Wall clock time and date at job start Mon Mar 30 2020 01:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35990 * 116.99929 * 2 1 4 4 C 1.38939 * 119.90667 * 0.02562 * 3 2 1 5 5 C 1.38091 * 120.33289 * 179.74608 * 4 3 2 6 6 C 1.38611 * 120.15368 * 0.25196 * 5 4 3 7 7 O 1.35783 * 120.08937 * 179.97438 * 6 5 4 8 8 C 1.40117 * 119.81449 * 359.97438 * 6 5 4 9 9 C 1.47391 * 120.16288 * 180.02562 * 8 6 5 10 10 N 1.29431 * 119.99832 * 209.46562 * 9 8 6 11 11 C 1.46499 * 119.99693 * 13.62821 * 10 9 8 12 12 C 1.52999 * 109.46969 * 123.66218 * 11 10 9 13 13 C 1.53001 * 109.47448 * 304.28019 * 12 11 10 14 14 C 1.53003 * 109.47223 * 64.27765 * 12 11 10 15 15 C 1.50702 * 109.47499 * 184.27659 * 12 11 10 16 16 H 1.08002 * 119.99393 * 0.02562 * 15 12 11 17 17 C 1.37870 * 120.00452 * 179.97438 * 15 12 11 18 18 N 1.31520 * 120.00156 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00155 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.46712 * 90.00330 * 19 17 15 21 21 H 1.48495 * 109.47249 * 210.00196 * 19 17 15 22 22 H 1.48496 * 109.46977 * 330.00694 * 19 17 15 23 23 C 1.38265 * 119.91020 * 180.25549 * 3 2 1 24 24 H 1.09006 * 109.46981 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47293 * 299.99887 * 1 2 3 26 26 H 1.08997 * 109.47149 * 60.00092 * 1 2 3 27 27 H 1.07997 * 119.83208 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.91675 * 180.27434 * 5 4 3 29 29 H 0.96703 * 114.00652 * 84.99092 * 7 6 5 30 30 H 1.08001 * 119.99812 * 29.46738 * 9 8 6 31 31 H 1.09002 * 109.47192 * 243.65667 * 11 10 9 32 32 H 1.08997 * 109.47595 * 3.66240 * 11 10 9 33 33 H 1.09000 * 109.47037 * 64.38027 * 13 12 11 34 34 H 1.08998 * 109.47510 * 184.38859 * 13 12 11 35 35 H 1.09000 * 109.46529 * 304.38786 * 13 12 11 36 36 H 1.08998 * 109.46993 * 60.00229 * 14 12 11 37 37 H 1.08998 * 109.47375 * 180.02562 * 14 12 11 38 38 H 1.08999 * 109.47125 * 299.99903 * 14 12 11 39 39 H 0.96994 * 120.00263 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.08031 * 359.97209 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2877 2.3757 0.0005 5 6 1.9054 3.6107 0.0058 6 6 3.2888 3.6973 0.0054 7 8 3.8949 4.9124 0.0100 8 6 4.0600 2.5275 0.0001 9 6 5.5316 2.6106 0.0001 10 7 6.2326 1.6751 -0.5555 11 6 5.5850 0.6990 -1.4352 12 6 6.2687 0.7134 -2.8039 13 6 6.2453 2.1343 -3.3708 14 6 7.7185 0.2478 -2.6547 15 6 5.5375 -0.2133 -3.7406 16 1 4.6714 -0.7578 -3.3945 17 6 5.9734 -0.3653 -5.0398 18 7 7.0278 0.2981 -5.4615 19 14 5.0674 -1.5146 -6.2006 20 1 4.0008 -0.7625 -6.9092 21 1 6.0227 -2.0711 -7.1919 22 1 4.4581 -2.6237 -5.4236 23 6 3.4272 1.2819 -0.0053 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2095 2.3142 0.0014 28 1 1.3091 4.5112 0.0107 29 1 4.0020 5.2952 0.8916 30 1 6.0249 3.4521 0.4638 31 1 5.6686 -0.2960 -0.9979 32 1 4.5325 0.9572 -1.5522 33 1 6.8397 2.7894 -2.7340 34 1 6.6619 2.1306 -4.3780 35 1 5.2173 2.4951 -3.4042 36 1 7.7353 -0.7645 -2.2509 37 1 8.2058 0.2585 -3.6296 38 1 8.2475 0.9181 -1.9772 39 1 7.3348 0.1909 -6.3753 40 1 4.0153 0.3760 -0.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840710621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:10 Heat of formation + Delta-G solvation = -47.204428 kcal Electronic energy + Delta-G solvation = -21925.480763 eV Core-core repulsion = 18705.815484 eV Total energy + Delta-G solvation = -3219.665279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.45337 -39.63152 -38.71116 -36.90390 -35.85296 -33.20845 -31.63382 -30.30007 -28.01541 -27.83041 -27.51555 -27.14700 -24.23577 -23.32074 -21.52467 -20.34762 -19.16064 -18.41864 -18.01931 -17.54749 -16.77194 -16.73790 -16.41128 -16.04630 -15.62237 -15.29052 -15.04577 -14.81790 -14.15288 -14.01353 -13.80375 -13.41928 -13.34941 -13.17562 -13.11509 -12.79594 -12.58063 -12.34884 -12.33904 -12.13750 -11.94222 -11.63393 -11.59043 -11.30276 -10.93112 -10.81576 -10.39301 -10.16297 -9.48271 -8.98783 -8.01763 -6.20192 -0.14879 0.30339 1.38723 1.39448 1.48300 1.52235 2.34495 2.42641 2.64820 3.19576 3.29858 3.60443 3.74077 3.76705 4.10050 4.23127 4.38068 4.39994 4.41884 4.49786 4.59168 4.71604 4.78529 4.86517 4.93589 4.95433 5.09724 5.20134 5.23907 5.29086 5.34179 5.39586 5.44963 5.62033 5.63669 5.66042 6.10660 6.23777 6.39154 6.43343 6.83916 6.96615 6.99603 7.47352 8.97153 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015408 B = 0.006038 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.750838 B = 4636.042127 C = 5693.731828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.343 6.343 3 C 0.100 3.900 4 C -0.174 4.174 5 C -0.111 4.111 6 C 0.101 3.899 7 O -0.496 6.496 8 C -0.114 4.114 9 C 0.175 3.825 10 N -0.515 5.515 11 C 0.046 3.954 12 C 0.069 3.931 13 C -0.108 4.108 14 C -0.109 4.109 15 C -0.528 4.528 16 H 0.043 0.957 17 C 0.023 3.977 18 N -0.904 5.904 19 Si 0.948 3.052 20 H -0.277 1.277 21 H -0.280 1.280 22 H -0.272 1.272 23 C -0.137 4.137 24 H 0.114 0.886 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.164 0.836 28 H 0.165 0.835 29 H 0.411 0.589 30 H 0.189 0.811 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.023 0.977 34 H 0.058 0.942 35 H 0.006 0.994 36 H 0.013 0.987 37 H 0.054 0.946 38 H 0.028 0.972 39 H 0.260 0.740 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.843 7.300 14.308 21.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.257 6.257 3 C 0.055 3.945 4 C -0.193 4.193 5 C -0.130 4.130 6 C 0.053 3.947 7 O -0.309 6.309 8 C -0.117 4.117 9 C -0.035 4.035 10 N -0.221 5.221 11 C -0.082 4.082 12 C 0.068 3.932 13 C -0.166 4.166 14 C -0.167 4.167 15 C -0.567 4.567 16 H 0.062 0.938 17 C -0.176 4.176 18 N -0.543 5.543 19 Si 0.774 3.226 20 H -0.203 1.203 21 H -0.205 1.205 22 H -0.197 1.197 23 C -0.157 4.157 24 H 0.132 0.868 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.181 0.819 28 H 0.183 0.817 29 H 0.271 0.729 30 H 0.206 0.794 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.026 0.974 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.686 6.594 13.398 19.594 hybrid contribution -1.218 -0.691 -0.430 1.465 sum -13.904 5.903 12.968 19.908 Atomic orbital electron populations 1.23383 0.76138 1.05600 1.02582 1.86101 1.23857 1.26852 1.88889 1.18977 0.91722 0.85518 0.98264 1.21506 1.01507 0.90851 1.05449 1.21507 0.93409 0.98798 0.99244 1.18426 0.90400 0.84173 1.01669 1.84808 1.80563 1.29807 1.35749 1.20235 0.96016 0.92620 1.02854 1.25147 0.88133 0.95104 0.95160 1.72027 1.39487 1.04745 1.05826 1.22806 0.97172 0.94282 0.93935 1.18093 0.92854 0.93056 0.89179 1.21530 0.96778 0.96738 1.01568 1.21530 0.98408 0.96856 0.99935 1.21362 1.12829 1.25803 0.96710 0.93823 1.25569 0.95708 0.97124 0.99222 1.69965 1.24836 1.42426 1.17067 0.85713 0.78565 0.79419 0.78898 1.20301 1.20539 1.19681 1.20692 0.92790 0.97698 1.04558 0.86758 0.90528 0.91830 0.81889 0.81728 0.72916 0.79432 0.92832 0.92991 0.95831 0.92314 0.97443 0.96755 0.92693 0.95296 0.93065 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -9.72 10.49 -93.44 -0.98 -10.70 16 3 C 0.10 2.92 6.68 22.44 0.15 3.07 16 4 C -0.17 -3.80 9.03 22.40 0.20 -3.60 16 5 C -0.11 -2.31 9.97 22.32 0.22 -2.09 16 6 C 0.10 2.52 6.72 22.82 0.15 2.67 16 7 O -0.50 -10.22 12.88 -91.12 -1.17 -11.39 16 8 C -0.11 -3.56 5.29 -20.05 -0.11 -3.67 16 9 C 0.17 5.74 10.69 87.46 0.94 6.67 16 10 N -0.52 -21.18 9.14 -340.85 -3.12 -24.30 16 11 C 0.05 2.17 3.35 86.38 0.29 2.46 16 12 C 0.07 3.67 0.57 -52.93 -0.03 3.64 16 13 C -0.11 -5.78 8.02 71.98 0.58 -5.20 16 14 C -0.11 -5.84 8.13 71.98 0.59 -5.26 16 15 C -0.53 -30.51 8.01 25.60 0.21 -30.30 16 16 H 0.04 2.53 7.74 -2.91 -0.02 2.50 16 17 C 0.02 1.30 5.14 84.65 0.43 1.73 16 18 N -0.90 -52.76 9.33 21.45 0.20 -52.56 16 19 Si 0.95 44.98 29.54 68.60 2.03 47.01 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 23 C -0.14 -4.65 7.28 22.63 0.16 -4.48 16 24 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.08 0.90 7.65 -2.39 -0.02 0.88 16 26 H 0.06 0.95 7.66 -2.39 -0.02 0.93 16 27 H 0.16 2.38 6.27 -2.91 -0.02 2.36 16 28 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 29 H 0.41 3.56 9.06 -74.05 -0.67 2.89 16 30 H 0.19 4.63 7.95 -2.91 -0.02 4.60 16 31 H 0.05 2.57 7.86 -2.39 -0.02 2.55 16 32 H 0.05 2.46 4.46 -2.39 -0.01 2.45 16 33 H 0.02 1.16 7.65 -2.39 -0.02 1.14 16 34 H 0.06 3.40 5.96 -2.39 -0.01 3.38 16 35 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.05 3.15 6.07 -2.39 -0.01 3.14 16 38 H 0.03 1.43 7.73 -2.39 -0.02 1.41 16 39 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 40 H 0.12 4.46 5.76 -2.91 -0.02 4.44 16 Total: -1.00 -72.34 324.00 2.24 -70.10 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.39 Total: 14.78 kcal Atomic # 6 Polarization: -37.84 SS G_CDS: 4.90 Total: -32.95 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -2.92 Total: -76.86 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -2.15 Total: -22.09 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -72.34 2.24 -70.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840710621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.896 kcal (2) G-P(sol) polarization free energy of solvation -72.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds