Wall clock time and date at job start Mon Mar 30 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35999 * 116.99757 * 2 1 4 4 C 1.38528 * 120.00155 * 359.97438 * 3 2 1 5 5 C 1.38464 * 120.33548 * 180.02562 * 4 3 2 6 6 C 1.37830 * 120.33652 * 359.97438 * 5 4 3 7 7 C 1.39767 * 119.99872 * 359.97438 * 6 5 4 8 8 C 1.47393 * 120.16999 * 180.02562 * 7 6 5 9 9 N 1.29421 * 119.99691 * 29.46143 * 8 7 6 10 10 C 1.46497 * 120.00231 * 13.68660 * 9 8 7 11 11 C 1.53001 * 109.47027 * 123.72578 * 10 9 8 12 12 C 1.52995 * 109.47350 * 300.00242 * 11 10 9 13 13 C 1.53004 * 109.47093 * 60.00412 * 11 10 9 14 14 C 1.50706 * 109.47214 * 179.97438 * 11 10 9 15 15 H 1.08002 * 119.99550 * 0.02562 * 14 11 10 16 16 C 1.37871 * 119.99941 * 179.97438 * 14 11 10 17 17 N 1.31516 * 120.00451 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99744 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47319 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47153 * 120.00261 * 18 16 14 21 21 H 1.48498 * 109.47032 * 239.99900 * 18 16 14 22 22 C 1.39066 * 120.00164 * 180.23158 * 3 2 1 23 23 O 1.35801 * 120.16675 * 0.03920 * 22 3 2 24 24 H 1.09003 * 109.47034 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47360 * 300.00334 * 1 2 3 26 26 H 1.08992 * 109.47129 * 60.00937 * 1 2 3 27 27 H 1.07998 * 119.83410 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.83233 * 179.97438 * 5 4 3 29 29 H 1.08009 * 120.00099 * 180.02562 * 6 5 4 30 30 H 1.07991 * 120.00132 * 209.46233 * 8 7 6 31 31 H 1.09008 * 109.47287 * 243.72478 * 10 9 8 32 32 H 1.08997 * 109.47258 * 3.72583 * 10 9 8 33 33 H 1.08996 * 109.47377 * 59.99741 * 12 11 10 34 34 H 1.08997 * 109.47510 * 180.02562 * 12 11 10 35 35 H 1.09006 * 109.46918 * 299.99820 * 12 11 10 36 36 H 1.08995 * 109.47324 * 59.99725 * 13 11 10 37 37 H 1.08997 * 109.46921 * 180.02562 * 13 11 10 38 38 H 1.09005 * 109.46624 * 299.99400 * 13 11 10 39 39 H 0.96997 * 120.00535 * 180.02562 * 17 16 14 40 40 H 0.96706 * 113.99807 * 265.26591 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2919 2.3736 -0.0005 5 6 1.9133 3.6110 -0.0011 6 6 3.2888 3.6993 -0.0005 7 6 4.0637 2.5361 0.0011 8 6 5.5348 2.6261 0.0022 9 7 6.1206 3.6402 0.5531 10 6 5.3624 4.5376 1.4282 11 6 6.0436 4.6116 2.7962 12 6 6.0927 3.2145 3.4178 13 6 7.4676 5.1456 2.6287 14 6 5.2640 5.5354 3.6963 15 1 4.3716 6.0207 3.3294 16 6 5.6893 5.7600 4.9884 17 7 6.7756 5.1685 5.4354 18 14 4.7225 6.9044 6.1043 19 1 3.5490 7.4390 5.3680 20 1 4.2573 6.1547 7.2988 21 1 5.5925 8.0287 6.5335 22 6 3.4352 1.2847 -0.0049 23 8 4.1782 0.1480 -0.0104 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5136 -0.8900 27 1 0.2136 2.3139 -0.0014 28 1 1.3171 4.5115 -0.0019 29 1 3.7678 4.6673 -0.0006 30 1 6.1239 1.8459 -0.4566 31 1 5.3275 5.5331 0.9854 32 1 4.3479 4.1573 1.5476 33 1 6.6568 2.5467 2.7667 34 1 6.5775 3.2672 4.3926 35 1 5.0781 2.8341 3.5372 36 1 7.4326 6.1410 2.1859 37 1 7.9530 5.1979 3.6032 38 1 8.0317 4.4778 1.9776 39 1 7.0746 5.3262 6.3446 40 1 4.4576 -0.1436 0.8683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840711010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:16 Heat of formation + Delta-G solvation = -44.728588 kcal Electronic energy + Delta-G solvation = -21832.064050 eV Core-core repulsion = 18612.506132 eV Total energy + Delta-G solvation = -3219.557919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.50372 -39.52324 -38.36064 -37.37374 -35.87313 -33.15427 -30.90220 -30.73484 -28.49320 -27.61235 -27.43235 -27.06839 -24.07206 -23.41480 -21.50725 -20.33372 -19.05900 -18.39347 -18.00132 -17.51894 -16.99400 -16.71516 -16.23459 -16.02325 -15.60884 -15.35612 -15.05835 -14.96771 -14.26565 -14.05568 -13.56027 -13.35466 -13.23692 -13.14655 -12.96980 -12.76423 -12.52357 -12.34678 -12.17332 -12.11052 -11.99516 -11.76990 -11.69029 -11.26162 -10.91822 -10.77268 -10.37737 -10.01031 -9.45423 -9.06151 -7.99196 -6.16980 -0.17676 0.31688 1.40754 1.43115 1.48564 1.53901 2.29853 2.45019 2.64050 3.23168 3.24030 3.61952 3.73763 3.90054 4.13257 4.16141 4.40263 4.41837 4.42684 4.55100 4.62490 4.73857 4.79280 4.81617 4.95430 5.04058 5.13296 5.14099 5.21350 5.33409 5.37839 5.47342 5.54867 5.60605 5.66680 5.69397 6.12881 6.26779 6.28058 6.45368 6.82636 6.87219 6.99564 7.50887 8.99873 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.004960 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.929263 B = 5643.725453 C = 6239.089276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.088 3.912 4 C -0.180 4.180 5 C -0.094 4.094 6 C -0.132 4.132 7 C -0.114 4.114 8 C 0.172 3.828 9 N -0.508 5.508 10 C 0.042 3.958 11 C 0.068 3.932 12 C -0.111 4.111 13 C -0.111 4.111 14 C -0.524 4.524 15 H 0.050 0.950 16 C 0.022 3.978 17 N -0.905 5.905 18 Si 0.948 3.052 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.091 3.909 23 O -0.489 6.489 24 H 0.119 0.881 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.162 0.838 28 H 0.153 0.847 29 H 0.125 0.875 30 H 0.179 0.821 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.022 0.978 34 H 0.055 0.945 35 H 0.013 0.987 36 H 0.013 0.987 37 H 0.052 0.948 38 H 0.027 0.973 39 H 0.258 0.742 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.851 -8.748 -10.801 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.042 3.958 4 C -0.199 4.199 5 C -0.112 4.112 6 C -0.152 4.152 7 C -0.117 4.117 8 C -0.039 4.039 9 N -0.214 5.214 10 C -0.086 4.086 11 C 0.067 3.933 12 C -0.169 4.169 13 C -0.168 4.168 14 C -0.562 4.562 15 H 0.068 0.932 16 C -0.177 4.177 17 N -0.544 5.544 18 Si 0.774 3.226 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.209 1.209 22 C 0.044 3.956 23 O -0.300 6.300 24 H 0.137 0.863 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.180 0.820 28 H 0.171 0.829 29 H 0.142 0.858 30 H 0.195 0.805 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.032 0.968 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -11.859 -8.374 -11.090 18.269 hybrid contribution -1.124 0.703 1.381 1.914 sum -12.982 -7.671 -9.709 17.935 Atomic orbital electron populations 1.23393 0.76464 1.05680 1.02374 1.86127 1.23371 1.25811 1.88694 1.19436 0.91445 0.85824 0.99121 1.21528 1.01495 0.91011 1.05879 1.21158 0.93744 0.98507 0.97765 1.21485 0.94882 0.97630 1.01234 1.20308 0.95963 0.92668 1.02764 1.25016 0.89369 0.94128 0.95392 1.72085 1.39665 1.04200 1.05439 1.22879 0.96529 0.95414 0.93798 1.18113 0.92828 0.93102 0.89257 1.21554 0.97476 0.96668 1.01155 1.21533 0.98603 0.96945 0.99766 1.21395 1.10227 1.27126 0.97472 0.93221 1.25569 0.95847 0.97193 0.99117 1.69983 1.23819 1.43895 1.16746 0.85662 0.78963 0.78985 0.78944 1.19283 1.20853 1.20911 1.17858 0.86830 0.85777 1.05180 1.84715 1.70827 1.39285 1.35200 0.86294 0.91728 0.91358 0.82033 0.82922 0.85757 0.80461 0.92175 0.92177 0.95865 0.92569 0.96787 0.96795 0.92906 0.95365 0.93250 0.74000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -7.59 10.28 -79.60 -0.82 -8.41 16 3 C 0.09 2.26 6.69 22.54 0.15 2.41 16 4 C -0.18 -3.95 9.03 22.39 0.20 -3.75 16 5 C -0.09 -2.27 10.02 22.23 0.22 -2.04 16 6 C -0.13 -3.94 7.35 22.54 0.17 -3.78 16 7 C -0.11 -3.49 5.28 -20.06 -0.11 -3.59 16 8 C 0.17 5.51 10.69 87.46 0.94 6.45 16 9 N -0.51 -19.72 9.05 -340.85 -3.09 -22.81 16 10 C 0.04 1.80 3.35 86.38 0.29 2.09 16 11 C 0.07 3.38 0.57 -52.93 -0.03 3.35 16 12 C -0.11 -5.50 8.09 71.98 0.58 -4.91 16 13 C -0.11 -5.66 8.09 71.98 0.58 -5.07 16 14 C -0.52 -28.36 8.01 25.60 0.21 -28.16 16 15 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 16 C 0.02 1.18 5.15 84.65 0.44 1.62 16 17 N -0.91 -51.06 9.35 21.45 0.20 -50.86 16 18 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 C 0.09 2.60 6.73 22.91 0.15 2.75 16 23 O -0.49 -12.62 12.66 -77.39 -0.98 -13.60 16 24 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 26 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 27 H 0.16 2.42 6.27 -2.91 -0.02 2.40 16 28 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.12 3.95 5.75 -2.91 -0.02 3.93 16 30 H 0.18 4.76 7.95 -2.92 -0.02 4.73 16 31 H 0.06 2.61 7.86 -2.38 -0.02 2.60 16 32 H 0.06 2.51 4.47 -2.39 -0.01 2.50 16 33 H 0.02 1.05 7.60 -2.39 -0.02 1.03 16 34 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 35 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.05 2.94 6.07 -2.39 -0.01 2.92 16 38 H 0.03 1.34 7.60 -2.38 -0.02 1.33 16 39 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 40 H 0.40 7.73 9.06 -74.05 -0.67 7.06 16 Total: -1.00 -65.69 323.64 2.63 -63.06 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.39 Total: 18.81 kcal Atomic # 6 Polarization: -36.24 SS G_CDS: 4.90 Total: -31.33 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -2.88 Total: -73.67 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -1.80 Total: -22.01 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -65.69 2.63 -63.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840711010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.329 kcal (2) G-P(sol) polarization free energy of solvation -65.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds