Wall clock time and date at job start Mon Mar 30 2020 01:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47693 * 2 1 4 4 O 1.42896 * 109.47282 * 58.80080 * 3 2 1 5 5 C 1.52995 * 109.47382 * 178.80815 * 3 2 1 6 6 C 1.50701 * 109.47156 * 176.13029 * 5 3 2 7 7 O 1.21278 * 120.00135 * 5.43833 * 6 5 3 8 8 N 1.34778 * 120.00022 * 185.43416 * 6 5 3 9 9 C 1.46501 * 120.00062 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.46944 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00187 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99621 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99991 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00214 * 359.97438 * 12 10 9 15 15 H 1.48509 * 109.47143 * 90.00167 * 14 12 10 16 16 H 1.48495 * 109.47314 * 209.99866 * 14 12 10 17 17 H 1.48497 * 109.47168 * 330.00323 * 14 12 10 18 18 C 1.50700 * 109.46772 * 298.80546 * 3 2 1 19 19 C 1.38234 * 120.00229 * 89.99976 * 18 3 2 20 20 C 1.38232 * 120.00291 * 180.02562 * 19 18 3 21 21 C 1.38235 * 119.99997 * 359.95691 * 20 19 18 22 22 C 1.38230 * 119.99686 * 0.27808 * 21 20 19 23 23 C 1.38232 * 120.00486 * 359.53018 * 22 21 20 24 24 H 1.08999 * 109.47232 * 300.00629 * 1 2 3 25 25 H 1.09001 * 109.46966 * 59.99922 * 1 2 3 26 26 H 1.09002 * 109.47667 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47232 * 239.99371 * 2 1 3 28 28 H 1.09001 * 109.46966 * 120.00078 * 2 1 3 29 29 H 0.96703 * 114.00275 * 180.02562 * 4 3 2 30 30 H 1.09006 * 109.46932 * 296.13025 * 5 3 2 31 31 H 1.09001 * 109.47206 * 56.13027 * 5 3 2 32 32 H 0.96998 * 120.00021 * 0.02562 * 8 6 5 33 33 H 1.09006 * 109.46878 * 299.99763 * 9 8 6 34 34 H 1.08997 * 109.47124 * 60.00092 * 9 8 6 35 35 H 0.96994 * 119.99915 * 180.02562 * 13 12 10 36 36 H 1.08004 * 119.99995 * 359.97438 * 19 18 3 37 37 H 1.08007 * 119.99948 * 179.97438 * 20 19 18 38 38 H 1.08000 * 119.99995 * 180.02562 * 21 20 19 39 39 H 1.08010 * 119.99515 * 179.72790 * 22 21 20 40 40 H 1.08002 * 120.00338 * 180.21068 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 1.5410 2.1242 1.1524 5 6 3.5697 1.4424 0.0300 6 6 4.0740 2.8593 -0.0658 7 8 3.2900 3.7844 -0.0504 8 7 5.3964 3.0984 -0.1686 9 6 5.8867 4.4759 -0.2612 10 6 7.3900 4.4679 -0.3669 11 1 7.9265 3.5306 -0.3648 12 6 8.0803 5.6573 -0.4662 13 7 9.3923 5.6504 -0.5579 14 14 7.1523 7.2784 -0.4705 15 1 7.0042 7.7677 0.9238 16 1 7.9062 8.2783 -1.2685 17 1 5.8086 7.0779 -1.0701 18 6 1.5621 2.1442 -1.2450 19 6 0.3539 2.8158 -1.2393 20 6 -0.0848 3.4591 -2.3815 21 6 0.6851 3.4315 -3.5292 22 6 1.8910 2.7558 -3.5364 23 6 2.3316 2.1158 -2.3931 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.8248 3.0463 1.2175 30 1 3.9148 0.9962 0.9628 31 1 3.9497 0.8638 -0.8120 32 1 6.0236 2.3585 -0.1813 33 1 5.4633 4.9536 -1.1448 34 1 5.5876 5.0286 0.6293 35 1 9.8780 6.4871 -0.6274 36 1 -0.2477 2.8373 -0.3426 37 1 -1.0290 3.9835 -2.3770 38 1 0.3426 3.9344 -4.4215 39 1 2.4905 2.7305 -4.4345 40 1 3.2754 1.5908 -2.3977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840436131.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:15 Heat of formation + Delta-G solvation = -93.996812 kcal Electronic energy + Delta-G solvation = -22038.039699 eV Core-core repulsion = 18816.345349 eV Total energy + Delta-G solvation = -3221.694349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.64594 -39.80046 -38.00790 -36.09263 -34.49532 -34.18879 -32.36407 -31.41932 -30.98889 -29.41949 -25.89427 -23.92797 -23.58115 -23.19577 -21.54360 -20.88648 -19.12870 -18.66812 -17.69115 -17.47628 -16.82970 -16.47176 -16.13510 -15.79126 -15.60637 -15.41349 -14.87487 -14.67219 -14.64033 -14.35069 -14.12746 -13.97045 -13.44210 -13.30233 -13.07868 -12.79759 -12.63901 -12.55319 -12.46499 -12.02603 -11.95929 -11.82649 -11.66861 -11.50026 -10.95907 -10.93083 -10.76346 -9.91994 -9.73433 -9.49298 -8.41363 -6.47970 0.51762 0.56723 1.30466 1.33226 1.45089 1.74727 2.26064 2.45654 2.92932 2.94396 3.29219 3.66406 3.69997 3.84537 4.12191 4.17054 4.27950 4.36573 4.44075 4.54731 4.60225 4.65413 4.72674 4.79699 4.87617 5.03270 5.06281 5.08815 5.15266 5.18882 5.25938 5.30813 5.48835 5.52240 5.61255 5.66088 5.72194 6.07338 6.17962 6.53360 6.70587 6.84247 7.15156 7.42897 8.73482 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021682 B = 0.004967 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.067428 B = 5635.313071 C = 6237.490309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C 0.190 3.810 4 O -0.563 6.563 5 C -0.166 4.166 6 C 0.503 3.497 7 O -0.581 6.581 8 N -0.706 5.706 9 C 0.235 3.765 10 C -0.546 4.546 11 H 0.059 0.941 12 C 0.028 3.972 13 N -0.931 5.931 14 Si 0.936 3.064 15 H -0.265 1.265 16 H -0.274 1.274 17 H -0.262 1.262 18 C -0.089 4.089 19 C -0.112 4.112 20 C -0.131 4.131 21 C -0.135 4.135 22 C -0.133 4.133 23 C -0.131 4.131 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.382 0.618 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.408 0.592 33 H 0.009 0.991 34 H 0.010 0.990 35 H 0.272 0.728 36 H 0.123 0.877 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.039 -11.402 -2.473 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 C 0.149 3.851 4 O -0.373 6.373 5 C -0.205 4.205 6 C 0.291 3.709 7 O -0.462 6.462 8 N -0.355 5.355 9 C 0.111 3.889 10 C -0.584 4.584 11 H 0.077 0.923 12 C -0.173 4.173 13 N -0.570 5.570 14 Si 0.760 3.240 15 H -0.190 1.190 16 H -0.199 1.199 17 H -0.187 1.187 18 C -0.089 4.089 19 C -0.130 4.130 20 C -0.149 4.149 21 C -0.153 4.153 22 C -0.151 4.151 23 C -0.149 4.149 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.234 0.766 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.243 0.757 33 H 0.027 0.973 34 H 0.028 0.972 35 H 0.081 0.919 36 H 0.141 0.859 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.673 -11.200 -2.366 21.903 hybrid contribution 0.897 1.390 -0.172 1.663 sum -17.777 -9.810 -2.538 20.462 Atomic orbital electron populations 1.21707 0.94957 1.01957 1.01768 1.21548 0.97328 0.91272 1.03875 1.19860 0.89391 0.93146 0.82692 1.86346 1.76280 1.30234 1.44423 1.22594 0.97509 0.93114 1.07321 1.21186 0.82019 0.92366 0.75359 1.90571 1.55744 1.47469 1.52451 1.46043 1.07211 1.09668 1.72580 1.19026 0.93165 0.81342 0.95328 1.21312 0.90393 0.94633 1.52042 0.92254 1.25576 0.95461 1.02574 0.93654 1.69981 1.07799 1.28781 1.50451 0.85879 0.79261 0.79574 0.79278 1.19034 1.19898 1.18672 1.20381 0.94973 0.98158 0.95426 1.21018 0.96186 0.97328 0.98422 1.21389 1.00708 0.99634 0.93191 1.21379 0.95120 0.99721 0.99050 1.21355 0.96980 0.98112 0.98668 1.21194 0.99547 1.00806 0.93372 0.92977 0.93223 0.91334 0.89093 0.89746 0.76631 0.85863 0.85662 0.75693 0.97279 0.97216 0.91875 0.85861 0.84543 0.84515 0.85174 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.20 71.98 0.66 -2.06 16 2 C -0.10 -1.89 5.19 30.59 0.16 -1.73 16 3 C 0.19 4.59 0.66 -11.54 -0.01 4.58 16 4 O -0.56 -15.71 11.23 -132.49 -1.49 -17.19 16 5 C -0.17 -3.90 4.44 29.85 0.13 -3.76 16 6 C 0.50 17.16 6.57 87.66 0.58 17.74 16 7 O -0.58 -23.54 12.77 13.46 0.17 -23.37 16 8 N -0.71 -26.82 5.55 -466.78 -2.59 -29.41 16 9 C 0.24 11.31 4.50 85.63 0.38 11.69 16 10 C -0.55 -29.79 9.83 25.60 0.25 -29.54 16 11 H 0.06 3.40 7.84 -2.91 -0.02 3.37 16 12 C 0.03 1.56 5.47 84.65 0.46 2.02 16 13 N -0.93 -55.39 13.96 21.45 0.30 -55.09 16 14 Si 0.94 44.06 27.47 68.60 1.88 45.95 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 17 H -0.26 -12.31 6.54 99.48 0.65 -11.66 16 18 C -0.09 -2.39 2.64 -19.86 -0.05 -2.44 16 19 C -0.11 -2.99 7.54 22.27 0.17 -2.82 16 20 C -0.13 -3.25 10.05 22.27 0.22 -3.03 16 21 C -0.13 -3.31 10.05 22.27 0.22 -3.08 16 22 C -0.13 -3.49 10.05 22.27 0.22 -3.26 16 23 C -0.13 -3.56 8.31 22.27 0.18 -3.38 16 24 H 0.05 1.08 7.65 -2.39 -0.02 1.06 16 25 H 0.05 1.00 6.19 -2.39 -0.01 0.99 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.38 11.92 6.69 -74.06 -0.50 11.43 16 30 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 31 H 0.13 2.30 6.74 -2.39 -0.02 2.28 16 32 H 0.41 13.55 8.32 -92.71 -0.77 12.78 16 33 H 0.01 0.48 7.20 -2.38 -0.02 0.46 16 34 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 35 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.12 3.19 7.45 -2.91 -0.02 3.17 16 37 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 38 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 39 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 40 H 0.12 3.03 6.21 -2.91 -0.02 3.01 16 Total: -1.00 -66.84 323.14 1.60 -65.24 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: -0.27 Total: 32.94 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 3.59 Total: -19.07 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -2.29 Total: -84.50 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -1.32 Total: -40.56 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.95 kcal Total: -66.84 1.60 -65.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840436131.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.758 kcal (2) G-P(sol) polarization free energy of solvation -66.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds