Wall clock time and date at job start Mon Mar 30 2020 01:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34776 * 120.00183 * 2 1 4 4 O 1.21585 * 120.00050 * 184.78131 * 3 2 1 5 5 C 1.47532 * 119.99679 * 4.78727 * 3 2 1 6 6 C 1.39661 * 120.20223 * 326.34015 * 5 3 2 7 7 C 1.37825 * 119.92187 * 180.02562 * 6 5 3 8 8 C 1.38569 * 120.32671 * 359.97438 * 7 6 5 9 9 C 1.38034 * 120.40003 * 0.02562 * 8 7 6 10 10 C 1.38831 * 120.06872 * 0.02562 * 9 8 7 11 11 O 1.35518 * 120.16013 * 179.97438 * 10 9 8 12 12 C 1.34815 * 117.00147 * 5.93628 * 11 10 9 13 13 H 1.07997 * 119.99694 * 4.97157 * 12 11 10 14 14 C 1.38691 * 120.00205 * 184.96945 * 12 11 10 15 15 N 1.31527 * 120.00289 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00157 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.47344 * 89.99928 * 16 14 12 18 18 H 1.48503 * 109.47220 * 210.00313 * 16 14 12 19 19 H 1.48497 * 109.47182 * 329.99740 * 16 14 12 20 20 C 1.46501 * 119.99839 * 180.02562 * 2 1 3 21 21 C 1.52997 * 109.47010 * 175.99113 * 20 2 1 22 22 C 1.53011 * 109.47113 * 295.98772 * 20 2 1 23 23 C 1.52998 * 109.47004 * 55.98646 * 20 2 1 24 24 H 1.08993 * 109.46973 * 95.68456 * 1 2 3 25 25 H 1.09001 * 109.47178 * 215.68861 * 1 2 3 26 26 H 1.08998 * 109.46771 * 335.68332 * 1 2 3 27 27 H 1.08007 * 120.03656 * 359.97438 * 6 5 3 28 28 H 1.08001 * 119.83565 * 179.97438 * 7 6 5 29 29 H 1.07999 * 119.80487 * 179.74323 * 8 7 6 30 30 H 1.08000 * 119.96397 * 180.02562 * 9 8 7 31 31 H 0.96999 * 120.00215 * 179.97438 * 15 14 12 32 32 H 1.08990 * 109.47434 * 59.99622 * 21 20 2 33 33 H 1.09001 * 109.46729 * 180.02562 * 21 20 2 34 34 H 1.08998 * 109.46743 * 299.99396 * 21 20 2 35 35 H 1.08999 * 109.46651 * 59.99611 * 22 20 2 36 36 H 1.08996 * 109.46897 * 180.02562 * 22 20 2 37 37 H 1.08997 * 109.46568 * 300.00098 * 22 20 2 38 38 H 1.08998 * 109.47483 * 60.00154 * 23 20 2 39 39 H 1.09010 * 109.46791 * 180.02562 * 23 20 2 40 40 H 1.08999 * 109.47200 * 299.99693 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1690 -0.0878 5 6 1.4052 2.4426 0.1066 6 6 0.1388 2.5747 -0.4673 7 6 -0.5414 3.7690 -0.3647 8 6 0.0247 4.8411 0.3063 9 6 1.2754 4.7254 0.8786 10 6 1.9757 3.5303 0.7843 11 8 3.2040 3.4148 1.3450 12 6 3.6390 4.4541 2.0853 13 1 2.9854 5.2923 2.2759 14 6 4.9260 4.4467 2.6022 15 7 5.3507 5.4609 3.3241 16 14 6.0569 2.9971 2.2720 17 1 6.8256 3.2428 1.0255 18 1 6.9974 2.8338 3.4096 19 1 5.2467 1.7621 2.1185 20 6 2.1975 -1.2688 -0.0006 21 6 3.6987 -0.9909 -0.1013 22 6 1.9051 -2.0271 1.2958 23 6 1.7537 -2.1133 -1.1966 24 1 -0.3633 -0.1018 -1.0226 25 1 -0.3633 -0.8347 0.5995 26 1 -0.3633 0.9365 0.4232 27 1 -0.3066 1.7421 -0.9918 28 1 -1.5204 3.8697 -0.8094 29 1 -0.5140 5.7744 0.3781 30 1 1.7097 5.5654 1.4003 31 1 6.2506 5.4555 3.6859 32 1 4.0148 -0.3892 0.7507 33 1 4.2436 -1.9349 -0.1022 34 1 3.9070 -0.4508 -1.0248 35 1 0.8356 -2.2249 1.3676 36 1 2.4504 -2.9708 1.2956 37 1 2.2213 -1.4253 2.1479 38 1 1.9620 -1.5732 -2.1202 39 1 2.2984 -3.0575 -1.1968 40 1 0.6842 -2.3113 -1.1248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843712681.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:51 Heat of formation + Delta-G solvation = -21.532250 kcal Electronic energy + Delta-G solvation = -22574.389392 eV Core-core repulsion = 19355.837342 eV Total energy + Delta-G solvation = -3218.552050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.82530 -40.44985 -38.30780 -37.49452 -34.65972 -34.53449 -31.51086 -30.86870 -28.71699 -28.20638 -27.33556 -27.22603 -24.68654 -23.26600 -21.90048 -20.07002 -19.87938 -18.78731 -17.78168 -17.09207 -16.78042 -16.60035 -15.90663 -15.75029 -15.66208 -15.43816 -14.84725 -14.65740 -14.53580 -14.31897 -14.09628 -13.98002 -13.40505 -13.30247 -13.03169 -12.97887 -12.93091 -12.66122 -12.53480 -12.50720 -12.18916 -12.08187 -11.90691 -11.86301 -11.42922 -10.99034 -10.04002 -9.71916 -9.52211 -9.12388 -8.60087 -6.28859 0.13556 0.63765 1.19671 1.26210 1.49763 1.90159 2.12490 2.23469 2.71865 3.02203 3.08993 3.64612 3.95297 3.98290 4.03136 4.13384 4.25602 4.30719 4.51531 4.55909 4.66461 4.68007 4.72564 4.79221 4.81437 4.85348 4.92464 4.98392 4.99744 5.07756 5.20776 5.29245 5.41705 5.42580 5.48323 5.62385 5.68119 5.81745 5.85203 6.16265 6.49737 6.76667 7.38282 7.56382 8.50902 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014815 B = 0.008112 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.583017 B = 3450.732378 C = 5034.309434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.605 5.605 3 C 0.553 3.447 4 O -0.564 6.564 5 C -0.229 4.229 6 C -0.045 4.045 7 C -0.188 4.188 8 C -0.047 4.047 9 C -0.250 4.250 10 C 0.158 3.842 11 O -0.222 6.222 12 C -0.399 4.399 13 H 0.091 0.909 14 C 0.025 3.975 15 N -0.911 5.911 16 Si 0.957 3.043 17 H -0.277 1.277 18 H -0.262 1.262 19 H -0.273 1.273 20 C 0.156 3.844 21 C -0.124 4.124 22 C -0.151 4.151 23 C -0.143 4.143 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.176 0.824 28 H 0.168 0.832 29 H 0.150 0.850 30 H 0.113 0.887 31 H 0.286 0.714 32 H 0.031 0.969 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.029 0.971 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.350 -14.394 -8.572 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.339 5.339 3 C 0.344 3.656 4 O -0.444 6.444 5 C -0.234 4.234 6 C -0.063 4.063 7 C -0.206 4.206 8 C -0.065 4.065 9 C -0.269 4.269 10 C 0.106 3.894 11 O -0.127 6.127 12 C -0.475 4.475 13 H 0.108 0.892 14 C -0.175 4.175 15 N -0.552 5.552 16 Si 0.782 3.218 17 H -0.202 1.202 18 H -0.187 1.187 19 H -0.198 1.198 20 C 0.072 3.928 21 C -0.181 4.181 22 C -0.209 4.209 23 C -0.201 4.201 24 H 0.105 0.895 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.193 0.807 28 H 0.185 0.815 29 H 0.168 0.832 30 H 0.131 0.869 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.368 -14.508 -8.486 22.112 hybrid contribution 1.227 0.440 0.452 1.380 sum -13.141 -14.068 -8.033 20.860 Atomic orbital electron populations 1.22636 0.77649 1.04958 1.03510 1.47845 1.08210 1.04308 1.73522 1.18489 0.86716 0.84518 0.75919 1.90852 1.15691 1.87334 1.50572 1.19335 0.98986 0.93091 1.11947 1.21842 0.89987 0.99367 0.95074 1.21267 1.02583 0.92405 1.04314 1.21428 0.92297 1.00094 0.92698 1.21314 0.98927 0.97426 1.09230 1.19696 0.84842 0.93838 0.91037 1.83682 1.29053 1.41331 1.58642 1.20826 0.99841 0.98661 1.28208 0.89192 1.25021 0.97439 0.99664 0.95367 1.69681 1.19864 1.31079 1.34538 0.85402 0.78467 0.80079 0.77884 1.20231 1.18691 1.19815 1.20734 0.91436 0.83172 0.97418 1.22127 0.94908 0.98998 1.02048 1.22167 1.03464 1.00158 0.95154 1.22090 1.03087 0.99370 0.95527 0.89495 0.89293 0.89375 0.80746 0.81456 0.83249 0.86913 0.90449 0.95040 0.92385 0.93585 0.89791 0.89703 0.95184 0.93298 0.89974 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.98 7.76 127.77 0.99 1.97 16 2 N -0.61 -17.85 2.76 -803.10 -2.22 -20.07 16 3 C 0.55 22.90 7.21 86.69 0.62 23.53 16 4 O -0.56 -28.83 11.10 13.41 0.15 -28.68 16 5 C -0.23 -9.25 5.45 -19.99 -0.11 -9.36 16 6 C -0.04 -1.25 7.41 22.52 0.17 -1.08 16 7 C -0.19 -4.69 10.02 22.25 0.22 -4.47 16 8 C -0.05 -1.46 10.03 22.30 0.22 -1.24 16 9 C -0.25 -10.85 9.13 22.36 0.20 -10.65 16 10 C 0.16 7.81 6.62 22.91 0.15 7.96 16 11 O -0.22 -13.14 7.19 -2.65 -0.02 -13.16 16 12 C -0.40 -24.72 9.90 67.93 0.67 -24.05 16 13 H 0.09 5.65 5.52 -2.91 -0.02 5.63 16 14 C 0.03 1.54 5.49 84.85 0.47 2.01 16 15 N -0.91 -56.29 13.96 21.62 0.30 -55.99 16 16 Si 0.96 51.56 28.62 68.60 1.96 53.53 16 17 H -0.28 -14.81 7.11 99.48 0.71 -14.10 16 18 H -0.26 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.27 -15.74 7.11 99.48 0.71 -15.03 16 20 C 0.16 4.11 1.11 3.61 0.00 4.11 16 21 C -0.12 -4.28 6.84 71.98 0.49 -3.79 16 22 C -0.15 -3.34 8.51 71.99 0.61 -2.73 16 23 C -0.14 -2.56 8.41 71.98 0.61 -1.95 16 24 H 0.09 1.07 7.51 -2.39 -0.02 1.05 16 25 H 0.09 1.20 6.66 -2.39 -0.02 1.19 16 26 H 0.09 1.75 4.67 -2.39 -0.01 1.74 16 27 H 0.18 3.28 5.00 -2.91 -0.01 3.27 16 28 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 30 H 0.11 5.38 5.71 -2.91 -0.02 5.36 16 31 H 0.29 16.24 8.31 -92.71 -0.77 15.47 16 32 H 0.03 1.38 6.55 -2.39 -0.02 1.36 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.05 1.78 6.82 -2.39 -0.02 1.77 16 35 H 0.08 1.37 6.83 -2.39 -0.02 1.36 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.08 1.06 7.58 -2.39 -0.02 1.04 16 Total: -1.00 -80.50 316.84 6.55 -73.95 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.05 Total: 10.16 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 5.33 Total: -19.74 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -1.92 Total: -76.06 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: 0.13 Total: -41.84 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 1.96 Total: 53.53 kcal Total: -80.50 6.55 -73.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843712681.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.417 kcal (2) G-P(sol) polarization free energy of solvation -80.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds