Wall clock time and date at job start Mon Mar 30 2020 01:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35996 * 117.00009 * 2 1 4 4 C 1.38529 * 120.00395 * 0.02562 * 3 2 1 5 5 C 1.38461 * 120.33703 * 179.97438 * 4 3 2 6 6 C 1.37828 * 120.34058 * 359.97273 * 5 4 3 7 7 C 1.39772 * 119.98958 * 0.02879 * 6 5 4 8 8 C 1.47394 * 120.16129 * 179.97438 * 7 6 5 9 9 N 1.29422 * 119.99705 * 179.72091 * 8 7 6 10 10 C 1.46499 * 120.00200 * 180.27822 * 9 8 7 11 11 C 1.52997 * 109.47446 * 115.00107 * 10 9 8 12 12 C 1.52998 * 109.47243 * 299.99914 * 11 10 9 13 13 C 1.53004 * 109.47221 * 60.00172 * 11 10 9 14 14 C 1.50708 * 109.47128 * 180.02562 * 11 10 9 15 15 H 1.07996 * 119.99670 * 359.97438 * 14 11 10 16 16 C 1.37879 * 119.99735 * 179.97438 * 14 11 10 17 17 N 1.31507 * 120.00219 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99597 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47098 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46917 * 120.00455 * 18 16 14 21 21 H 1.48501 * 109.46949 * 240.00134 * 18 16 14 22 22 C 1.39071 * 119.99837 * 180.23472 * 3 2 1 23 23 O 1.35799 * 120.17022 * 0.02562 * 22 3 2 24 24 H 1.09008 * 109.46716 * 299.99772 * 1 2 3 25 25 H 1.09001 * 109.47342 * 59.99700 * 1 2 3 26 26 H 1.08998 * 109.47668 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.82744 * 359.95547 * 4 3 2 28 28 H 1.07998 * 119.83089 * 179.97438 * 5 4 3 29 29 H 1.07998 * 120.00717 * 180.02562 * 6 5 4 30 30 H 1.08002 * 120.00524 * 0.02562 * 8 7 6 31 31 H 1.09000 * 109.47319 * 235.00318 * 10 9 8 32 32 H 1.08998 * 109.47147 * 354.99752 * 10 9 8 33 33 H 1.09007 * 109.46710 * 59.99691 * 12 11 10 34 34 H 1.09001 * 109.47319 * 179.97438 * 12 11 10 35 35 H 1.09000 * 109.47112 * 300.00497 * 12 11 10 36 36 H 1.09000 * 109.46942 * 60.00157 * 13 11 10 37 37 H 1.08999 * 109.46805 * 180.02562 * 13 11 10 38 38 H 1.08993 * 109.46613 * 300.00349 * 13 11 10 39 39 H 0.97001 * 120.00114 * 179.97438 * 17 16 14 40 40 H 0.96693 * 113.99697 * 270.27612 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2920 2.3736 0.0005 5 6 1.9135 3.6109 0.0011 6 6 3.2889 3.6992 0.0016 7 6 4.0637 2.5359 0.0011 8 6 5.5349 2.6259 0.0011 9 7 6.2492 1.5467 0.0061 10 6 7.7114 1.6360 0.0123 11 6 8.2520 1.0609 1.3229 12 6 7.6875 1.8576 2.5007 13 6 7.8302 -0.4044 1.4493 14 6 9.7563 1.1534 1.3294 15 1 10.2747 1.5795 0.4832 16 6 10.4704 0.6942 2.4158 17 7 9.8391 0.1750 3.4459 18 14 12.3349 0.8083 2.4236 19 1 12.7983 1.4269 1.1556 20 1 12.7750 1.6425 3.5706 21 1 12.9136 -0.5534 2.5511 22 6 3.4352 1.2845 -0.0049 23 8 4.1782 0.1478 -0.0103 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.2137 2.3139 0.0002 28 1 1.3173 4.5115 0.0011 29 1 3.7680 4.6671 0.0025 30 1 6.0168 3.5924 0.0020 31 1 8.1137 1.0685 -0.8269 32 1 8.0120 2.6799 -0.0778 33 1 6.5995 1.7911 2.4961 34 1 8.0723 1.4475 3.4345 35 1 7.9880 2.9014 2.4107 36 1 8.2325 -0.9720 0.6101 37 1 8.2150 -0.8140 2.3832 38 1 6.7423 -0.4709 1.4446 39 1 10.3415 -0.1484 4.2100 40 1 4.3930 -0.1858 0.8715 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840711008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:13 Heat of formation + Delta-G solvation = -51.286424 kcal Electronic energy + Delta-G solvation = -21490.248631 eV Core-core repulsion = 18270.406343 eV Total energy + Delta-G solvation = -3219.842288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.25837 -39.13918 -38.30406 -37.26313 -35.77610 -33.22577 -31.27475 -30.56808 -28.17053 -27.60802 -27.38051 -26.91575 -24.08347 -23.10498 -21.38482 -20.20670 -19.13532 -18.43976 -17.96138 -17.30470 -16.80636 -16.74683 -16.11354 -15.79048 -15.77541 -15.20641 -14.95711 -14.71208 -14.31226 -14.13785 -13.56182 -13.31984 -13.16394 -12.99762 -12.94842 -12.71738 -12.52007 -12.35135 -12.17999 -12.12329 -12.06372 -11.73892 -11.49367 -11.29235 -10.91524 -10.72929 -10.39518 -9.91263 -9.33413 -9.03214 -8.00973 -6.19072 -0.09644 0.44843 1.40403 1.43241 1.53218 1.68785 2.36918 2.44224 2.83615 3.21180 3.31351 3.45629 3.92071 4.13172 4.21635 4.34240 4.38970 4.43818 4.46788 4.62597 4.63815 4.74025 4.75971 4.86276 4.94563 5.05198 5.14564 5.19692 5.34883 5.35763 5.41033 5.46857 5.55738 5.64574 5.67842 5.80065 6.11563 6.23782 6.39103 6.43335 6.86016 6.99305 7.07757 7.48909 8.97756 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034120 B = 0.003836 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.439971 B = 7298.197983 C = 7717.094001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.076 3.924 4 C -0.183 4.183 5 C -0.089 4.089 6 C -0.116 4.116 7 C -0.069 4.069 8 C 0.146 3.854 9 N -0.483 5.483 10 C 0.056 3.944 11 C 0.068 3.932 12 C -0.113 4.113 13 C -0.105 4.105 14 C -0.529 4.529 15 H 0.048 0.952 16 C 0.023 3.977 17 N -0.904 5.904 18 Si 0.950 3.050 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.283 1.283 22 C 0.084 3.916 23 O -0.480 6.480 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.160 0.840 28 H 0.168 0.832 29 H 0.156 0.844 30 H 0.113 0.887 31 H 0.062 0.938 32 H 0.030 0.970 33 H 0.020 0.980 34 H 0.057 0.943 35 H 0.018 0.982 36 H 0.010 0.990 37 H 0.052 0.948 38 H 0.030 0.970 39 H 0.259 0.741 40 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.438 6.971 -5.164 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.030 3.970 4 C -0.202 4.202 5 C -0.106 4.106 6 C -0.136 4.136 7 C -0.070 4.070 8 C -0.064 4.064 9 N -0.190 5.190 10 C -0.073 4.073 11 C 0.068 3.932 12 C -0.170 4.170 13 C -0.163 4.163 14 C -0.568 4.568 15 H 0.066 0.934 16 C -0.176 4.176 17 N -0.543 5.543 18 Si 0.776 3.224 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.209 1.209 22 C 0.035 3.965 23 O -0.289 6.289 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.130 0.870 27 H 0.178 0.822 28 H 0.185 0.815 29 H 0.174 0.826 30 H 0.130 0.870 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.030 0.970 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -20.230 5.747 -5.601 21.764 hybrid contribution 1.623 0.489 0.630 1.808 sum -18.607 6.236 -4.972 20.245 Atomic orbital electron populations 1.23361 0.76484 1.05379 1.02466 1.86140 1.23428 1.26598 1.88889 1.19603 0.91329 0.86067 0.99986 1.21586 1.01335 0.91241 1.06057 1.21245 0.93976 0.98044 0.97375 1.21420 0.94161 0.97327 1.00673 1.19282 0.91751 0.92968 1.02986 1.24279 0.92490 0.94693 0.94944 1.71917 1.07583 1.31922 1.07617 1.22465 0.86376 0.98646 0.99819 1.18107 0.93222 0.92574 0.89329 1.21588 0.96160 0.97467 1.01822 1.21480 0.97108 0.97847 0.99870 1.21425 0.92172 1.40525 1.02684 0.93406 1.25567 1.02110 0.94732 0.95226 1.69970 1.35991 1.41356 1.06947 0.85633 0.81196 0.77595 0.77939 1.19539 1.20616 1.20857 1.18318 0.86884 0.86819 1.04443 1.84801 1.71922 1.39010 1.33214 0.91243 0.91372 0.86983 0.82229 0.81476 0.82608 0.87017 0.91936 0.95130 0.96109 0.92375 0.96255 0.97037 0.92914 0.95060 0.93166 0.75714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -8.66 10.28 -79.56 -0.82 -9.48 16 3 C 0.08 1.99 6.69 22.54 0.15 2.14 16 4 C -0.18 -3.36 9.03 22.39 0.20 -3.15 16 5 C -0.09 -1.43 10.02 22.23 0.22 -1.20 16 6 C -0.12 -2.36 9.78 22.54 0.22 -2.14 16 7 C -0.07 -1.99 5.88 -20.06 -0.12 -2.11 16 8 C 0.15 4.88 10.26 87.46 0.90 5.78 16 9 N -0.48 -19.44 6.85 -340.86 -2.34 -21.78 16 10 C 0.06 2.51 5.22 86.38 0.45 2.96 16 11 C 0.07 3.45 0.57 -52.93 -0.03 3.42 16 12 C -0.11 -5.56 8.08 71.98 0.58 -4.98 16 13 C -0.11 -5.40 8.09 71.98 0.58 -4.82 16 14 C -0.53 -29.25 8.01 25.60 0.21 -29.05 16 15 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 16 C 0.02 1.26 5.15 84.66 0.44 1.69 16 17 N -0.90 -51.14 9.35 21.45 0.20 -50.94 16 18 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 C 0.08 2.66 6.73 22.91 0.15 2.82 16 23 O -0.48 -17.61 11.16 -77.36 -0.86 -18.47 16 24 H 0.07 0.74 7.66 -2.38 -0.02 0.72 16 25 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 26 H 0.11 1.21 8.14 -2.39 -0.02 1.20 16 27 H 0.16 1.84 6.27 -2.91 -0.02 1.82 16 28 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.11 3.26 7.76 -2.91 -0.02 3.24 16 31 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.03 1.31 7.69 -2.39 -0.02 1.29 16 33 H 0.02 0.93 7.45 -2.38 -0.02 0.91 16 34 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.05 2.93 6.07 -2.39 -0.01 2.92 16 38 H 0.03 1.47 7.60 -2.39 -0.02 1.45 16 39 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 40 H 0.39 13.13 9.06 -74.06 -0.67 12.46 16 Total: -1.00 -67.77 329.86 3.65 -64.12 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.37 Total: 18.05 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 5.07 Total: -27.29 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -2.14 Total: -72.71 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -1.68 Total: -27.95 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -67.77 3.65 -64.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840711008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.832 kcal (2) G-P(sol) polarization free energy of solvation -67.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds