Wall clock time and date at job start Mon Mar 30 2020 01:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35995 * 116.99886 * 2 1 4 4 C 1.38931 * 119.90742 * 0.02562 * 3 2 1 5 5 C 1.38084 * 120.33644 * 179.97438 * 4 3 2 6 6 C 1.38608 * 120.15402 * 359.97438 * 5 4 3 7 7 O 1.35784 * 120.09795 * 180.02562 * 6 5 4 8 8 C 1.40121 * 119.81489 * 0.02562 * 6 5 4 9 9 C 1.47380 * 120.16846 * 179.97438 * 8 6 5 10 10 N 1.29436 * 119.99701 * 359.72332 * 9 8 6 11 11 C 1.46504 * 119.99704 * 180.27816 * 10 9 8 12 12 C 1.52997 * 109.47300 * 115.00215 * 11 10 9 13 13 C 1.53003 * 109.46979 * 299.99758 * 12 11 10 14 14 C 1.53004 * 109.47221 * 59.99845 * 12 11 10 15 15 C 1.50694 * 109.47195 * 179.97438 * 12 11 10 16 16 H 1.08004 * 120.00182 * 0.02562 * 15 12 11 17 17 C 1.37885 * 120.00075 * 179.97438 * 15 12 11 18 18 N 1.31510 * 119.99573 * 359.97438 * 17 15 12 19 19 Si 1.86794 * 119.99810 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.47631 * 359.97438 * 19 17 15 21 21 H 1.48509 * 109.47119 * 119.99911 * 19 17 15 22 22 H 1.48502 * 109.47345 * 239.99839 * 19 17 15 23 23 C 1.38262 * 119.90850 * 180.25199 * 3 2 1 24 24 H 1.09000 * 109.47114 * 59.99516 * 1 2 3 25 25 H 1.08996 * 109.46929 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47174 * 299.99612 * 1 2 3 27 27 H 1.08002 * 119.83513 * 359.97081 * 4 3 2 28 28 H 1.08000 * 119.91998 * 179.97438 * 5 4 3 29 29 H 0.96699 * 114.00007 * 269.98089 * 7 6 5 30 30 H 1.08002 * 120.00374 * 180.02562 * 9 8 6 31 31 H 1.09004 * 109.46796 * 234.99818 * 11 10 9 32 32 H 1.09000 * 109.46970 * 354.99770 * 11 10 9 33 33 H 1.08998 * 109.46831 * 59.99906 * 13 12 11 34 34 H 1.09001 * 109.47055 * 179.97438 * 13 12 11 35 35 H 1.08998 * 109.46821 * 299.99869 * 13 12 11 36 36 H 1.08995 * 109.46953 * 59.99696 * 14 12 11 37 37 H 1.09001 * 109.47318 * 180.02562 * 14 12 11 38 38 H 1.09007 * 109.46815 * 300.00359 * 14 12 11 39 39 H 0.97001 * 119.99742 * 179.97438 * 18 17 15 40 40 H 1.08000 * 120.08202 * 0.03245 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2878 2.3757 0.0005 5 6 1.9054 3.6107 0.0011 6 6 3.2888 3.6973 0.0016 7 8 3.8950 4.9124 0.0027 8 6 4.0601 2.5275 0.0011 9 6 5.5316 2.6106 0.0011 10 7 6.1145 3.7662 -0.0038 11 6 7.5772 3.8488 -0.0100 12 6 8.0467 4.4833 -1.3206 13 6 7.5794 3.6259 -2.4985 14 6 7.4560 5.8891 -1.4470 15 6 9.5512 4.5688 -1.3266 16 1 10.1161 4.2063 -0.4805 17 6 10.2067 5.1088 -2.4129 18 7 9.5189 5.5487 -3.4438 19 14 12.0717 5.2140 -2.4206 20 1 12.6044 4.6549 -1.1522 21 1 12.6066 4.4372 -3.5677 22 1 12.4869 6.6341 -2.5479 23 6 3.4272 1.2819 -0.0053 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2095 2.3143 0.0005 28 1 1.3092 4.5112 0.0011 29 1 4.0711 5.2648 -0.8804 30 1 6.1235 1.7072 0.0002 31 1 7.9101 4.4596 0.8292 32 1 7.9980 2.8473 0.0801 33 1 6.4911 3.5645 -2.4939 34 1 7.9135 4.0782 -3.4322 35 1 8.0002 2.6245 -2.4084 36 1 7.7889 6.4998 -0.6078 37 1 7.7902 6.3410 -2.3809 38 1 6.3677 5.8276 -1.4424 39 1 9.9800 5.9289 -4.2079 40 1 4.0153 0.3761 -0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840710619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:08 Heat of formation + Delta-G solvation = -33.119296 kcal Electronic energy + Delta-G solvation = -21277.188321 eV Core-core repulsion = 18058.133819 eV Total energy + Delta-G solvation = -3219.054502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23602 -38.46483 -36.79591 -35.59030 -34.21101 -31.64447 -30.62318 -29.15998 -27.17885 -25.89140 -25.49697 -25.07642 -22.65401 -22.46240 -20.11670 -18.50610 -17.87428 -17.59559 -16.40702 -15.92549 -15.87679 -15.10231 -14.96461 -14.66039 -14.32190 -13.78390 -13.60318 -13.29258 -12.91291 -12.72459 -12.36499 -12.24400 -12.08126 -11.58547 -11.39348 -11.17997 -11.09168 -10.79187 -10.62773 -10.40108 -10.28290 -10.12542 -10.08162 -9.45144 -9.30672 -8.87434 -8.44932 -8.38294 -8.31037 -7.86425 -5.96382 -4.07296 0.95240 1.38000 2.88510 3.12601 3.28201 3.36602 3.40323 3.84785 4.40200 4.51689 4.65380 4.70456 4.92098 4.93369 5.00643 5.14069 5.24505 5.29489 5.45520 5.71241 5.92542 6.00204 6.11718 6.24720 6.31364 6.46928 6.58050 6.62041 6.74168 6.86386 7.07606 7.11542 7.25754 7.30726 7.45911 7.69027 7.75350 8.10256 8.11542 8.24093 8.40235 8.51273 8.93635 9.58015 11.04299 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038023 B = 0.003535 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.217145 B = 7918.180839 C = 8206.069102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.107 3.893 4 C -0.188 4.188 5 C -0.117 4.117 6 C 0.112 3.888 7 O -0.469 6.469 8 C -0.037 4.037 9 C 0.127 3.873 10 N -0.446 5.446 11 C 0.043 3.957 12 C 0.078 3.922 13 C -0.130 4.130 14 C -0.120 4.120 15 C -0.509 4.509 16 H 0.054 0.946 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.891 3.109 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.118 4.118 24 H 0.054 0.946 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.389 0.611 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.030 0.970 33 H 0.009 0.991 34 H 0.084 0.916 35 H 0.019 0.981 36 H 0.021 0.979 37 H 0.076 0.924 38 H 0.018 0.982 39 H 0.258 0.742 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.523 -7.812 4.771 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.063 3.937 4 C -0.208 4.208 5 C -0.136 4.136 6 C 0.064 3.936 7 O -0.280 6.280 8 C -0.039 4.039 9 C -0.083 4.083 10 N -0.153 5.153 11 C -0.086 4.086 12 C 0.077 3.923 13 C -0.188 4.188 14 C -0.178 4.178 15 C -0.548 4.548 16 H 0.072 0.928 17 C -0.135 4.135 18 N -0.523 5.523 19 Si 0.719 3.281 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.139 4.139 24 H 0.073 0.927 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.247 0.753 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.028 0.972 34 H 0.102 0.898 35 H 0.038 0.962 36 H 0.040 0.960 37 H 0.095 0.905 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.421 -6.968 5.201 19.470 hybrid contribution 1.303 -0.561 -0.525 1.513 sum -16.118 -7.530 4.676 18.394 Atomic orbital electron populations 1.23018 0.78695 1.03717 1.01247 1.86083 1.21096 1.26850 1.89241 1.18746 0.92017 0.84105 0.98874 1.21099 0.99814 0.91853 1.08018 1.21198 0.94019 0.97601 1.00782 1.18517 0.89439 0.85535 1.00083 1.84807 1.79967 1.29994 1.33191 1.19143 0.92715 0.91952 1.00066 1.23756 0.91760 0.94198 0.98590 1.71828 1.13648 1.26405 1.03465 1.22829 0.84017 0.99673 1.02042 1.18089 0.94411 0.92273 0.87501 1.21819 0.95594 0.98072 1.03323 1.21669 0.96199 0.98056 1.01850 1.21130 0.90642 1.40240 1.02767 0.92761 1.24885 0.98046 0.95129 0.95473 1.69840 1.34595 1.41235 1.06610 0.86556 0.85926 0.77680 0.77925 1.19874 1.21094 1.21030 1.20330 0.91296 0.97511 1.04800 0.92743 0.88434 0.92776 0.85431 0.85193 0.75324 0.88877 0.90413 0.95211 0.97225 0.89767 0.96214 0.95979 0.90482 0.96298 0.93137 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.53 10.49 -19.73 -0.21 -3.74 16 3 C 0.11 1.31 6.68 -39.32 -0.26 1.04 16 4 C -0.19 -2.07 9.02 -39.38 -0.36 -2.42 16 5 C -0.12 -1.43 9.97 -39.50 -0.39 -1.82 16 6 C 0.11 1.66 6.71 -38.74 -0.26 1.40 16 7 O -0.47 -7.52 11.37 -19.06 -0.22 -7.74 16 8 C -0.04 -0.57 5.88 -104.92 -0.62 -1.18 16 9 C 0.13 2.18 10.26 -14.84 -0.15 2.02 16 10 N -0.45 -8.73 6.85 -59.08 -0.40 -9.14 16 11 C 0.04 0.94 5.22 -4.04 -0.02 0.92 16 12 C 0.08 1.91 0.57 -155.66 -0.09 1.82 16 13 C -0.13 -3.16 8.09 37.16 0.30 -2.86 16 14 C -0.12 -2.93 8.09 37.16 0.30 -2.63 16 15 C -0.51 -13.74 8.01 -34.44 -0.28 -14.02 16 16 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 17 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 18 N -0.88 -24.43 9.35 55.43 0.52 -23.91 16 19 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.12 -1.57 9.72 -39.02 -0.38 -1.95 16 24 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 25 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 27 H 0.13 1.04 6.27 -52.49 -0.33 0.71 16 28 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 29 H 0.39 5.47 9.06 45.56 0.41 5.89 16 30 H 0.09 1.46 7.76 -52.49 -0.41 1.06 16 31 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.03 0.63 7.69 -51.93 -0.40 0.23 16 33 H 0.01 0.20 7.45 -51.93 -0.39 -0.19 16 34 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 2.05 6.07 -51.93 -0.32 1.73 16 38 H 0.02 0.41 7.60 -51.93 -0.39 0.01 16 39 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -29.94 330.12 -6.67 -36.61 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.01 Total: 3.68 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -1.31 Total: -16.80 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.11 Total: -33.05 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.42 Total: -11.48 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.94 -6.67 -36.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840710619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.494 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds