Wall clock time and date at job start Mon Mar 30 2020 01:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35990 * 116.99929 * 2 1 4 4 C 1.38939 * 119.90667 * 0.02562 * 3 2 1 5 5 C 1.38091 * 120.33289 * 179.74608 * 4 3 2 6 6 C 1.38611 * 120.15368 * 0.25196 * 5 4 3 7 7 O 1.35783 * 120.08937 * 179.97438 * 6 5 4 8 8 C 1.40117 * 119.81449 * 359.97438 * 6 5 4 9 9 C 1.47391 * 120.16288 * 180.02562 * 8 6 5 10 10 N 1.29431 * 119.99832 * 209.46562 * 9 8 6 11 11 C 1.46499 * 119.99693 * 13.62821 * 10 9 8 12 12 C 1.52999 * 109.46969 * 123.66218 * 11 10 9 13 13 C 1.53001 * 109.47448 * 304.28019 * 12 11 10 14 14 C 1.53003 * 109.47223 * 64.27765 * 12 11 10 15 15 C 1.50702 * 109.47499 * 184.27659 * 12 11 10 16 16 H 1.08002 * 119.99393 * 0.02562 * 15 12 11 17 17 C 1.37870 * 120.00452 * 179.97438 * 15 12 11 18 18 N 1.31520 * 120.00156 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00155 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.46712 * 90.00330 * 19 17 15 21 21 H 1.48495 * 109.47249 * 210.00196 * 19 17 15 22 22 H 1.48496 * 109.46977 * 330.00694 * 19 17 15 23 23 C 1.38265 * 119.91020 * 180.25549 * 3 2 1 24 24 H 1.09006 * 109.46981 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47293 * 299.99887 * 1 2 3 26 26 H 1.08997 * 109.47149 * 60.00092 * 1 2 3 27 27 H 1.07997 * 119.83208 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.91675 * 180.27434 * 5 4 3 29 29 H 0.96703 * 114.00652 * 84.99092 * 7 6 5 30 30 H 1.08001 * 119.99812 * 29.46738 * 9 8 6 31 31 H 1.09002 * 109.47192 * 243.65667 * 11 10 9 32 32 H 1.08997 * 109.47595 * 3.66240 * 11 10 9 33 33 H 1.09000 * 109.47037 * 64.38027 * 13 12 11 34 34 H 1.08998 * 109.47510 * 184.38859 * 13 12 11 35 35 H 1.09000 * 109.46529 * 304.38786 * 13 12 11 36 36 H 1.08998 * 109.46993 * 60.00229 * 14 12 11 37 37 H 1.08998 * 109.47375 * 180.02562 * 14 12 11 38 38 H 1.08999 * 109.47125 * 299.99903 * 14 12 11 39 39 H 0.96994 * 120.00263 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.08031 * 359.97209 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2877 2.3757 0.0005 5 6 1.9054 3.6107 0.0058 6 6 3.2888 3.6973 0.0054 7 8 3.8949 4.9124 0.0100 8 6 4.0600 2.5275 0.0001 9 6 5.5316 2.6106 0.0001 10 7 6.2326 1.6751 -0.5555 11 6 5.5850 0.6990 -1.4352 12 6 6.2687 0.7134 -2.8039 13 6 6.2453 2.1343 -3.3708 14 6 7.7185 0.2478 -2.6547 15 6 5.5375 -0.2133 -3.7406 16 1 4.6714 -0.7578 -3.3945 17 6 5.9734 -0.3653 -5.0398 18 7 7.0278 0.2981 -5.4615 19 14 5.0674 -1.5146 -6.2006 20 1 4.0008 -0.7625 -6.9092 21 1 6.0227 -2.0711 -7.1919 22 1 4.4581 -2.6237 -5.4236 23 6 3.4272 1.2819 -0.0053 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2095 2.3142 0.0014 28 1 1.3091 4.5112 0.0107 29 1 4.0020 5.2952 0.8916 30 1 6.0249 3.4521 0.4638 31 1 5.6686 -0.2960 -0.9979 32 1 4.5325 0.9572 -1.5522 33 1 6.8397 2.7894 -2.7340 34 1 6.6619 2.1306 -4.3780 35 1 5.2173 2.4951 -3.4042 36 1 7.7353 -0.7645 -2.2509 37 1 8.2058 0.2585 -3.6296 38 1 8.2475 0.9181 -1.9772 39 1 7.3348 0.1909 -6.3753 40 1 4.0153 0.3760 -0.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840710621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:11 Heat of formation + Delta-G solvation = -23.897930 kcal Electronic energy + Delta-G solvation = -21924.470118 eV Core-core repulsion = 18705.815484 eV Total energy + Delta-G solvation = -3218.654634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38635 -38.57841 -37.20479 -35.63062 -34.28974 -31.25114 -30.46316 -29.16214 -27.13357 -26.21266 -25.41968 -25.03093 -22.94329 -22.26210 -20.06068 -18.83381 -18.10783 -17.12391 -16.62829 -15.86003 -15.81081 -15.38706 -14.81191 -14.71541 -14.40944 -13.87748 -13.49881 -13.38313 -12.93204 -12.50126 -12.30456 -12.25926 -12.02936 -11.46078 -11.41409 -11.09619 -10.99380 -10.79933 -10.61188 -10.55701 -10.26227 -10.06154 -9.85858 -9.37072 -9.20639 -8.97977 -8.61282 -8.24680 -8.01487 -7.92625 -5.88448 -3.99476 0.98697 1.34867 2.78745 3.25439 3.33080 3.39591 3.43073 3.72608 4.24763 4.46853 4.72584 4.77014 4.98681 5.05527 5.11210 5.14642 5.35429 5.36685 5.42915 5.48815 5.90440 5.97638 6.21652 6.29317 6.36828 6.46777 6.49313 6.71665 6.80747 6.97400 7.16696 7.29827 7.33101 7.40636 7.55631 7.72194 7.79637 7.82359 8.21796 8.33259 8.40635 8.58378 9.01466 9.65165 11.12052 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015408 B = 0.006038 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.750838 B = 4636.042127 C = 5693.731828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.116 3.884 4 C -0.187 4.187 5 C -0.115 4.115 6 C 0.091 3.909 7 O -0.488 6.488 8 C -0.084 4.084 9 C 0.149 3.851 10 N -0.472 5.472 11 C 0.026 3.974 12 C 0.081 3.919 13 C -0.127 4.127 14 C -0.124 4.124 15 C -0.507 4.507 16 H 0.053 0.947 17 C 0.066 3.934 18 N -0.884 5.884 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.113 4.113 24 H 0.099 0.901 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.384 0.616 30 H 0.155 0.845 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.014 0.986 34 H 0.083 0.917 35 H 0.014 0.986 36 H 0.018 0.982 37 H 0.077 0.923 38 H 0.019 0.981 39 H 0.258 0.742 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.606 5.784 13.536 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.071 3.929 4 C -0.207 4.207 5 C -0.134 4.134 6 C 0.044 3.956 7 O -0.297 6.297 8 C -0.087 4.087 9 C -0.062 4.062 10 N -0.177 5.177 11 C -0.102 4.102 12 C 0.080 3.920 13 C -0.185 4.185 14 C -0.181 4.181 15 C -0.545 4.545 16 H 0.071 0.929 17 C -0.135 4.135 18 N -0.523 5.523 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.133 4.133 24 H 0.117 0.883 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.239 0.761 30 H 0.172 0.828 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.101 0.899 35 H 0.034 0.966 36 H 0.037 0.963 37 H 0.096 0.904 38 H 0.038 0.962 39 H 0.069 0.931 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.444 5.064 12.597 17.129 hybrid contribution -1.795 -0.345 -0.308 1.854 sum -12.239 4.719 12.289 17.974 Atomic orbital electron populations 1.23043 0.78620 1.03924 1.01139 1.86135 1.21167 1.26623 1.88819 1.18833 0.92042 0.84310 0.97762 1.21114 0.99929 0.91810 1.07843 1.21118 0.93879 0.97601 1.00810 1.18372 0.89767 0.84372 1.03042 1.84876 1.80700 1.30856 1.33279 1.20230 0.96391 0.91798 1.00305 1.24500 0.87119 0.96248 0.98340 1.72035 1.39310 1.03266 1.03048 1.23269 0.97806 0.93962 0.95135 1.18050 0.92904 0.93773 0.87289 1.21760 0.97545 0.96250 1.02951 1.21707 0.98207 0.96928 1.01293 1.21095 1.12678 1.25070 0.95695 0.92910 1.24869 0.94972 0.95778 0.97880 1.69839 1.23989 1.41648 1.16785 0.86645 0.79571 0.81217 0.80864 1.20834 1.21215 1.19989 1.20765 0.91646 0.98214 1.02677 0.88277 0.92849 0.92610 0.85249 0.85192 0.76084 0.82848 0.91205 0.92527 0.96719 0.89883 0.96650 0.96277 0.90387 0.96177 0.93133 0.83887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.52 10.49 -19.71 -0.21 -4.72 16 3 C 0.12 1.73 6.68 -39.31 -0.26 1.47 16 4 C -0.19 -2.34 9.03 -39.38 -0.36 -2.69 16 5 C -0.12 -1.42 9.97 -39.50 -0.39 -1.81 16 6 C 0.09 1.27 6.72 -38.74 -0.26 1.01 16 7 O -0.49 -5.89 12.88 -19.06 -0.25 -6.13 16 8 C -0.08 -1.34 5.29 -104.92 -0.55 -1.90 16 9 C 0.15 2.51 10.69 -14.84 -0.16 2.35 16 10 N -0.47 -9.57 9.14 -59.09 -0.54 -10.11 16 11 C 0.03 0.59 3.35 -4.04 -0.01 0.57 16 12 C 0.08 2.09 0.57 -155.66 -0.09 2.00 16 13 C -0.13 -3.33 8.02 37.16 0.30 -3.04 16 14 C -0.12 -3.20 8.13 37.16 0.30 -2.90 16 15 C -0.51 -14.24 8.01 -34.44 -0.28 -14.52 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.07 1.85 5.14 -17.82 -0.09 1.76 16 18 N -0.88 -25.34 9.33 55.43 0.52 -24.82 16 19 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.11 -1.88 7.28 -39.02 -0.28 -2.16 16 24 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 26 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 27 H 0.13 1.24 6.27 -52.49 -0.33 0.91 16 28 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 29 H 0.38 2.45 9.06 45.56 0.41 2.86 16 30 H 0.15 2.08 7.95 -52.49 -0.42 1.66 16 31 H 0.07 1.58 7.86 -51.93 -0.41 1.17 16 32 H 0.06 1.28 4.46 -51.93 -0.23 1.05 16 33 H 0.01 0.35 7.65 -51.93 -0.40 -0.05 16 34 H 0.08 2.35 5.96 -51.93 -0.31 2.04 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 38 H 0.02 0.48 7.73 -51.93 -0.40 0.08 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.14 2.56 5.76 -52.48 -0.30 2.25 16 LS Contribution 324.00 15.07 4.88 4.88 Total: -1.00 -32.67 324.00 -6.49 -39.16 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -4.73 Total: 3.66 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -1.15 Total: -18.61 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.02 Total: -34.94 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.45 Total: -10.86 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.67 -6.49 -39.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840710621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.261 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds