Wall clock time and date at job start Mon Mar 30 2020 01:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35711 * 117.00124 * 2 1 4 4 C 1.38544 * 120.11873 * 0.02562 * 3 2 1 5 5 C 1.38245 * 120.23113 * 179.97438 * 4 3 2 6 6 C 1.38280 * 120.47417 * 0.04630 * 5 4 3 7 7 C 1.38498 * 120.23391 * 359.95307 * 6 5 4 8 8 O 1.35713 * 120.11723 * 180.29827 * 7 6 5 9 9 C 1.40210 * 120.11825 * 179.97438 * 3 2 1 10 10 C 1.47153 * 120.23453 * 0.02562 * 9 3 2 11 11 N 1.29538 * 120.00043 * 180.02562 * 10 9 3 12 12 C 1.46503 * 119.99819 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46694 * 115.00121 * 12 11 10 14 14 C 1.52993 * 109.47420 * 299.99996 * 13 12 11 15 15 C 1.53002 * 109.46935 * 60.00155 * 13 12 11 16 16 C 1.50701 * 109.46708 * 179.97438 * 13 12 11 17 17 H 1.07992 * 120.00092 * 0.02562 * 16 13 12 18 18 C 1.37884 * 119.99737 * 180.02562 * 16 13 12 19 19 N 1.31515 * 119.99887 * 0.02562 * 18 16 13 20 20 Si 1.86794 * 119.99878 * 180.02562 * 18 16 13 21 21 H 1.48506 * 109.47192 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47373 * 120.00212 * 20 18 16 23 23 H 1.48507 * 109.47159 * 240.00247 * 20 18 16 24 24 H 1.09002 * 109.47417 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47411 * 299.99940 * 1 2 3 26 26 H 1.09007 * 109.46747 * 59.99760 * 1 2 3 27 27 H 1.08003 * 119.88785 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.76049 * 180.02562 * 5 4 3 29 29 H 1.07999 * 119.87931 * 179.97438 * 6 5 4 30 30 H 0.96706 * 113.99898 * 269.72086 * 8 7 6 31 31 H 1.07999 * 119.99365 * 0.02562 * 10 9 3 32 32 H 1.08995 * 109.47109 * 235.00416 * 12 11 10 33 33 H 1.08999 * 109.46995 * 355.00194 * 12 11 10 34 34 H 1.09003 * 109.47186 * 60.00356 * 14 13 12 35 35 H 1.08999 * 109.46915 * 179.97438 * 14 13 12 36 36 H 1.08999 * 109.47099 * 300.00435 * 14 13 12 37 37 H 1.09000 * 109.47111 * 60.00015 * 15 13 12 38 38 H 1.08998 * 109.46865 * 179.97438 * 15 13 12 39 39 H 1.08994 * 109.47563 * 300.00029 * 15 13 12 40 40 H 0.97003 * 119.99795 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2930 2.3727 0.0005 5 6 1.9182 3.6057 0.0011 6 6 3.2983 3.6921 0.0001 7 6 4.0692 2.5415 -0.0004 8 8 5.4234 2.6291 0.0048 9 6 3.4451 1.2854 0.0005 10 6 4.2542 0.0562 0.0005 11 7 5.5473 0.1319 0.0015 12 6 6.3527 -1.0918 0.0021 13 6 7.1433 -1.1826 -1.3046 14 6 6.1728 -1.2113 -2.4870 15 6 8.0634 0.0335 -1.4295 16 6 7.9723 -2.4411 -1.3038 17 1 7.9382 -3.1095 -0.4563 18 6 8.7741 -2.7391 -2.3852 19 7 8.8159 -1.9248 -3.4170 20 14 9.8011 -4.2994 -2.3845 21 1 9.5779 -5.0384 -1.1158 22 1 9.4039 -5.1540 -3.5321 23 1 11.2385 -3.9461 -2.5045 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2144 2.3163 0.0005 28 1 1.3245 4.5078 0.0019 29 1 3.7767 4.6604 0.0001 30 1 5.8194 2.6528 -0.8772 31 1 3.7697 -0.9090 -0.0003 32 1 7.0441 -1.0714 0.8445 33 1 5.6972 -1.9581 0.0911 34 1 5.5736 -0.3007 -2.4874 35 1 6.7361 -1.2755 -3.4179 36 1 5.5173 -2.0776 -2.3980 37 1 8.7549 0.0539 -0.5871 38 1 8.6270 -0.0314 -2.3602 39 1 7.4643 0.9440 -1.4298 40 1 9.3803 -2.1343 -4.1776 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840709750.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:01 Heat of formation + Delta-G solvation = -52.258377 kcal Electronic energy + Delta-G solvation = -21618.616282 eV Core-core repulsion = 18398.731847 eV Total energy + Delta-G solvation = -3219.884435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25315 -39.37236 -38.52703 -36.74212 -35.89795 -33.32151 -31.56010 -30.23928 -28.20857 -27.62439 -27.37972 -26.94588 -24.15142 -22.97578 -21.44885 -20.19561 -19.37644 -17.98981 -17.89479 -17.49445 -16.78637 -16.68017 -16.62472 -15.77697 -15.50631 -15.20567 -15.15090 -14.85898 -14.19921 -14.13522 -13.57797 -13.34454 -13.18053 -13.06330 -12.82425 -12.70205 -12.54690 -12.30057 -12.15410 -12.10243 -11.98642 -11.83624 -11.54983 -11.31287 -10.97706 -10.74546 -10.39802 -9.91818 -9.38173 -9.01793 -8.01379 -6.19360 -0.05604 0.41393 1.39911 1.42423 1.52745 1.68501 2.30602 2.43905 2.81218 3.20457 3.29189 3.56818 3.87369 4.04180 4.23417 4.32944 4.43071 4.47541 4.48189 4.62651 4.62943 4.72722 4.78882 4.82533 4.91795 5.06668 5.14559 5.19270 5.31594 5.36057 5.45956 5.47085 5.56215 5.63491 5.68027 5.70609 6.11229 6.23182 6.43170 6.45329 6.85032 6.95144 7.06093 7.48283 8.97423 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027029 B = 0.004244 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.676868 B = 6596.554719 C = 7229.982208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.158 3.842 4 C -0.223 4.223 5 C -0.042 4.042 6 C -0.197 4.197 7 C 0.168 3.832 8 O -0.486 6.486 9 C -0.154 4.154 10 C 0.160 3.840 11 N -0.486 5.486 12 C 0.057 3.943 13 C 0.069 3.931 14 C -0.112 4.112 15 C -0.104 4.104 16 C -0.530 4.530 17 H 0.045 0.955 18 C 0.024 3.976 19 N -0.903 5.903 20 Si 0.950 3.050 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.113 0.887 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.164 0.836 28 H 0.168 0.832 29 H 0.147 0.853 30 H 0.399 0.601 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.060 0.940 36 H 0.012 0.988 37 H 0.012 0.988 38 H 0.053 0.947 39 H 0.034 0.966 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.968 10.575 4.988 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.110 3.890 4 C -0.241 4.241 5 C -0.061 4.061 6 C -0.216 4.216 7 C 0.120 3.880 8 O -0.298 6.298 9 C -0.156 4.156 10 C -0.049 4.049 11 N -0.194 5.194 12 C -0.072 4.072 13 C 0.068 3.932 14 C -0.170 4.170 15 C -0.162 4.162 16 C -0.569 4.569 17 H 0.064 0.936 18 C -0.176 4.176 19 N -0.542 5.542 20 Si 0.777 3.223 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.131 0.869 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.182 0.818 28 H 0.185 0.815 29 H 0.165 0.835 30 H 0.258 0.742 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.031 0.969 37 H 0.031 0.969 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.006 10.874 5.419 21.721 hybrid contribution 0.422 -1.925 -0.577 2.053 sum -17.584 8.949 4.842 20.316 Atomic orbital electron populations 1.23428 0.75805 1.05626 1.02882 1.86038 1.24005 1.26896 1.87904 1.19042 0.90168 0.85674 0.94111 1.21473 1.01514 0.91072 1.10047 1.21296 0.93435 0.98310 0.93066 1.21554 0.94783 0.98006 1.07219 1.18659 0.83913 0.90733 0.94705 1.84708 1.15515 1.95508 1.34045 1.18762 0.90655 0.92924 1.13240 1.23888 0.91151 0.95657 0.94235 1.71930 1.07142 1.31015 1.09354 1.22448 0.96093 0.88714 0.99977 1.18106 0.91830 0.94162 0.89108 1.21586 0.97262 0.96116 1.02012 1.21463 0.98382 0.96354 0.99959 1.21415 1.25748 1.06855 1.02869 0.93637 1.25562 0.97548 0.99305 0.95153 1.69967 1.39803 1.37402 1.07047 0.85628 0.78653 0.80177 0.77878 1.19695 1.20610 1.20604 0.86871 0.90824 0.90984 0.81844 0.81455 0.83510 0.74197 0.89358 0.91867 0.96143 0.96186 0.92116 0.96871 0.96901 0.92801 0.94743 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -8.15 9.68 -90.32 -0.87 -9.03 16 3 C 0.16 4.03 6.70 22.82 0.15 4.18 16 4 C -0.22 -3.94 9.03 22.34 0.20 -3.74 16 5 C -0.04 -0.69 10.02 22.28 0.22 -0.46 16 6 C -0.20 -4.26 9.97 22.34 0.22 -4.04 16 7 C 0.17 4.96 6.71 22.82 0.15 5.11 16 8 O -0.49 -15.93 11.38 -90.34 -1.03 -16.96 16 9 C -0.15 -4.89 5.89 -19.97 -0.12 -5.01 16 10 C 0.16 6.07 10.00 87.37 0.87 6.94 16 11 N -0.49 -20.53 6.86 -341.02 -2.34 -22.87 16 12 C 0.06 2.68 5.22 86.38 0.45 3.13 16 13 C 0.07 3.55 0.57 -52.93 -0.03 3.52 16 14 C -0.11 -5.73 8.09 71.98 0.58 -5.14 16 15 C -0.10 -5.31 8.09 71.98 0.58 -4.73 16 16 C -0.53 -29.89 8.01 25.60 0.21 -29.68 16 17 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 18 C 0.02 1.31 5.15 84.66 0.44 1.74 16 19 N -0.90 -51.39 9.35 21.45 0.20 -51.19 16 20 Si 0.95 44.23 29.54 68.60 2.03 46.25 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 26 H 0.07 0.70 7.66 -2.38 -0.02 0.68 16 27 H 0.16 1.71 6.28 -2.91 -0.02 1.69 16 28 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 29 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.40 11.57 9.06 -74.05 -0.67 10.90 16 31 H 0.09 3.35 7.34 -2.91 -0.02 3.33 16 32 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.02 0.95 7.69 -2.39 -0.02 0.93 16 34 H 0.02 0.93 7.45 -2.39 -0.02 0.91 16 35 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 36 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.05 2.98 6.07 -2.39 -0.01 2.96 16 39 H 0.03 1.59 7.60 -2.39 -0.02 1.57 16 40 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -67.84 329.01 3.41 -64.44 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.37 Total: 16.19 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 5.05 Total: -26.84 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -2.14 Total: -74.06 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -1.90 Total: -25.98 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -67.84 3.41 -64.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840709750.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.179 kcal (2) G-P(sol) polarization free energy of solvation -67.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds