Wall clock time and date at job start Mon Mar 30 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47401 * 2 1 4 4 O 1.42908 * 109.46545 * 61.59552 * 3 2 1 5 5 C 1.52996 * 109.47389 * 301.59962 * 3 2 1 6 6 C 1.50694 * 109.47562 * 185.42860 * 5 3 2 7 7 O 1.21291 * 119.99640 * 353.93525 * 6 5 3 8 8 N 1.34774 * 120.00447 * 173.65920 * 6 5 3 9 9 C 1.46499 * 120.00136 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47132 * 179.97438 * 9 8 6 11 11 H 1.07999 * 119.99907 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00171 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00017 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 120.00326 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46622 * 89.99891 * 14 12 10 16 16 H 1.48495 * 109.47259 * 210.00066 * 14 12 10 17 17 H 1.48496 * 109.46869 * 330.00083 * 14 12 10 18 18 C 1.50697 * 109.47254 * 181.59526 * 3 2 1 19 19 C 1.38235 * 119.99972 * 89.72940 * 18 3 2 20 20 C 1.38236 * 119.99948 * 179.81076 * 19 18 3 21 21 C 1.38238 * 119.99664 * 0.39457 * 20 19 18 22 22 C 1.38232 * 120.00446 * 359.85871 * 21 20 19 23 23 C 1.38234 * 119.99831 * 270.00339 * 18 3 2 24 24 H 1.09002 * 109.47150 * 297.59658 * 1 2 3 25 25 H 1.08996 * 109.46839 * 57.59397 * 1 2 3 26 26 H 1.08998 * 109.47187 * 177.59496 * 1 2 3 27 27 H 1.09001 * 109.47193 * 240.00168 * 2 1 3 28 28 H 1.09002 * 109.46999 * 120.00598 * 2 1 3 29 29 H 0.96705 * 113.99063 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47273 * 65.42309 * 5 3 2 31 31 H 1.09005 * 109.46831 * 305.42814 * 5 3 2 32 32 H 0.97006 * 119.99741 * 359.97438 * 8 6 5 33 33 H 1.08994 * 109.47262 * 299.99757 * 9 8 6 34 34 H 1.09004 * 109.46948 * 60.00007 * 9 8 6 35 35 H 0.96998 * 120.00050 * 180.02562 * 13 12 10 36 36 H 1.08001 * 119.99661 * 359.97438 * 19 18 3 37 37 H 1.07996 * 119.99904 * 180.23297 * 20 19 18 38 38 H 1.08009 * 119.99707 * 179.83197 * 21 20 19 39 39 H 1.07995 * 120.00000 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.00507 * 359.97438 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 1.5946 2.1051 1.1852 5 6 1.4976 2.1753 -1.2286 6 6 2.1048 3.5526 -1.3008 7 8 2.8072 3.9538 -0.3971 8 7 1.8720 4.3364 -2.3722 9 6 2.4628 5.6751 -2.4426 10 6 2.0517 6.3384 -3.7318 11 1 1.4137 5.8153 -4.4287 12 6 2.4899 7.6131 -4.0216 13 7 3.2672 8.2500 -3.1731 14 14 1.9809 8.4352 -5.6200 15 1 0.7165 9.1852 -5.4099 16 1 3.0465 9.3732 -6.0555 17 1 1.7748 7.4004 -6.6649 18 6 3.5465 1.4426 -0.0396 19 6 4.2061 1.4481 -1.2544 20 6 5.5879 1.4522 -1.2907 21 6 6.3102 1.4425 -0.1121 22 6 5.6508 1.4317 1.1028 23 6 4.2689 1.4315 1.1390 24 1 -0.3633 0.4761 0.9108 25 1 -0.3633 0.5507 -0.8676 26 1 -0.3633 -1.0267 -0.0431 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8821 3.0260 1.2525 30 1 0.4135 2.2597 -1.1520 31 1 1.7558 1.6167 -2.1283 32 1 1.3138 4.0138 -3.0970 33 1 2.1137 6.2712 -1.5995 34 1 3.5493 5.5951 -2.4060 35 1 3.5753 9.1470 -3.3768 36 1 3.6416 1.4519 -2.1752 37 1 6.1032 1.4603 -2.2398 38 1 7.3900 1.4430 -0.1404 39 1 6.2151 1.4237 2.0235 40 1 3.7536 1.4231 2.0882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840436127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:12 Heat of formation + Delta-G solvation = -97.594853 kcal Electronic energy + Delta-G solvation = -21926.532037 eV Core-core repulsion = 18704.681665 eV Total energy + Delta-G solvation = -3221.850372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.61347 -39.70521 -38.08060 -36.06685 -34.54979 -34.18930 -32.09097 -31.69573 -30.68896 -28.77423 -26.25167 -24.54771 -23.32759 -23.02884 -21.64026 -20.80932 -18.99925 -18.59749 -17.57651 -17.47737 -16.86134 -16.43973 -16.26208 -15.61587 -15.54750 -15.18741 -14.95647 -14.66500 -14.34664 -14.20546 -14.05498 -13.82206 -13.56419 -13.30130 -12.95703 -12.90431 -12.71571 -12.62447 -12.30708 -12.23589 -11.95084 -11.77160 -11.53902 -11.47413 -10.95800 -10.80444 -10.71467 -9.81559 -9.75679 -9.49605 -8.29580 -6.45994 0.50366 0.55382 1.42529 1.44533 1.55662 1.80360 2.31854 2.59550 2.91353 3.05602 3.27911 3.63635 3.72137 3.87506 4.12096 4.15836 4.27029 4.36361 4.43420 4.55650 4.57177 4.64298 4.75322 4.81490 5.04716 5.10580 5.14016 5.17387 5.17871 5.25961 5.29443 5.48955 5.52937 5.59783 5.64386 5.67833 5.71576 5.85657 6.17028 6.64067 6.69218 6.92135 7.23898 7.52418 8.82418 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.004740 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.889230 B = 5906.225079 C = 6719.338737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C 0.192 3.808 4 O -0.563 6.563 5 C -0.162 4.162 6 C 0.498 3.502 7 O -0.585 6.585 8 N -0.708 5.708 9 C 0.271 3.729 10 C -0.556 4.556 11 H 0.083 0.917 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.982 3.018 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.255 1.255 18 C -0.094 4.094 19 C -0.129 4.129 20 C -0.133 4.133 21 C -0.136 4.136 22 C -0.130 4.130 23 C -0.119 4.119 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.381 0.619 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.407 0.593 33 H -0.014 1.014 34 H -0.015 1.015 35 H 0.268 0.732 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.245 -18.432 2.898 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.137 4.137 3 C 0.151 3.849 4 O -0.373 6.373 5 C -0.202 4.202 6 C 0.285 3.715 7 O -0.467 6.467 8 N -0.358 5.358 9 C 0.148 3.852 10 C -0.593 4.593 11 H 0.101 0.899 12 C -0.195 4.195 13 N -0.570 5.570 14 Si 0.805 3.195 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.179 1.179 18 C -0.095 4.095 19 C -0.147 4.147 20 C -0.151 4.151 21 C -0.154 4.154 22 C -0.147 4.147 23 C -0.137 4.137 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.111 0.889 28 H 0.087 0.913 29 H 0.232 0.768 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.242 0.758 33 H 0.004 0.996 34 H 0.003 0.997 35 H 0.077 0.923 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.932 -18.548 3.664 19.005 hybrid contribution 0.284 1.577 -0.872 1.824 sum -1.648 -16.971 2.792 17.278 Atomic orbital electron populations 1.21781 0.93996 1.02521 1.02354 1.21531 0.97487 0.91165 1.03531 1.19854 0.87873 0.93530 0.83678 1.86342 1.77959 1.30738 1.42213 1.22617 1.03656 0.91826 1.02108 1.21272 0.80449 0.87992 0.81759 1.90597 1.40617 1.75970 1.39482 1.46203 1.51246 1.16774 1.21549 1.18456 0.91687 0.79131 0.95925 1.21630 1.32288 1.01058 1.04371 0.89908 1.26037 0.94405 0.97792 1.01250 1.70139 1.34914 1.13686 1.38241 0.85196 0.77820 0.78272 0.78180 1.19642 1.21054 1.17880 1.20472 0.96475 0.98836 0.93673 1.21174 0.95116 1.00822 0.97561 1.21376 0.94387 1.00206 0.99154 1.21400 1.00800 1.00629 0.92542 1.21392 0.94476 1.00149 0.98724 1.21054 0.94404 1.00041 0.98195 0.93195 0.91646 0.91038 0.88943 0.91314 0.76769 0.85807 0.85651 0.75786 0.99648 0.99723 0.92327 0.85785 0.85094 0.84377 0.84401 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.43 71.98 0.68 -1.87 16 2 C -0.10 -1.97 5.19 30.59 0.16 -1.81 16 3 C 0.19 5.01 0.63 -11.54 -0.01 5.01 16 4 O -0.56 -17.00 11.40 -133.43 -1.52 -18.52 16 5 C -0.16 -4.12 3.87 29.84 0.12 -4.00 16 6 C 0.50 18.57 6.50 87.66 0.57 19.14 16 7 O -0.58 -26.50 12.76 12.48 0.16 -26.34 16 8 N -0.71 -28.73 5.55 -466.80 -2.59 -31.32 16 9 C 0.27 14.63 5.43 85.63 0.46 15.10 16 10 C -0.56 -29.88 9.28 25.60 0.24 -29.65 16 11 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 12 C 0.00 0.26 5.46 84.65 0.46 0.72 16 13 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 14 Si 0.98 42.03 29.54 68.60 2.03 44.06 16 15 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 17 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 18 C -0.09 -2.79 3.11 -19.87 -0.06 -2.85 16 19 C -0.13 -3.81 8.22 22.27 0.18 -3.63 16 20 C -0.13 -3.82 10.05 22.27 0.22 -3.60 16 21 C -0.14 -3.67 10.05 22.27 0.22 -3.45 16 22 C -0.13 -3.54 10.05 22.27 0.22 -3.32 16 23 C -0.12 -3.53 9.35 22.27 0.21 -3.32 16 24 H 0.05 1.00 7.80 -2.39 -0.02 0.98 16 25 H 0.06 1.00 6.39 -2.39 -0.02 0.98 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.38 13.01 6.81 -74.05 -0.50 12.51 16 30 H 0.12 2.68 6.65 -2.39 -0.02 2.66 16 31 H 0.13 2.47 6.84 -2.38 -0.02 2.45 16 32 H 0.41 13.60 8.32 -92.70 -0.77 12.83 16 33 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 34 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 35 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.12 3.30 6.23 -2.91 -0.02 3.28 16 37 H 0.13 3.25 8.06 -2.91 -0.02 3.22 16 38 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 39 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 40 H 0.12 3.51 7.48 -2.91 -0.02 3.49 16 Total: -1.00 -69.99 327.77 1.82 -68.17 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: -0.22 Total: 37.27 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 3.68 Total: -17.53 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -2.30 Total: -87.11 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -1.36 Total: -44.86 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -69.99 1.82 -68.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840436127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.421 kcal (2) G-P(sol) polarization free energy of solvation -69.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds