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds