Wall clock time and date at job start Mon Mar 30 2020 01:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35711 * 117.00124 * 2 1 4 4 C 1.38544 * 120.11873 * 0.02562 * 3 2 1 5 5 C 1.38245 * 120.23113 * 179.97438 * 4 3 2 6 6 C 1.38280 * 120.47417 * 0.04630 * 5 4 3 7 7 C 1.38498 * 120.23391 * 359.95307 * 6 5 4 8 8 O 1.35713 * 120.11723 * 180.29827 * 7 6 5 9 9 C 1.40210 * 120.11825 * 179.97438 * 3 2 1 10 10 C 1.47153 * 120.23453 * 0.02562 * 9 3 2 11 11 N 1.29538 * 120.00043 * 180.02562 * 10 9 3 12 12 C 1.46503 * 119.99819 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46694 * 115.00121 * 12 11 10 14 14 C 1.52993 * 109.47420 * 299.99996 * 13 12 11 15 15 C 1.53002 * 109.46935 * 60.00155 * 13 12 11 16 16 C 1.50701 * 109.46708 * 179.97438 * 13 12 11 17 17 H 1.07992 * 120.00092 * 0.02562 * 16 13 12 18 18 C 1.37884 * 119.99737 * 180.02562 * 16 13 12 19 19 N 1.31515 * 119.99887 * 0.02562 * 18 16 13 20 20 Si 1.86794 * 119.99878 * 180.02562 * 18 16 13 21 21 H 1.48506 * 109.47192 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47373 * 120.00212 * 20 18 16 23 23 H 1.48507 * 109.47159 * 240.00247 * 20 18 16 24 24 H 1.09002 * 109.47417 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47411 * 299.99940 * 1 2 3 26 26 H 1.09007 * 109.46747 * 59.99760 * 1 2 3 27 27 H 1.08003 * 119.88785 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.76049 * 180.02562 * 5 4 3 29 29 H 1.07999 * 119.87931 * 179.97438 * 6 5 4 30 30 H 0.96706 * 113.99898 * 269.72086 * 8 7 6 31 31 H 1.07999 * 119.99365 * 0.02562 * 10 9 3 32 32 H 1.08995 * 109.47109 * 235.00416 * 12 11 10 33 33 H 1.08999 * 109.46995 * 355.00194 * 12 11 10 34 34 H 1.09003 * 109.47186 * 60.00356 * 14 13 12 35 35 H 1.08999 * 109.46915 * 179.97438 * 14 13 12 36 36 H 1.08999 * 109.47099 * 300.00435 * 14 13 12 37 37 H 1.09000 * 109.47111 * 60.00015 * 15 13 12 38 38 H 1.08998 * 109.46865 * 179.97438 * 15 13 12 39 39 H 1.08994 * 109.47563 * 300.00029 * 15 13 12 40 40 H 0.97003 * 119.99795 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2930 2.3727 0.0005 5 6 1.9182 3.6057 0.0011 6 6 3.2983 3.6921 0.0001 7 6 4.0692 2.5415 -0.0004 8 8 5.4234 2.6291 0.0048 9 6 3.4451 1.2854 0.0005 10 6 4.2542 0.0562 0.0005 11 7 5.5473 0.1319 0.0015 12 6 6.3527 -1.0918 0.0021 13 6 7.1433 -1.1826 -1.3046 14 6 6.1728 -1.2113 -2.4870 15 6 8.0634 0.0335 -1.4295 16 6 7.9723 -2.4411 -1.3038 17 1 7.9382 -3.1095 -0.4563 18 6 8.7741 -2.7391 -2.3852 19 7 8.8159 -1.9248 -3.4170 20 14 9.8011 -4.2994 -2.3845 21 1 9.5779 -5.0384 -1.1158 22 1 9.4039 -5.1540 -3.5321 23 1 11.2385 -3.9461 -2.5045 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2144 2.3163 0.0005 28 1 1.3245 4.5078 0.0019 29 1 3.7767 4.6604 0.0001 30 1 5.8194 2.6528 -0.8772 31 1 3.7697 -0.9090 -0.0003 32 1 7.0441 -1.0714 0.8445 33 1 5.6972 -1.9581 0.0911 34 1 5.5736 -0.3007 -2.4874 35 1 6.7361 -1.2755 -3.4179 36 1 5.5173 -2.0776 -2.3980 37 1 8.7549 0.0539 -0.5871 38 1 8.6270 -0.0314 -2.3602 39 1 7.4643 0.9440 -1.4298 40 1 9.3803 -2.1343 -4.1776 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840709750.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:02 Heat of formation + Delta-G solvation = -32.227770 kcal Electronic energy + Delta-G solvation = -21617.747689 eV Core-core repulsion = 18398.731847 eV Total energy + Delta-G solvation = -3219.015843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.28386 -38.32997 -36.76415 -35.72245 -34.20660 -31.54312 -30.21095 -29.26683 -27.41983 -25.80415 -25.44554 -25.03513 -22.87148 -22.01690 -20.03427 -18.53553 -18.23075 -16.82390 -16.50339 -15.96431 -15.83330 -15.55266 -14.74386 -14.60768 -14.29957 -13.89348 -13.77962 -13.24739 -12.79203 -12.49396 -12.27343 -12.13495 -11.91756 -11.45719 -11.32919 -11.12142 -11.05592 -10.83453 -10.59575 -10.45622 -10.33825 -10.09768 -10.08003 -9.39574 -9.19774 -8.80857 -8.34456 -8.33958 -8.25558 -7.86307 -5.92592 -4.03227 1.02139 1.36690 2.97244 3.13278 3.30435 3.38627 3.42645 3.87113 4.41814 4.48243 4.66917 4.78758 4.96058 4.99986 5.06832 5.20493 5.33056 5.34138 5.51218 5.57106 5.93219 6.04990 6.24323 6.33814 6.44654 6.54494 6.56858 6.67478 6.76098 6.91550 7.12886 7.17491 7.32357 7.35343 7.50637 7.73647 7.79131 8.05109 8.15924 8.28840 8.48267 8.59890 8.97851 9.61747 11.08018 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027029 B = 0.004244 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.676868 B = 6596.554719 C = 7229.982208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.159 3.841 4 C -0.229 4.229 5 C -0.061 4.061 6 C -0.193 4.193 7 C 0.185 3.815 8 O -0.468 6.468 9 C -0.110 4.110 10 C 0.143 3.857 11 N -0.460 5.460 12 C 0.045 3.955 13 C 0.077 3.923 14 C -0.129 4.129 15 C -0.119 4.119 16 C -0.507 4.507 17 H 0.054 0.946 18 C 0.066 3.934 19 N -0.885 5.885 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.100 0.900 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.129 0.871 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.396 0.604 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.027 0.973 34 H 0.008 0.992 35 H 0.083 0.917 36 H 0.018 0.982 37 H 0.020 0.980 38 H 0.076 0.924 39 H 0.018 0.982 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.473 9.274 4.721 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.111 3.889 4 C -0.248 4.248 5 C -0.081 4.081 6 C -0.212 4.212 7 C 0.137 3.863 8 O -0.279 6.279 9 C -0.112 4.112 10 C -0.068 4.068 11 N -0.168 5.168 12 C -0.083 4.083 13 C 0.076 3.924 14 C -0.187 4.187 15 C -0.176 4.176 16 C -0.546 4.546 17 H 0.072 0.928 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.719 3.281 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.118 0.882 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.255 0.745 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.027 0.973 35 H 0.101 0.899 36 H 0.037 0.963 37 H 0.040 0.960 38 H 0.095 0.905 39 H 0.037 0.963 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.493 9.572 5.148 18.925 hybrid contribution -0.110 -1.606 -0.510 1.689 sum -15.603 7.965 4.638 18.122 Atomic orbital electron populations 1.23079 0.78401 1.04017 1.01271 1.86069 1.21252 1.26724 1.88107 1.18884 0.90833 0.84357 0.94800 1.21056 0.99870 0.92079 1.11759 1.20768 0.94007 0.96887 0.96398 1.21316 0.93906 0.98385 1.07583 1.18348 0.84225 0.89920 0.93851 1.84740 1.14301 1.95363 1.33460 1.18707 0.89456 0.93751 1.09277 1.23544 0.91561 0.94286 0.97380 1.71856 1.06442 1.33185 1.05325 1.22762 0.96154 0.87629 1.01785 1.18091 0.91636 0.94949 0.87709 1.21803 0.97719 0.95952 1.03218 1.21653 0.98709 0.95540 1.01745 1.21138 1.24754 1.05861 1.02846 0.92803 1.24884 0.96606 0.96570 0.95483 1.69847 1.39494 1.36227 1.06771 0.86564 0.80144 0.83533 0.77896 1.19892 1.21127 1.21050 0.88197 0.92652 0.92579 0.85357 0.85629 0.85305 0.74540 0.88830 0.90681 0.95413 0.97259 0.89851 0.96263 0.96044 0.90536 0.96335 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.00 9.68 -18.84 -0.18 -4.18 16 3 C 0.16 2.18 6.70 -38.73 -0.26 1.92 16 4 C -0.23 -2.49 9.03 -39.47 -0.36 -2.85 16 5 C -0.06 -0.64 10.02 -39.56 -0.40 -1.03 16 6 C -0.19 -2.35 9.97 -39.47 -0.39 -2.74 16 7 C 0.18 2.80 6.71 -38.73 -0.26 2.54 16 8 O -0.47 -7.57 11.38 -18.84 -0.21 -7.79 16 9 C -0.11 -1.77 5.89 -104.78 -0.62 -2.39 16 10 C 0.14 2.64 10.00 -14.90 -0.15 2.49 16 11 N -0.46 -9.44 6.86 -59.14 -0.41 -9.85 16 12 C 0.05 1.03 5.22 -4.04 -0.02 1.01 16 13 C 0.08 1.93 0.57 -155.66 -0.09 1.84 16 14 C -0.13 -3.22 8.09 37.15 0.30 -2.92 16 15 C -0.12 -2.95 8.09 37.16 0.30 -2.65 16 16 C -0.51 -13.94 8.01 -34.44 -0.28 -14.22 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 19 N -0.88 -24.73 9.35 55.43 0.52 -24.21 16 20 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 26 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 27 H 0.13 1.03 6.28 -52.48 -0.33 0.70 16 28 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.40 5.57 9.06 45.56 0.41 5.98 16 31 H 0.09 1.72 7.34 -52.49 -0.39 1.33 16 32 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.03 0.62 7.69 -51.93 -0.40 0.22 16 34 H 0.01 0.20 7.45 -51.93 -0.39 -0.19 16 35 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 2.06 6.07 -51.93 -0.31 1.75 16 39 H 0.02 0.41 7.60 -51.93 -0.39 0.01 16 40 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 329.01 15.07 4.96 4.96 Total: -1.00 -30.73 329.01 -6.65 -37.38 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -4.99 Total: 3.47 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -1.32 Total: -16.08 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.11 Total: -34.06 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.40 Total: -11.97 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.73 -6.65 -37.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840709750.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.154 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds