Wall clock time and date at job start Mon Mar 30 2020 01:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35711 * 117.00292 * 2 1 4 4 C 1.38553 * 120.11776 * 0.02562 * 3 2 1 5 5 C 1.38236 * 120.23171 * 179.72643 * 4 3 2 6 6 C 1.38277 * 120.47758 * 0.51017 * 5 4 3 7 7 C 1.38509 * 120.23479 * 359.48897 * 6 5 4 8 8 O 1.35709 * 120.12620 * 180.27629 * 7 6 5 9 9 C 1.40214 * 120.12425 * 179.97438 * 3 2 1 10 10 C 1.47142 * 120.22981 * 0.04816 * 9 3 2 11 11 N 1.29541 * 120.00675 * 56.29694 * 10 9 3 12 12 C 1.46498 * 119.99457 * 7.61698 * 11 10 9 13 13 C 1.52999 * 109.47041 * 115.07493 * 12 11 10 14 14 C 1.53004 * 109.47303 * 304.48839 * 13 12 11 15 15 C 1.53003 * 109.47410 * 64.48808 * 13 12 11 16 16 C 1.50705 * 109.47401 * 184.48882 * 13 12 11 17 17 H 1.07995 * 119.99811 * 359.88444 * 16 13 12 18 18 C 1.37873 * 119.99982 * 179.88066 * 16 13 12 19 19 N 1.31516 * 120.00107 * 3.13267 * 18 16 13 20 20 Si 1.86803 * 119.99968 * 183.12935 * 18 16 13 21 21 H 1.48498 * 109.47122 * 94.99542 * 20 18 16 22 22 H 1.48499 * 109.47255 * 215.00072 * 20 18 16 23 23 H 1.48500 * 109.46797 * 334.99432 * 20 18 16 24 24 H 1.09010 * 109.47217 * 59.99937 * 1 2 3 25 25 H 1.09000 * 109.47566 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47390 * 300.00331 * 1 2 3 27 27 H 1.08005 * 119.88161 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.76311 * 180.25304 * 5 4 3 29 29 H 1.08005 * 119.88770 * 179.76518 * 6 5 4 30 30 H 0.96700 * 114.00133 * 84.99248 * 8 7 6 31 31 H 1.08002 * 120.00112 * 236.30306 * 10 9 3 32 32 H 1.09002 * 109.47554 * 235.06924 * 12 11 10 33 33 H 1.08995 * 109.47336 * 355.07477 * 12 11 10 34 34 H 1.09003 * 109.46740 * 64.85423 * 14 13 12 35 35 H 1.08998 * 109.47566 * 184.85434 * 14 13 12 36 36 H 1.09003 * 109.46584 * 304.85979 * 14 13 12 37 37 H 1.09002 * 109.47045 * 59.99684 * 15 13 12 38 38 H 1.08996 * 109.47190 * 179.97438 * 15 13 12 39 39 H 1.09004 * 109.46721 * 300.00357 * 15 13 12 40 40 H 0.97002 * 119.99929 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2929 2.3728 0.0005 5 6 1.9181 3.6056 0.0062 6 6 3.2982 3.6922 0.0009 7 6 4.0692 2.5416 0.0003 8 8 5.4234 2.6291 0.0007 9 6 3.4452 1.2855 0.0005 10 6 4.2541 0.0564 0.0000 11 7 4.0906 -0.8264 -0.9338 12 6 3.2251 -0.5303 -2.0781 13 6 4.0659 -0.4857 -3.3555 14 6 5.2009 0.5259 -3.1840 15 6 4.6548 -1.8715 -3.6272 16 6 3.1964 -0.0732 -4.5152 17 1 2.1484 0.1343 -4.3573 18 6 3.7388 0.0392 -5.7778 19 7 5.0001 -0.2728 -5.9818 20 14 2.6823 0.6346 -7.1986 21 1 2.8677 2.0974 -7.3743 22 1 3.0847 -0.0685 -8.4432 23 1 1.2546 0.3479 -6.9078 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2144 2.3163 0.0005 28 1 1.3244 4.5078 0.0108 29 1 3.7767 4.6605 0.0016 30 1 5.8108 2.7309 0.8809 31 1 4.9842 -0.1099 0.7784 32 1 2.4658 -1.3069 -2.1699 33 1 2.7413 0.4348 -1.9277 34 1 5.8783 0.1828 -2.4020 35 1 5.7476 0.6213 -4.1222 36 1 4.7853 1.4944 -2.9055 37 1 3.8462 -2.5923 -3.7494 38 1 5.2534 -1.8398 -4.5375 39 1 5.2837 -2.1698 -2.7884 40 1 5.3816 -0.1941 -6.8702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840709752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:04 Heat of formation + Delta-G solvation = -54.640638 kcal Electronic energy + Delta-G solvation = -22530.968298 eV Core-core repulsion = 19310.980560 eV Total energy + Delta-G solvation = -3219.987738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.50552 -39.38743 -38.54385 -36.88233 -35.99209 -33.19699 -31.16680 -30.33130 -28.32744 -27.63435 -27.45538 -27.04885 -24.28619 -23.06047 -21.60443 -20.13772 -19.34722 -18.10741 -17.76643 -17.47080 -17.02445 -16.88454 -16.60504 -15.79814 -15.60963 -15.25769 -15.12185 -15.00430 -14.21186 -14.03137 -13.58697 -13.37793 -13.16403 -13.07074 -12.91910 -12.73813 -12.54964 -12.33829 -12.25193 -12.13439 -11.92766 -11.85125 -11.61749 -11.28075 -10.81279 -10.65077 -10.38341 -9.93010 -9.51258 -9.11610 -8.00813 -6.19374 0.11079 0.38503 1.38865 1.39140 1.48449 1.52666 2.26837 2.42938 2.67000 3.20048 3.40192 3.69057 3.78196 4.00458 4.16024 4.26434 4.35890 4.40966 4.50804 4.56879 4.67538 4.68480 4.80499 4.87727 5.00526 5.09313 5.16912 5.22166 5.34289 5.35368 5.44209 5.45541 5.50453 5.63803 5.65715 5.69093 6.11497 6.24760 6.40636 6.44175 6.85326 6.93960 7.10137 7.47780 8.98001 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016349 B = 0.006370 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.229993 B = 4394.323514 C = 4537.453334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.150 3.850 4 C -0.229 4.229 5 C -0.054 4.054 6 C -0.196 4.196 7 C 0.164 3.836 8 O -0.500 6.500 9 C -0.192 4.192 10 C 0.181 3.819 11 N -0.509 5.509 12 C 0.075 3.925 13 C 0.067 3.933 14 C -0.097 4.097 15 C -0.110 4.110 16 C -0.525 4.525 17 H 0.042 0.958 18 C 0.021 3.979 19 N -0.905 5.905 20 Si 0.950 3.050 21 H -0.277 1.277 22 H -0.281 1.281 23 H -0.270 1.270 24 H 0.056 0.944 25 H 0.110 0.890 26 H 0.080 0.920 27 H 0.153 0.847 28 H 0.162 0.838 29 H 0.151 0.849 30 H 0.413 0.587 31 H 0.177 0.823 32 H 0.046 0.954 33 H 0.031 0.969 34 H 0.018 0.982 35 H 0.051 0.949 36 H 0.006 0.994 37 H 0.012 0.988 38 H 0.058 0.942 39 H 0.024 0.976 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 8.060 16.361 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C 0.102 3.898 4 C -0.247 4.247 5 C -0.072 4.072 6 C -0.215 4.215 7 C 0.117 3.883 8 O -0.314 6.314 9 C -0.196 4.196 10 C -0.031 4.031 11 N -0.214 5.214 12 C -0.054 4.054 13 C 0.067 3.933 14 C -0.155 4.155 15 C -0.168 4.168 16 C -0.563 4.563 17 H 0.061 0.939 18 C -0.178 4.178 19 N -0.544 5.544 20 Si 0.775 3.225 21 H -0.203 1.203 22 H -0.206 1.206 23 H -0.195 1.195 24 H 0.075 0.925 25 H 0.128 0.872 26 H 0.098 0.902 27 H 0.170 0.830 28 H 0.180 0.820 29 H 0.169 0.831 30 H 0.274 0.726 31 H 0.194 0.806 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.026 0.974 37 H 0.031 0.969 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.455 6.833 15.232 17.899 hybrid contribution -0.932 0.977 -0.518 1.447 sum -7.387 7.810 14.714 18.222 Atomic orbital electron populations 1.23320 0.76482 1.05245 1.02363 1.86103 1.23456 1.27008 1.87958 1.19058 0.91001 0.85367 0.94355 1.21462 1.01260 0.91780 1.10211 1.21226 0.94059 0.97851 0.94055 1.21565 0.94574 0.98503 1.06818 1.18337 0.83509 0.90421 0.96019 1.84793 1.15576 1.95299 1.35697 1.19719 0.91744 0.95950 1.12144 1.24755 0.94815 0.87118 0.96446 1.72049 1.17371 1.29922 1.02083 1.22180 0.94590 0.97726 0.90872 1.18126 0.92440 0.92675 0.90106 1.21409 0.98321 0.96605 0.99178 1.21563 0.98576 0.96765 0.99921 1.21325 0.95121 1.46302 0.93601 0.93943 1.25603 0.96179 0.95342 1.00682 1.69982 1.13568 1.48599 1.22220 0.85679 0.79275 0.78355 0.79152 1.20331 1.20637 1.19495 0.92533 0.87199 0.90178 0.82984 0.82033 0.83125 0.72632 0.80624 0.93570 0.95091 0.96296 0.92988 0.97433 0.96858 0.92335 0.95723 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.33 -10.54 8.37 -90.32 -0.76 -11.30 16 3 C 0.15 4.66 5.07 22.83 0.12 4.78 16 4 C -0.23 -5.64 9.03 22.34 0.20 -5.44 16 5 C -0.05 -1.16 10.02 22.28 0.22 -0.94 16 6 C -0.20 -4.69 9.97 22.34 0.22 -4.47 16 7 C 0.16 4.72 6.72 22.83 0.15 4.88 16 8 O -0.50 -13.15 12.95 -90.30 -1.17 -14.32 16 9 C -0.19 -6.31 4.58 -19.97 -0.09 -6.40 16 10 C 0.18 6.38 10.13 87.37 0.88 7.27 16 11 N -0.51 -21.97 9.08 -341.04 -3.10 -25.07 16 12 C 0.08 3.64 3.67 86.38 0.32 3.96 16 13 C 0.07 3.64 0.57 -52.92 -0.03 3.61 16 14 C -0.10 -5.28 7.97 71.98 0.57 -4.71 16 15 C -0.11 -6.03 8.13 71.98 0.59 -5.45 16 16 C -0.52 -30.46 8.01 25.60 0.21 -30.26 16 17 H 0.04 2.46 7.74 -2.91 -0.02 2.44 16 18 C 0.02 1.19 5.12 84.65 0.43 1.63 16 19 N -0.90 -53.26 9.35 21.45 0.20 -53.06 16 20 Si 0.95 44.96 29.54 68.60 2.03 46.98 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 24 H 0.06 1.20 7.66 -2.38 -0.02 1.18 16 25 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.08 1.25 7.66 -2.39 -0.02 1.23 16 27 H 0.15 2.88 6.28 -2.91 -0.02 2.86 16 28 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 30 H 0.41 5.59 9.06 -74.06 -0.67 4.91 16 31 H 0.18 4.82 8.06 -2.91 -0.02 4.79 16 32 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.03 1.51 4.79 -2.39 -0.01 1.49 16 34 H 0.02 0.95 7.66 -2.39 -0.02 0.93 16 35 H 0.05 3.05 6.07 -2.39 -0.01 3.04 16 36 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.06 3.43 5.96 -2.39 -0.01 3.41 16 39 H 0.02 1.25 7.74 -2.38 -0.02 1.23 16 40 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -73.70 325.09 2.49 -71.21 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.38 Total: 15.54 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 4.91 Total: -30.00 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -2.90 Total: -78.12 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -1.93 Total: -25.62 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -73.70 2.49 -71.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840709752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.572 kcal (2) G-P(sol) polarization free energy of solvation -73.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds