Wall clock time and date at job start Mon Mar 30 2020 01:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35996 * 117.00009 * 2 1 4 4 C 1.38529 * 120.00395 * 0.02562 * 3 2 1 5 5 C 1.38461 * 120.33703 * 179.97438 * 4 3 2 6 6 C 1.37828 * 120.34058 * 359.97273 * 5 4 3 7 7 C 1.39772 * 119.98958 * 0.02879 * 6 5 4 8 8 C 1.47394 * 120.16129 * 179.97438 * 7 6 5 9 9 N 1.29422 * 119.99705 * 179.72091 * 8 7 6 10 10 C 1.46499 * 120.00200 * 180.27822 * 9 8 7 11 11 C 1.52997 * 109.47446 * 115.00107 * 10 9 8 12 12 C 1.52998 * 109.47243 * 299.99914 * 11 10 9 13 13 C 1.53004 * 109.47221 * 60.00172 * 11 10 9 14 14 C 1.50708 * 109.47128 * 180.02562 * 11 10 9 15 15 H 1.07996 * 119.99670 * 359.97438 * 14 11 10 16 16 C 1.37879 * 119.99735 * 179.97438 * 14 11 10 17 17 N 1.31507 * 120.00219 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99597 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47098 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46917 * 120.00455 * 18 16 14 21 21 H 1.48501 * 109.46949 * 240.00134 * 18 16 14 22 22 C 1.39071 * 119.99837 * 180.23472 * 3 2 1 23 23 O 1.35799 * 120.17022 * 0.02562 * 22 3 2 24 24 H 1.09008 * 109.46716 * 299.99772 * 1 2 3 25 25 H 1.09001 * 109.47342 * 59.99700 * 1 2 3 26 26 H 1.08998 * 109.47668 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.82744 * 359.95547 * 4 3 2 28 28 H 1.07998 * 119.83089 * 179.97438 * 5 4 3 29 29 H 1.07998 * 120.00717 * 180.02562 * 6 5 4 30 30 H 1.08002 * 120.00524 * 0.02562 * 8 7 6 31 31 H 1.09000 * 109.47319 * 235.00318 * 10 9 8 32 32 H 1.08998 * 109.47147 * 354.99752 * 10 9 8 33 33 H 1.09007 * 109.46710 * 59.99691 * 12 11 10 34 34 H 1.09001 * 109.47319 * 179.97438 * 12 11 10 35 35 H 1.09000 * 109.47112 * 300.00497 * 12 11 10 36 36 H 1.09000 * 109.46942 * 60.00157 * 13 11 10 37 37 H 1.08999 * 109.46805 * 180.02562 * 13 11 10 38 38 H 1.08993 * 109.46613 * 300.00349 * 13 11 10 39 39 H 0.97001 * 120.00114 * 179.97438 * 17 16 14 40 40 H 0.96693 * 113.99697 * 270.27612 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2920 2.3736 0.0005 5 6 1.9135 3.6109 0.0011 6 6 3.2889 3.6992 0.0016 7 6 4.0637 2.5359 0.0011 8 6 5.5349 2.6259 0.0011 9 7 6.2492 1.5467 0.0061 10 6 7.7114 1.6360 0.0123 11 6 8.2520 1.0609 1.3229 12 6 7.6875 1.8576 2.5007 13 6 7.8302 -0.4044 1.4493 14 6 9.7563 1.1534 1.3294 15 1 10.2747 1.5795 0.4832 16 6 10.4704 0.6942 2.4158 17 7 9.8391 0.1750 3.4459 18 14 12.3349 0.8083 2.4236 19 1 12.7983 1.4269 1.1556 20 1 12.7750 1.6425 3.5706 21 1 12.9136 -0.5534 2.5511 22 6 3.4352 1.2845 -0.0049 23 8 4.1782 0.1478 -0.0103 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.2137 2.3139 0.0002 28 1 1.3173 4.5115 0.0011 29 1 3.7680 4.6671 0.0025 30 1 6.0168 3.5924 0.0020 31 1 8.1137 1.0685 -0.8269 32 1 8.0120 2.6799 -0.0778 33 1 6.5995 1.7911 2.4961 34 1 8.0723 1.4475 3.4345 35 1 7.9880 2.9014 2.4107 36 1 8.2325 -0.9720 0.6101 37 1 8.2150 -0.8140 2.3832 38 1 6.7423 -0.4709 1.4446 39 1 10.3415 -0.1484 4.2100 40 1 4.3930 -0.1858 0.8715 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840711008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:13 Heat of formation + Delta-G solvation = -31.972750 kcal Electronic energy + Delta-G solvation = -21489.411127 eV Core-core repulsion = 18270.406343 eV Total energy + Delta-G solvation = -3219.004784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.28837 -38.00198 -36.69775 -36.16499 -34.14667 -31.41801 -30.01758 -29.61615 -27.35677 -25.83306 -25.47013 -25.05240 -22.86397 -22.09300 -20.08338 -18.45466 -18.02316 -17.43917 -16.29772 -15.93964 -15.88509 -15.20405 -14.79729 -14.53110 -14.46157 -13.94930 -13.66032 -13.28154 -12.84964 -12.43811 -12.21359 -12.13615 -12.00853 -11.60361 -11.27563 -11.22056 -11.13907 -10.81671 -10.61657 -10.39275 -10.29745 -10.11705 -10.09228 -9.43396 -9.23542 -8.86347 -8.40430 -8.30288 -8.10559 -8.07725 -5.95110 -4.06139 0.97234 1.39997 2.90157 3.18641 3.28909 3.37277 3.40935 3.87140 4.39993 4.44362 4.64331 4.75195 4.95951 4.99350 5.19240 5.25442 5.30133 5.30765 5.34463 5.57035 5.92702 6.02852 6.17093 6.30412 6.43592 6.48327 6.53758 6.62957 6.77362 6.87100 7.09313 7.12630 7.25702 7.33927 7.47707 7.70486 7.76538 8.12467 8.16327 8.25736 8.41886 8.52691 8.94756 9.59128 11.05500 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034120 B = 0.003836 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.439971 B = 7298.197983 C = 7717.094001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.090 3.910 4 C -0.196 4.196 5 C -0.099 4.099 6 C -0.123 4.123 7 C -0.040 4.040 8 C 0.127 3.873 9 N -0.446 5.446 10 C 0.043 3.957 11 C 0.077 3.923 12 C -0.130 4.130 13 C -0.120 4.120 14 C -0.509 4.509 15 H 0.054 0.946 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.891 3.109 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.118 3.882 23 O -0.458 6.458 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.029 0.971 33 H 0.009 0.991 34 H 0.084 0.916 35 H 0.018 0.982 36 H 0.021 0.979 37 H 0.076 0.924 38 H 0.018 0.982 39 H 0.258 0.742 40 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.231 4.931 -4.790 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.221 6.221 3 C 0.044 3.956 4 C -0.215 4.215 5 C -0.117 4.117 6 C -0.143 4.143 7 C -0.041 4.041 8 C -0.084 4.084 9 N -0.153 5.153 10 C -0.085 4.085 11 C 0.077 3.923 12 C -0.188 4.188 13 C -0.178 4.178 14 C -0.548 4.548 15 H 0.072 0.928 16 C -0.135 4.135 17 N -0.522 5.522 18 Si 0.719 3.281 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.210 1.210 22 C 0.069 3.931 23 O -0.268 6.268 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.116 0.884 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.028 0.972 34 H 0.102 0.898 35 H 0.038 0.962 36 H 0.040 0.960 37 H 0.095 0.905 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -18.006 3.702 -5.220 19.110 hybrid contribution 1.190 1.052 0.533 1.676 sum -16.816 4.754 -4.687 18.093 Atomic orbital electron populations 1.23040 0.78975 1.03780 1.01035 1.86178 1.20758 1.26312 1.88818 1.19481 0.91800 0.84814 0.99497 1.21140 0.99764 0.92050 1.08578 1.20744 0.94370 0.96803 0.99763 1.21060 0.93390 0.97504 1.02355 1.19200 0.92730 0.91862 1.00339 1.23773 0.91293 0.94606 0.98700 1.71847 1.09387 1.30738 1.03373 1.22824 0.84401 0.99274 1.02049 1.18099 0.94083 0.92651 0.87511 1.21816 0.95705 0.97916 1.03322 1.21664 0.96590 0.97676 1.01831 1.21125 0.90599 1.40295 1.02744 0.92770 1.24882 0.98169 0.94975 0.95487 1.69840 1.34690 1.41064 1.06645 0.86559 0.85956 0.77690 0.77902 1.19886 1.21115 1.21022 1.17915 0.85689 0.87073 1.02450 1.84827 1.71142 1.37821 1.33005 0.92849 0.92865 0.88380 0.85479 0.85613 0.85207 0.88767 0.90419 0.95240 0.97229 0.89777 0.96243 0.95984 0.90500 0.96256 0.93145 0.75444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.10 10.28 -34.30 -0.35 -4.45 16 3 C 0.09 1.24 6.69 -39.17 -0.26 0.98 16 4 C -0.20 -2.17 9.03 -39.39 -0.36 -2.52 16 5 C -0.10 -1.03 10.02 -39.65 -0.40 -1.42 16 6 C -0.12 -1.47 9.78 -39.16 -0.38 -1.85 16 7 C -0.04 -0.61 5.88 -104.92 -0.62 -1.22 16 8 C 0.13 2.16 10.26 -14.84 -0.15 2.01 16 9 N -0.45 -8.85 6.85 -59.09 -0.40 -9.25 16 10 C 0.04 0.95 5.22 -4.04 -0.02 0.93 16 11 C 0.08 1.91 0.57 -155.66 -0.09 1.82 16 12 C -0.13 -3.16 8.08 37.16 0.30 -2.86 16 13 C -0.12 -2.97 8.09 37.16 0.30 -2.67 16 14 C -0.51 -13.79 8.01 -34.44 -0.28 -14.06 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 16 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 17 N -0.88 -24.51 9.35 55.43 0.52 -23.99 16 18 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.12 1.88 6.73 -38.60 -0.26 1.62 16 23 O -0.46 -8.07 11.16 -33.68 -0.38 -8.45 16 24 H 0.05 0.37 7.66 -51.92 -0.40 -0.03 16 25 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 26 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.13 1.06 6.27 -52.48 -0.33 0.73 16 28 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.10 1.45 7.76 -52.49 -0.41 1.04 16 31 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.03 0.62 7.69 -51.93 -0.40 0.23 16 33 H 0.01 0.20 7.45 -51.93 -0.39 -0.19 16 34 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 2.07 6.07 -51.93 -0.32 1.75 16 38 H 0.02 0.43 7.60 -51.93 -0.39 0.03 16 39 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 40 H 0.39 6.15 9.06 45.56 0.41 6.56 16 LS Contribution 329.86 15.07 4.97 4.97 Total: -1.00 -30.51 329.86 -6.98 -37.49 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.01 Total: 3.91 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -1.31 Total: -16.34 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.11 Total: -33.24 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.73 Total: -12.90 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.51 -6.98 -37.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840711008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.521 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds