Wall clock time and date at job start Mon Mar 30 2020 01:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35995 * 116.99886 * 2 1 4 4 C 1.38931 * 119.90742 * 0.02562 * 3 2 1 5 5 C 1.38084 * 120.33644 * 179.97438 * 4 3 2 6 6 C 1.38608 * 120.15402 * 359.97438 * 5 4 3 7 7 O 1.35784 * 120.09795 * 180.02562 * 6 5 4 8 8 C 1.40121 * 119.81489 * 0.02562 * 6 5 4 9 9 C 1.47380 * 120.16846 * 179.97438 * 8 6 5 10 10 N 1.29436 * 119.99701 * 359.72332 * 9 8 6 11 11 C 1.46504 * 119.99704 * 180.27816 * 10 9 8 12 12 C 1.52997 * 109.47300 * 115.00215 * 11 10 9 13 13 C 1.53003 * 109.46979 * 299.99758 * 12 11 10 14 14 C 1.53004 * 109.47221 * 59.99845 * 12 11 10 15 15 C 1.50694 * 109.47195 * 179.97438 * 12 11 10 16 16 H 1.08004 * 120.00182 * 0.02562 * 15 12 11 17 17 C 1.37885 * 120.00075 * 179.97438 * 15 12 11 18 18 N 1.31510 * 119.99573 * 359.97438 * 17 15 12 19 19 Si 1.86794 * 119.99810 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.47631 * 359.97438 * 19 17 15 21 21 H 1.48509 * 109.47119 * 119.99911 * 19 17 15 22 22 H 1.48502 * 109.47345 * 239.99839 * 19 17 15 23 23 C 1.38262 * 119.90850 * 180.25199 * 3 2 1 24 24 H 1.09000 * 109.47114 * 59.99516 * 1 2 3 25 25 H 1.08996 * 109.46929 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47174 * 299.99612 * 1 2 3 27 27 H 1.08002 * 119.83513 * 359.97081 * 4 3 2 28 28 H 1.08000 * 119.91998 * 179.97438 * 5 4 3 29 29 H 0.96699 * 114.00007 * 269.98089 * 7 6 5 30 30 H 1.08002 * 120.00374 * 180.02562 * 9 8 6 31 31 H 1.09004 * 109.46796 * 234.99818 * 11 10 9 32 32 H 1.09000 * 109.46970 * 354.99770 * 11 10 9 33 33 H 1.08998 * 109.46831 * 59.99906 * 13 12 11 34 34 H 1.09001 * 109.47055 * 179.97438 * 13 12 11 35 35 H 1.08998 * 109.46821 * 299.99869 * 13 12 11 36 36 H 1.08995 * 109.46953 * 59.99696 * 14 12 11 37 37 H 1.09001 * 109.47318 * 180.02562 * 14 12 11 38 38 H 1.09007 * 109.46815 * 300.00359 * 14 12 11 39 39 H 0.97001 * 119.99742 * 179.97438 * 18 17 15 40 40 H 1.08000 * 120.08202 * 0.03245 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2878 2.3757 0.0005 5 6 1.9054 3.6107 0.0011 6 6 3.2888 3.6973 0.0016 7 8 3.8950 4.9124 0.0027 8 6 4.0601 2.5275 0.0011 9 6 5.5316 2.6106 0.0011 10 7 6.1145 3.7662 -0.0038 11 6 7.5772 3.8488 -0.0100 12 6 8.0467 4.4833 -1.3206 13 6 7.5794 3.6259 -2.4985 14 6 7.4560 5.8891 -1.4470 15 6 9.5512 4.5688 -1.3266 16 1 10.1161 4.2063 -0.4805 17 6 10.2067 5.1088 -2.4129 18 7 9.5189 5.5487 -3.4438 19 14 12.0717 5.2140 -2.4206 20 1 12.6044 4.6549 -1.1522 21 1 12.6066 4.4372 -3.5677 22 1 12.4869 6.6341 -2.5479 23 6 3.4272 1.2819 -0.0053 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2095 2.3143 0.0005 28 1 1.3092 4.5112 0.0011 29 1 4.0711 5.2648 -0.8804 30 1 6.1235 1.7072 0.0002 31 1 7.9101 4.4596 0.8292 32 1 7.9980 2.8473 0.0801 33 1 6.4911 3.5645 -2.4939 34 1 7.9135 4.0782 -3.4322 35 1 8.0002 2.6245 -2.4084 36 1 7.7889 6.4998 -0.6078 37 1 7.7902 6.3410 -2.3809 38 1 6.3677 5.8276 -1.4424 39 1 9.9800 5.9289 -4.2079 40 1 4.0153 0.3761 -0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840710619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:07 Heat of formation + Delta-G solvation = -52.142210 kcal Electronic energy + Delta-G solvation = -21278.013216 eV Core-core repulsion = 18058.133819 eV Total energy + Delta-G solvation = -3219.879398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.17013 -39.48188 -38.47397 -36.65912 -35.80927 -33.31201 -31.94374 -30.17883 -27.88692 -27.63496 -27.39297 -26.97398 -23.89820 -23.47688 -21.37987 -20.24503 -18.93973 -18.57587 -17.95011 -17.37797 -16.77823 -16.60631 -16.14618 -16.03338 -15.62835 -15.17830 -14.85585 -14.66885 -14.18689 -14.14354 -13.73158 -13.44026 -13.21192 -13.18927 -13.02335 -12.72161 -12.52424 -12.32420 -12.21476 -12.12307 -12.10931 -11.62777 -11.44751 -11.21836 -10.95519 -10.72946 -10.39491 -9.93260 -9.59593 -8.89806 -8.01359 -6.19125 -0.12561 0.39681 1.40105 1.43112 1.52853 1.65241 2.35695 2.44492 2.78531 3.20910 3.37295 3.51978 3.80447 3.96530 4.11966 4.34252 4.37528 4.48976 4.54921 4.62878 4.63331 4.76320 4.80763 4.91852 4.95625 5.04439 5.12267 5.15080 5.20850 5.31036 5.36928 5.46674 5.53938 5.64701 5.67602 5.69179 6.12695 6.24407 6.43498 6.45551 6.85643 7.00056 7.05109 7.48776 8.97359 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038023 B = 0.003535 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.217145 B = 7918.180839 C = 8206.069102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.106 3.894 4 C -0.173 4.173 5 C -0.116 4.116 6 C 0.093 3.907 7 O -0.486 6.486 8 C -0.064 4.064 9 C 0.145 3.855 10 N -0.476 5.476 11 C 0.055 3.945 12 C 0.070 3.930 13 C -0.114 4.114 14 C -0.106 4.106 15 C -0.530 4.530 16 H 0.047 0.953 17 C 0.023 3.977 18 N -0.903 5.903 19 Si 0.949 3.051 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 C -0.121 4.121 24 H 0.066 0.934 25 H 0.117 0.883 26 H 0.067 0.933 27 H 0.162 0.838 28 H 0.151 0.849 29 H 0.393 0.607 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.022 0.978 34 H 0.058 0.942 35 H 0.016 0.984 36 H 0.012 0.988 37 H 0.052 0.948 38 H 0.034 0.966 39 H 0.259 0.741 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.597 -8.973 5.133 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.060 3.940 4 C -0.192 4.192 5 C -0.134 4.134 6 C 0.045 3.955 7 O -0.297 6.297 8 C -0.065 4.065 9 C -0.065 4.065 10 N -0.183 5.183 11 C -0.074 4.074 12 C 0.069 3.931 13 C -0.172 4.172 14 C -0.164 4.164 15 C -0.569 4.569 16 H 0.065 0.935 17 C -0.176 4.176 18 N -0.542 5.542 19 Si 0.775 3.225 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.142 4.142 24 H 0.085 0.915 25 H 0.136 0.864 26 H 0.085 0.915 27 H 0.180 0.820 28 H 0.169 0.831 29 H 0.250 0.750 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.031 0.969 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.510 -8.139 5.566 21.860 hybrid contribution 1.712 -0.341 -0.619 1.852 sum -17.799 -8.480 4.947 20.327 Atomic orbital electron populations 1.23370 0.76355 1.05619 1.02422 1.86078 1.23510 1.26208 1.88934 1.18844 0.91835 0.85104 0.98173 1.21471 1.01499 0.90793 1.05441 1.21409 0.92979 0.99056 0.99966 1.18812 0.90631 0.84951 1.01090 1.84781 1.80443 1.30727 1.33752 1.19102 0.91535 0.93095 1.02797 1.24187 0.93166 0.93962 0.95162 1.71884 1.11563 1.27463 1.07399 1.22489 0.86012 0.98929 0.99982 1.18091 0.93349 0.92485 0.89163 1.21605 0.96206 0.97444 1.01933 1.21489 0.97099 0.97837 0.99966 1.21435 0.92256 1.40489 1.02685 0.93485 1.25555 1.01900 0.94916 0.95237 1.69965 1.35902 1.41467 1.06894 0.85649 0.81311 0.77598 0.77899 1.19603 1.20690 1.20769 1.20449 0.92313 0.97086 1.04328 0.91529 0.86437 0.91488 0.82042 0.83124 0.74969 0.87762 0.91675 0.95394 0.95949 0.92298 0.96525 0.96901 0.92892 0.94703 0.93145 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -6.36 10.49 -93.50 -0.98 -7.35 16 3 C 0.11 2.28 6.68 22.44 0.15 2.43 16 4 C -0.17 -3.19 9.02 22.40 0.20 -2.98 16 5 C -0.12 -2.52 9.97 22.32 0.22 -2.30 16 6 C 0.09 2.64 6.71 22.82 0.15 2.80 16 7 O -0.49 -15.46 11.37 -91.13 -1.04 -16.49 16 8 C -0.06 -1.88 5.88 -20.06 -0.12 -1.99 16 9 C 0.15 4.90 10.26 87.45 0.90 5.80 16 10 N -0.48 -18.70 6.85 -340.85 -2.33 -21.03 16 11 C 0.06 2.44 5.22 86.38 0.45 2.89 16 12 C 0.07 3.48 0.57 -52.93 -0.03 3.45 16 13 C -0.11 -5.60 8.09 71.98 0.58 -5.01 16 14 C -0.11 -5.29 8.09 71.98 0.58 -4.71 16 15 C -0.53 -29.11 8.01 25.60 0.21 -28.90 16 16 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 17 C 0.02 1.27 5.15 84.66 0.44 1.70 16 18 N -0.90 -50.71 9.35 21.45 0.20 -50.51 16 19 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 C -0.12 -3.00 9.72 22.63 0.22 -2.78 16 24 H 0.07 0.51 7.65 -2.39 -0.02 0.49 16 25 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.50 7.65 -2.39 -0.02 0.48 16 27 H 0.16 1.84 6.27 -2.91 -0.02 1.83 16 28 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 29 H 0.39 11.12 9.06 -74.06 -0.67 10.45 16 30 H 0.11 3.21 7.76 -2.91 -0.02 3.19 16 31 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.03 1.20 7.69 -2.39 -0.02 1.18 16 33 H 0.02 0.99 7.45 -2.39 -0.02 0.97 16 34 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 35 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.05 2.87 6.07 -2.39 -0.01 2.86 16 38 H 0.03 1.57 7.60 -2.38 -0.02 1.55 16 39 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 40 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -64.40 330.12 3.31 -61.09 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.37 Total: 17.00 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: 5.06 Total: -28.33 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -2.13 Total: -71.54 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -2.02 Total: -23.84 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -64.40 3.31 -61.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840710619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.949 kcal (2) G-P(sol) polarization free energy of solvation -64.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds