Wall clock time and date at job start Mon Mar 30 2020 01:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35711 * 117.00292 * 2 1 4 4 C 1.38553 * 120.11776 * 0.02562 * 3 2 1 5 5 C 1.38236 * 120.23171 * 179.72643 * 4 3 2 6 6 C 1.38277 * 120.47758 * 0.51017 * 5 4 3 7 7 C 1.38509 * 120.23479 * 359.48897 * 6 5 4 8 8 O 1.35709 * 120.12620 * 180.27629 * 7 6 5 9 9 C 1.40214 * 120.12425 * 179.97438 * 3 2 1 10 10 C 1.47142 * 120.22981 * 0.04816 * 9 3 2 11 11 N 1.29541 * 120.00675 * 56.29694 * 10 9 3 12 12 C 1.46498 * 119.99457 * 7.61698 * 11 10 9 13 13 C 1.52999 * 109.47041 * 115.07493 * 12 11 10 14 14 C 1.53004 * 109.47303 * 304.48839 * 13 12 11 15 15 C 1.53003 * 109.47410 * 64.48808 * 13 12 11 16 16 C 1.50705 * 109.47401 * 184.48882 * 13 12 11 17 17 H 1.07995 * 119.99811 * 359.88444 * 16 13 12 18 18 C 1.37873 * 119.99982 * 179.88066 * 16 13 12 19 19 N 1.31516 * 120.00107 * 3.13267 * 18 16 13 20 20 Si 1.86803 * 119.99968 * 183.12935 * 18 16 13 21 21 H 1.48498 * 109.47122 * 94.99542 * 20 18 16 22 22 H 1.48499 * 109.47255 * 215.00072 * 20 18 16 23 23 H 1.48500 * 109.46797 * 334.99432 * 20 18 16 24 24 H 1.09010 * 109.47217 * 59.99937 * 1 2 3 25 25 H 1.09000 * 109.47566 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47390 * 300.00331 * 1 2 3 27 27 H 1.08005 * 119.88161 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.76311 * 180.25304 * 5 4 3 29 29 H 1.08005 * 119.88770 * 179.76518 * 6 5 4 30 30 H 0.96700 * 114.00133 * 84.99248 * 8 7 6 31 31 H 1.08002 * 120.00112 * 236.30306 * 10 9 3 32 32 H 1.09002 * 109.47554 * 235.06924 * 12 11 10 33 33 H 1.08995 * 109.47336 * 355.07477 * 12 11 10 34 34 H 1.09003 * 109.46740 * 64.85423 * 14 13 12 35 35 H 1.08998 * 109.47566 * 184.85434 * 14 13 12 36 36 H 1.09003 * 109.46584 * 304.85979 * 14 13 12 37 37 H 1.09002 * 109.47045 * 59.99684 * 15 13 12 38 38 H 1.08996 * 109.47190 * 179.97438 * 15 13 12 39 39 H 1.09004 * 109.46721 * 300.00357 * 15 13 12 40 40 H 0.97002 * 119.99929 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2929 2.3728 0.0005 5 6 1.9181 3.6056 0.0062 6 6 3.2982 3.6922 0.0009 7 6 4.0692 2.5416 0.0003 8 8 5.4234 2.6291 0.0007 9 6 3.4452 1.2855 0.0005 10 6 4.2541 0.0564 0.0000 11 7 4.0906 -0.8264 -0.9338 12 6 3.2251 -0.5303 -2.0781 13 6 4.0659 -0.4857 -3.3555 14 6 5.2009 0.5259 -3.1840 15 6 4.6548 -1.8715 -3.6272 16 6 3.1964 -0.0732 -4.5152 17 1 2.1484 0.1343 -4.3573 18 6 3.7388 0.0392 -5.7778 19 7 5.0001 -0.2728 -5.9818 20 14 2.6823 0.6346 -7.1986 21 1 2.8677 2.0974 -7.3743 22 1 3.0847 -0.0685 -8.4432 23 1 1.2546 0.3479 -6.9078 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2144 2.3163 0.0005 28 1 1.3244 4.5078 0.0108 29 1 3.7767 4.6605 0.0016 30 1 5.8108 2.7309 0.8809 31 1 4.9842 -0.1099 0.7784 32 1 2.4658 -1.3069 -2.1699 33 1 2.7413 0.4348 -1.9277 34 1 5.8783 0.1828 -2.4020 35 1 5.7476 0.6213 -4.1222 36 1 4.7853 1.4944 -2.9055 37 1 3.8462 -2.5923 -3.7494 38 1 5.2534 -1.8398 -4.5375 39 1 5.2837 -2.1698 -2.7884 40 1 5.3816 -0.1941 -6.8702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840709752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:05 Heat of formation + Delta-G solvation = -30.640299 kcal Electronic energy + Delta-G solvation = -22529.927565 eV Core-core repulsion = 19310.980560 eV Total energy + Delta-G solvation = -3218.947005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.39728 -38.32440 -36.76352 -35.83069 -34.23931 -31.21527 -29.86641 -29.28416 -27.31642 -25.80372 -25.33501 -24.97033 -23.02375 -22.01164 -20.01040 -18.80048 -17.87645 -16.77287 -16.48291 -15.95316 -15.73765 -15.55251 -14.74470 -14.62255 -14.24877 -13.97572 -13.85784 -13.23346 -12.61722 -12.22365 -12.18419 -12.12284 -11.86828 -11.40663 -11.25919 -11.04683 -10.92695 -10.76289 -10.64216 -10.56149 -10.17227 -10.04025 -9.76604 -9.27060 -8.91143 -8.77927 -8.37595 -8.27681 -8.19459 -7.94431 -5.85081 -3.95777 1.20051 1.44435 2.91490 3.25862 3.33630 3.40344 3.43121 3.71988 4.37643 4.48718 4.79296 4.96268 5.08217 5.19102 5.22552 5.29066 5.38635 5.39471 5.51303 5.55886 5.92733 6.18798 6.37009 6.40367 6.47640 6.60814 6.68834 6.80128 6.90352 7.06906 7.25138 7.37785 7.43627 7.46852 7.62723 7.78427 7.85334 7.85709 8.27722 8.39617 8.55534 8.66703 9.05165 9.68193 11.15143 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016349 B = 0.006370 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.229993 B = 4394.323514 C = 4537.453334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.165 3.835 4 C -0.222 4.222 5 C -0.063 4.063 6 C -0.189 4.189 7 C 0.167 3.833 8 O -0.483 6.483 9 C -0.150 4.150 10 C 0.156 3.844 11 N -0.466 5.466 12 C 0.051 3.949 13 C 0.078 3.922 14 C -0.122 4.122 15 C -0.124 4.124 16 C -0.503 4.503 17 H 0.050 0.950 18 C 0.065 3.935 19 N -0.883 5.883 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.057 0.943 25 H 0.099 0.901 26 H 0.053 0.947 27 H 0.129 0.871 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.388 0.612 31 H 0.146 0.854 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.016 0.984 37 H 0.017 0.983 38 H 0.080 0.920 39 H 0.017 0.983 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 6.309 15.500 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.216 6.216 3 C 0.117 3.883 4 C -0.241 4.241 5 C -0.081 4.081 6 C -0.208 4.208 7 C 0.120 3.880 8 O -0.293 6.293 9 C -0.154 4.154 10 C -0.057 4.057 11 N -0.170 5.170 12 C -0.077 4.077 13 C 0.077 3.923 14 C -0.179 4.179 15 C -0.182 4.182 16 C -0.542 4.542 17 H 0.068 0.932 18 C -0.136 4.136 19 N -0.522 5.522 20 Si 0.716 3.284 21 H -0.209 1.209 22 H -0.212 1.212 23 H -0.201 1.201 24 H 0.076 0.924 25 H 0.118 0.882 26 H 0.072 0.928 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.245 0.755 31 H 0.163 0.837 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.032 0.968 35 H 0.095 0.905 36 H 0.035 0.965 37 H 0.036 0.964 38 H 0.099 0.901 39 H 0.036 0.964 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.382 5.079 14.340 16.137 hybrid contribution -1.285 1.439 -0.393 1.969 sum -6.667 6.518 13.947 16.777 Atomic orbital electron populations 1.23064 0.78475 1.04028 1.01164 1.86151 1.21200 1.26384 1.87837 1.18800 0.90919 0.84527 0.94049 1.21117 1.00008 0.92201 1.10767 1.20745 0.94011 0.96911 0.96457 1.21245 0.94052 0.98192 1.07277 1.18171 0.83000 0.90364 0.96430 1.84864 1.15859 1.95306 1.33247 1.19608 0.91065 0.95858 1.08879 1.24132 0.96223 0.87604 0.97763 1.72028 1.15682 1.28120 1.01168 1.22690 0.95384 0.98733 0.90929 1.18086 0.92260 0.93261 0.88698 1.21689 0.98580 0.97032 1.00627 1.21733 0.99110 0.96445 1.00880 1.21080 0.95153 1.45601 0.92370 0.93191 1.24876 0.94976 0.95359 0.98349 1.69853 1.12317 1.48379 1.21662 0.86652 0.80700 0.78802 0.82249 1.20870 1.21234 1.20081 0.92429 0.88236 0.92846 0.85360 0.85603 0.85371 0.75548 0.83692 0.91638 0.94547 0.96794 0.90483 0.96513 0.96357 0.90133 0.96396 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.31 16 2 O -0.30 -4.87 8.37 -18.84 -0.16 -5.03 16 3 C 0.16 2.64 5.07 -38.72 -0.20 2.45 16 4 C -0.22 -3.00 9.03 -39.47 -0.36 -3.35 16 5 C -0.06 -0.78 10.02 -39.57 -0.40 -1.18 16 6 C -0.19 -2.51 9.97 -39.47 -0.39 -2.91 16 7 C 0.17 2.54 6.72 -38.72 -0.26 2.28 16 8 O -0.48 -6.74 12.95 -18.83 -0.24 -6.98 16 9 C -0.15 -2.54 4.58 -104.78 -0.48 -3.02 16 10 C 0.16 2.80 10.13 -14.91 -0.15 2.65 16 11 N -0.47 -9.99 9.08 -59.15 -0.54 -10.53 16 12 C 0.05 1.21 3.67 -4.04 -0.01 1.20 16 13 C 0.08 2.07 0.57 -155.65 -0.09 1.98 16 14 C -0.12 -3.25 7.97 37.16 0.30 -2.96 16 15 C -0.12 -3.31 8.13 37.16 0.30 -3.01 16 16 C -0.50 -14.40 8.01 -34.44 -0.28 -14.68 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 18 C 0.07 1.85 5.12 -17.82 -0.09 1.76 16 19 N -0.88 -25.69 9.35 55.43 0.52 -25.17 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H 0.06 0.64 7.66 -51.92 -0.40 0.24 16 25 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 27 H 0.13 1.40 6.28 -52.48 -0.33 1.07 16 28 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 29 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.39 3.01 9.06 45.56 0.41 3.42 16 31 H 0.15 2.10 8.06 -52.49 -0.42 1.67 16 32 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 33 H 0.04 0.87 4.79 -51.93 -0.25 0.62 16 34 H 0.01 0.34 7.66 -51.93 -0.40 -0.06 16 35 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 2.31 5.96 -51.93 -0.31 2.00 16 39 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 325.09 15.07 4.90 4.90 Total: -1.00 -33.93 325.09 -6.54 -40.47 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -4.89 Total: 2.92 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -1.11 Total: -17.47 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.02 Total: -35.70 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -0.40 Total: -12.01 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.93 -6.54 -40.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840709752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.832 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds