Wall clock time and date at job start Mon Mar 30 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35999 * 116.99757 * 2 1 4 4 C 1.38528 * 120.00155 * 359.97438 * 3 2 1 5 5 C 1.38464 * 120.33548 * 180.02562 * 4 3 2 6 6 C 1.37830 * 120.33652 * 359.97438 * 5 4 3 7 7 C 1.39767 * 119.99872 * 359.97438 * 6 5 4 8 8 C 1.47393 * 120.16999 * 180.02562 * 7 6 5 9 9 N 1.29421 * 119.99691 * 29.46143 * 8 7 6 10 10 C 1.46497 * 120.00231 * 13.68660 * 9 8 7 11 11 C 1.53001 * 109.47027 * 123.72578 * 10 9 8 12 12 C 1.52995 * 109.47350 * 300.00242 * 11 10 9 13 13 C 1.53004 * 109.47093 * 60.00412 * 11 10 9 14 14 C 1.50706 * 109.47214 * 179.97438 * 11 10 9 15 15 H 1.08002 * 119.99550 * 0.02562 * 14 11 10 16 16 C 1.37871 * 119.99941 * 179.97438 * 14 11 10 17 17 N 1.31516 * 120.00451 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99744 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47319 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47153 * 120.00261 * 18 16 14 21 21 H 1.48498 * 109.47032 * 239.99900 * 18 16 14 22 22 C 1.39066 * 120.00164 * 180.23158 * 3 2 1 23 23 O 1.35801 * 120.16675 * 0.03920 * 22 3 2 24 24 H 1.09003 * 109.47034 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47360 * 300.00334 * 1 2 3 26 26 H 1.08992 * 109.47129 * 60.00937 * 1 2 3 27 27 H 1.07998 * 119.83410 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.83233 * 179.97438 * 5 4 3 29 29 H 1.08009 * 120.00099 * 180.02562 * 6 5 4 30 30 H 1.07991 * 120.00132 * 209.46233 * 8 7 6 31 31 H 1.09008 * 109.47287 * 243.72478 * 10 9 8 32 32 H 1.08997 * 109.47258 * 3.72583 * 10 9 8 33 33 H 1.08996 * 109.47377 * 59.99741 * 12 11 10 34 34 H 1.08997 * 109.47510 * 180.02562 * 12 11 10 35 35 H 1.09006 * 109.46918 * 299.99820 * 12 11 10 36 36 H 1.08995 * 109.47324 * 59.99725 * 13 11 10 37 37 H 1.08997 * 109.46921 * 180.02562 * 13 11 10 38 38 H 1.09005 * 109.46624 * 299.99400 * 13 11 10 39 39 H 0.96997 * 120.00535 * 180.02562 * 17 16 14 40 40 H 0.96706 * 113.99807 * 265.26591 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2919 2.3736 -0.0005 5 6 1.9133 3.6110 -0.0011 6 6 3.2888 3.6993 -0.0005 7 6 4.0637 2.5361 0.0011 8 6 5.5348 2.6261 0.0022 9 7 6.1206 3.6402 0.5531 10 6 5.3624 4.5376 1.4282 11 6 6.0436 4.6116 2.7962 12 6 6.0927 3.2145 3.4178 13 6 7.4676 5.1456 2.6287 14 6 5.2640 5.5354 3.6963 15 1 4.3716 6.0207 3.3294 16 6 5.6893 5.7600 4.9884 17 7 6.7756 5.1685 5.4354 18 14 4.7225 6.9044 6.1043 19 1 3.5490 7.4390 5.3680 20 1 4.2573 6.1547 7.2988 21 1 5.5925 8.0287 6.5335 22 6 3.4352 1.2847 -0.0049 23 8 4.1782 0.1480 -0.0104 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5136 -0.8900 27 1 0.2136 2.3139 -0.0014 28 1 1.3171 4.5115 -0.0019 29 1 3.7678 4.6673 -0.0006 30 1 6.1239 1.8459 -0.4566 31 1 5.3275 5.5331 0.9854 32 1 4.3479 4.1573 1.5476 33 1 6.6568 2.5467 2.7667 34 1 6.5775 3.2672 4.3926 35 1 5.0781 2.8341 3.5372 36 1 7.4326 6.1410 2.1859 37 1 7.9530 5.1979 3.6032 38 1 8.0317 4.4778 1.9776 39 1 7.0746 5.3262 6.3446 40 1 4.4576 -0.1436 0.8683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840711010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:16 Heat of formation + Delta-G solvation = -24.491948 kcal Electronic energy + Delta-G solvation = -21831.186524 eV Core-core repulsion = 18612.506132 eV Total energy + Delta-G solvation = -3218.680392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46219 -38.36436 -37.06545 -36.08024 -34.29104 -31.24212 -29.80668 -29.61818 -27.54285 -26.07014 -25.48788 -25.08442 -22.88061 -22.29873 -20.11104 -18.87579 -17.85579 -17.25265 -16.60886 -16.10758 -15.80699 -15.29337 -14.97531 -14.62367 -14.27234 -14.17721 -13.83832 -13.43135 -12.73143 -12.38305 -12.37425 -12.19812 -11.91340 -11.54382 -11.31184 -11.17155 -11.10928 -10.85698 -10.68144 -10.61925 -10.34166 -10.12181 -9.96193 -9.40389 -9.25833 -8.93148 -8.55140 -8.31665 -8.21348 -7.90375 -5.94856 -4.05960 0.94996 1.38782 2.74895 3.16048 3.27609 3.36031 3.38932 3.72683 4.26022 4.41305 4.73649 4.85855 4.98482 4.99409 5.09691 5.19498 5.28351 5.30764 5.32944 5.48277 5.80366 6.10309 6.17626 6.21011 6.38689 6.44344 6.63009 6.65311 6.77899 6.89251 7.09783 7.16724 7.17457 7.36295 7.48312 7.72325 7.76312 7.78637 8.13853 8.27199 8.35724 8.50986 8.94964 9.59115 11.05817 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.004960 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.929263 B = 5643.725453 C = 6239.089276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.095 3.905 4 C -0.190 4.190 5 C -0.093 4.093 6 C -0.116 4.116 7 C -0.090 4.090 8 C 0.146 3.854 9 N -0.470 5.470 10 C 0.025 3.975 11 C 0.080 3.920 12 C -0.127 4.127 13 C -0.124 4.124 14 C -0.507 4.507 15 H 0.053 0.947 16 C 0.066 3.934 17 N -0.883 5.883 18 Si 0.889 3.111 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.099 3.901 23 O -0.483 6.483 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.137 0.863 30 H 0.156 0.844 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.012 0.988 34 H 0.082 0.918 35 H 0.016 0.984 36 H 0.018 0.982 37 H 0.077 0.923 38 H 0.020 0.980 39 H 0.258 0.742 40 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.635 -8.075 -10.172 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.050 3.950 4 C -0.210 4.210 5 C -0.111 4.111 6 C -0.136 4.136 7 C -0.093 4.093 8 C -0.065 4.065 9 N -0.175 5.175 10 C -0.103 4.103 11 C 0.079 3.921 12 C -0.185 4.185 13 C -0.181 4.181 14 C -0.546 4.546 15 H 0.071 0.929 16 C -0.135 4.135 17 N -0.522 5.522 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.210 1.210 22 C 0.051 3.949 23 O -0.292 6.292 24 H 0.116 0.884 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.154 0.846 30 H 0.173 0.827 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.101 0.899 35 H 0.035 0.965 36 H 0.037 0.963 37 H 0.096 0.904 38 H 0.039 0.961 39 H 0.068 0.932 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -9.636 -7.690 -10.458 16.166 hybrid contribution -1.704 0.645 1.272 2.222 sum -11.340 -7.045 -9.186 16.205 Atomic orbital electron populations 1.23051 0.78845 1.03776 1.01246 1.86145 1.20894 1.26297 1.88913 1.19292 0.91515 0.84808 0.99412 1.21164 0.99883 0.91950 1.07971 1.20851 0.94429 0.97053 0.98743 1.21437 0.93681 0.98244 1.00205 1.20331 0.96440 0.91878 1.00649 1.24601 0.88354 0.95424 0.98134 1.72085 1.39690 1.02691 1.03060 1.23270 0.96685 0.95109 0.95229 1.18062 0.93134 0.93655 0.87259 1.21770 0.97975 0.96279 1.02488 1.21694 0.98120 0.97048 1.01271 1.21102 1.10087 1.26646 0.96768 0.92880 1.24875 0.94983 0.95837 0.97801 1.69847 1.22769 1.42984 1.16573 0.86585 0.80095 0.80819 0.80756 1.19925 1.21113 1.21027 1.17756 0.85992 0.85934 1.05248 1.84760 1.70825 1.39703 1.33939 0.88355 0.92693 0.92795 0.85252 0.85341 0.84582 0.82669 0.91152 0.92520 0.96938 0.89924 0.96499 0.96266 0.90444 0.96066 0.93152 0.75533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.99 10.28 -34.31 -0.35 -4.34 16 3 C 0.10 1.33 6.69 -39.17 -0.26 1.07 16 4 C -0.19 -2.37 9.03 -39.39 -0.36 -2.73 16 5 C -0.09 -1.22 10.02 -39.65 -0.40 -1.62 16 6 C -0.12 -1.78 7.35 -39.16 -0.29 -2.06 16 7 C -0.09 -1.42 5.28 -104.93 -0.55 -1.97 16 8 C 0.15 2.41 10.69 -14.84 -0.16 2.25 16 9 N -0.47 -9.17 9.05 -59.09 -0.53 -9.70 16 10 C 0.02 0.53 3.35 -4.04 -0.01 0.52 16 11 C 0.08 1.97 0.57 -155.66 -0.09 1.88 16 12 C -0.13 -3.13 8.09 37.15 0.30 -2.83 16 13 C -0.12 -3.10 8.09 37.16 0.30 -2.80 16 14 C -0.51 -13.63 8.01 -34.44 -0.28 -13.91 16 15 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 16 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 17 N -0.88 -24.54 9.35 55.43 0.52 -24.02 16 18 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.10 1.47 6.73 -38.60 -0.26 1.21 16 23 O -0.48 -6.59 12.66 -33.69 -0.43 -7.02 16 24 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 27 H 0.13 1.24 6.27 -52.49 -0.33 0.91 16 28 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 29 H 0.14 2.16 5.75 -52.48 -0.30 1.85 16 30 H 0.16 2.20 7.95 -52.49 -0.42 1.78 16 31 H 0.07 1.50 7.86 -51.92 -0.41 1.09 16 32 H 0.06 1.18 4.47 -51.93 -0.23 0.95 16 33 H 0.01 0.27 7.60 -51.93 -0.39 -0.12 16 34 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 2.10 6.07 -51.93 -0.32 1.79 16 38 H 0.02 0.49 7.60 -51.93 -0.39 0.10 16 39 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.39 4.00 9.06 45.56 0.41 4.41 16 LS Contribution 323.64 15.07 4.88 4.88 Total: -1.00 -30.73 323.64 -6.82 -37.54 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -4.72 Total: 4.76 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -1.15 Total: -18.08 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: -0.02 Total: -33.72 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.78 Total: -11.36 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.73 -6.82 -37.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840711010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.050 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds