Wall clock time and date at job start Mon Mar 30 2020 01:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47693 * 2 1 4 4 O 1.42896 * 109.47282 * 58.80080 * 3 2 1 5 5 C 1.52995 * 109.47382 * 178.80815 * 3 2 1 6 6 C 1.50701 * 109.47156 * 176.13029 * 5 3 2 7 7 O 1.21278 * 120.00135 * 5.43833 * 6 5 3 8 8 N 1.34778 * 120.00022 * 185.43416 * 6 5 3 9 9 C 1.46501 * 120.00062 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.46944 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00187 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99621 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99991 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00214 * 359.97438 * 12 10 9 15 15 H 1.48509 * 109.47143 * 90.00167 * 14 12 10 16 16 H 1.48495 * 109.47314 * 209.99866 * 14 12 10 17 17 H 1.48497 * 109.47168 * 330.00323 * 14 12 10 18 18 C 1.50700 * 109.46772 * 298.80546 * 3 2 1 19 19 C 1.38234 * 120.00229 * 89.99976 * 18 3 2 20 20 C 1.38232 * 120.00291 * 180.02562 * 19 18 3 21 21 C 1.38235 * 119.99997 * 359.95691 * 20 19 18 22 22 C 1.38230 * 119.99686 * 0.27808 * 21 20 19 23 23 C 1.38232 * 120.00486 * 359.53018 * 22 21 20 24 24 H 1.08999 * 109.47232 * 300.00629 * 1 2 3 25 25 H 1.09001 * 109.46966 * 59.99922 * 1 2 3 26 26 H 1.09002 * 109.47667 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47232 * 239.99371 * 2 1 3 28 28 H 1.09001 * 109.46966 * 120.00078 * 2 1 3 29 29 H 0.96703 * 114.00275 * 180.02562 * 4 3 2 30 30 H 1.09006 * 109.46932 * 296.13025 * 5 3 2 31 31 H 1.09001 * 109.47206 * 56.13027 * 5 3 2 32 32 H 0.96998 * 120.00021 * 0.02562 * 8 6 5 33 33 H 1.09006 * 109.46878 * 299.99763 * 9 8 6 34 34 H 1.08997 * 109.47124 * 60.00092 * 9 8 6 35 35 H 0.96994 * 119.99915 * 180.02562 * 13 12 10 36 36 H 1.08004 * 119.99995 * 359.97438 * 19 18 3 37 37 H 1.08007 * 119.99948 * 179.97438 * 20 19 18 38 38 H 1.08000 * 119.99995 * 180.02562 * 21 20 19 39 39 H 1.08010 * 119.99515 * 179.72790 * 22 21 20 40 40 H 1.08002 * 120.00338 * 180.21068 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 1.5410 2.1242 1.1524 5 6 3.5697 1.4424 0.0300 6 6 4.0740 2.8593 -0.0658 7 8 3.2900 3.7844 -0.0504 8 7 5.3964 3.0984 -0.1686 9 6 5.8867 4.4759 -0.2612 10 6 7.3900 4.4679 -0.3669 11 1 7.9265 3.5306 -0.3648 12 6 8.0803 5.6573 -0.4662 13 7 9.3923 5.6504 -0.5579 14 14 7.1523 7.2784 -0.4705 15 1 7.0042 7.7677 0.9238 16 1 7.9062 8.2783 -1.2685 17 1 5.8086 7.0779 -1.0701 18 6 1.5621 2.1442 -1.2450 19 6 0.3539 2.8158 -1.2393 20 6 -0.0848 3.4591 -2.3815 21 6 0.6851 3.4315 -3.5292 22 6 1.8910 2.7558 -3.5364 23 6 2.3316 2.1158 -2.3931 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.8248 3.0463 1.2175 30 1 3.9148 0.9962 0.9628 31 1 3.9497 0.8638 -0.8120 32 1 6.0236 2.3585 -0.1813 33 1 5.4633 4.9536 -1.1448 34 1 5.5876 5.0286 0.6293 35 1 9.8780 6.4871 -0.6274 36 1 -0.2477 2.8373 -0.3426 37 1 -1.0290 3.9835 -2.3770 38 1 0.3426 3.9344 -4.4215 39 1 2.4905 2.7305 -4.4345 40 1 3.2754 1.5908 -2.3977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840436131.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:15 Heat of formation + Delta-G solvation = -73.195872 kcal Electronic energy + Delta-G solvation = -22037.137702 eV Core-core repulsion = 18816.345349 eV Total energy + Delta-G solvation = -3220.792353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.48800 -38.50591 -36.91731 -34.33206 -33.29021 -32.40112 -31.33017 -30.43853 -29.72600 -27.71892 -24.73153 -22.70432 -22.22837 -21.97480 -20.11217 -19.78327 -17.65081 -17.27788 -16.35881 -15.99415 -15.46658 -15.15719 -14.64267 -14.62095 -14.43905 -14.06690 -13.82868 -13.43609 -13.29631 -12.96765 -12.61932 -12.44399 -12.29498 -12.15057 -11.73235 -11.57997 -11.48557 -11.14423 -11.04527 -10.93961 -10.79100 -10.52521 -10.01007 -9.91189 -9.53374 -9.31286 -8.81633 -8.70935 -8.48409 -8.19311 -6.24706 -4.27195 1.52848 1.59854 3.14616 3.24303 3.30971 3.39275 3.87313 3.95252 4.30426 4.30743 4.65956 4.72230 4.96653 5.10208 5.10793 5.14524 5.22683 5.29117 5.39563 5.47810 5.51358 5.65605 5.70946 5.82892 5.86059 5.94982 6.06034 6.16947 6.19884 6.30745 6.62296 6.67049 6.74654 6.76474 7.03308 7.14905 7.17338 7.34937 7.87169 8.07789 8.46110 8.70820 8.86666 9.35352 10.87262 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021682 B = 0.004967 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.067428 B = 5635.313071 C = 6237.490309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C 0.195 3.805 4 O -0.558 6.558 5 C -0.175 4.175 6 C 0.502 3.498 7 O -0.553 6.553 8 N -0.703 5.703 9 C 0.221 3.779 10 C -0.545 4.545 11 H 0.079 0.921 12 C 0.078 3.922 13 N -0.892 5.892 14 Si 0.876 3.124 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.261 1.261 18 C -0.081 4.081 19 C -0.097 4.097 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.118 4.118 23 C -0.112 4.112 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.390 0.610 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.396 0.604 33 H 0.025 0.975 34 H 0.020 0.980 35 H 0.268 0.732 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.825 -10.658 -2.281 20.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C 0.153 3.847 4 O -0.369 6.369 5 C -0.216 4.216 6 C 0.288 3.712 7 O -0.433 6.433 8 N -0.351 5.351 9 C 0.099 3.901 10 C -0.582 4.582 11 H 0.097 0.903 12 C -0.126 4.126 13 N -0.529 5.529 14 Si 0.703 3.297 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.185 1.185 18 C -0.082 4.082 19 C -0.115 4.115 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.136 4.136 23 C -0.130 4.130 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.243 0.757 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.230 0.770 33 H 0.043 0.957 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.141 0.859 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.446 -10.414 -2.176 20.434 hybrid contribution 0.547 1.217 -0.218 1.352 sum -16.900 -9.198 -2.394 19.389 Atomic orbital electron populations 1.21743 0.95025 1.01106 1.02795 1.21492 0.97266 0.92984 1.02494 1.19626 0.89522 0.91998 0.83562 1.86338 1.76049 1.30810 1.43654 1.22557 0.97522 0.96418 1.05073 1.20410 0.83232 0.90579 0.77024 1.90578 1.55232 1.45874 1.51657 1.46193 1.06004 1.11227 1.71649 1.19482 0.95222 0.78752 0.96639 1.21089 0.88846 0.95335 1.52972 0.90284 1.24792 0.94766 0.99155 0.93839 1.69880 1.06345 1.27657 1.49034 0.86822 0.80656 0.83339 0.78902 1.19837 1.20878 1.18550 1.20222 0.94876 0.98021 0.95045 1.20864 0.95873 0.96813 0.97977 1.21070 0.99844 0.99889 0.93416 1.21062 0.95310 0.99839 0.98187 1.21052 0.96378 0.98035 0.98161 1.20986 0.99020 1.00072 0.92969 0.91782 0.92369 0.93140 0.90767 0.90913 0.75706 0.87980 0.88381 0.77006 0.95726 0.96195 0.92236 0.85891 0.86558 0.86630 0.86420 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.20 37.16 0.34 -1.19 16 2 C -0.10 -1.10 5.19 -26.74 -0.14 -1.24 16 3 C 0.19 2.53 0.66 -91.78 -0.06 2.47 16 4 O -0.56 -8.08 11.23 -52.47 -0.59 -8.67 16 5 C -0.18 -2.28 4.44 -27.88 -0.12 -2.40 16 6 C 0.50 8.90 6.57 -10.98 -0.07 8.83 16 7 O -0.55 -11.38 12.77 -11.68 -0.15 -11.53 16 8 N -0.70 -13.67 5.55 -61.47 -0.34 -14.02 16 9 C 0.22 5.34 4.50 -5.19 -0.02 5.32 16 10 C -0.54 -14.78 9.83 -34.44 -0.34 -15.12 16 11 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 12 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 13 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 14 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 18 C -0.08 -1.14 2.64 -104.62 -0.28 -1.42 16 19 C -0.10 -1.34 7.54 -39.59 -0.30 -1.64 16 20 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 21 C -0.13 -1.63 10.05 -39.59 -0.40 -2.03 16 22 C -0.12 -1.62 10.05 -39.59 -0.40 -2.02 16 23 C -0.11 -1.60 8.31 -39.58 -0.33 -1.93 16 24 H 0.06 0.71 7.65 -51.93 -0.40 0.31 16 25 H 0.06 0.63 6.19 -51.93 -0.32 0.31 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.39 6.15 6.69 45.56 0.30 6.45 16 30 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.10 1.06 6.74 -51.93 -0.35 0.71 16 32 H 0.40 6.81 8.32 -40.82 -0.34 6.47 16 33 H 0.02 0.64 7.20 -51.93 -0.37 0.26 16 34 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.12 1.61 7.45 -52.48 -0.39 1.22 16 37 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 40 H 0.12 1.53 6.21 -52.49 -0.33 1.20 16 LS Contribution 323.14 15.07 4.87 4.87 Total: -1.00 -31.33 323.14 -7.84 -39.17 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -5.13 Total: 11.31 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -2.61 Total: -12.29 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.43 Total: -39.60 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.74 Total: -20.21 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.33 -7.84 -39.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840436131.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.027 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds