Wall clock time and date at job start Mon Mar 30 2020 02:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35630 * 120.00138 * 2 1 4 4 C 1.41554 * 119.99613 * 179.97438 * 3 2 1 5 5 O 1.21772 * 120.00226 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99536 * 179.97438 * 4 3 2 7 7 C 1.46498 * 119.99720 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.47009 * 179.97438 * 7 6 4 9 9 C 1.52989 * 109.47371 * 299.99685 * 8 7 6 10 10 C 1.53006 * 109.47273 * 59.99875 * 8 7 6 11 11 C 1.50697 * 109.47035 * 179.97438 * 8 7 6 12 12 H 1.08001 * 120.00336 * 0.02562 * 11 8 7 13 13 C 1.37887 * 120.00063 * 179.97438 * 11 8 7 14 14 N 1.31511 * 119.99615 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 119.99958 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.47420 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.46940 * 120.00022 * 15 13 11 18 18 H 1.48503 * 109.46832 * 239.99753 * 15 13 11 19 19 C 1.41604 * 119.99694 * 179.97438 * 2 1 3 20 20 C 1.37956 * 126.10862 * 294.98686 * 19 2 1 21 21 C 1.40306 * 106.53099 * 180.02562 * 20 19 2 22 22 C 1.35154 * 107.20829 * 359.97438 * 21 20 19 23 23 O 1.34024 * 109.03193 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.47109 * 270.00704 * 1 2 3 25 25 H 1.09006 * 109.47106 * 30.00027 * 1 2 3 26 26 H 1.08997 * 109.47521 * 150.00034 * 1 2 3 27 27 H 1.07998 * 120.00050 * 359.97438 * 3 2 1 28 28 H 0.97001 * 120.00094 * 359.97438 * 6 4 3 29 29 H 1.09000 * 109.46713 * 299.99584 * 7 6 4 30 30 H 1.08999 * 109.47496 * 59.99732 * 7 6 4 31 31 H 1.09007 * 109.47539 * 59.99794 * 9 8 7 32 32 H 1.09000 * 109.47489 * 179.97438 * 9 8 7 33 33 H 1.08999 * 109.47556 * 300.00441 * 9 8 7 34 34 H 1.09000 * 109.47430 * 59.99744 * 10 8 7 35 35 H 1.09000 * 109.47279 * 180.02562 * 10 8 7 36 36 H 1.09003 * 109.46403 * 300.00024 * 10 8 7 37 37 H 0.97002 * 119.99955 * 180.02562 * 14 13 11 38 38 H 1.08006 * 126.72900 * 0.02562 * 20 19 2 39 39 H 1.08004 * 126.39481 * 180.02562 * 21 20 19 40 40 H 1.07998 * 125.48138 * 180.26688 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.1746 0.0000 4 6 3.6007 1.1744 0.0005 5 8 4.2095 0.1198 0.0015 6 7 4.2746 2.3416 0.0000 7 6 5.7396 2.3416 0.0000 8 6 6.2496 3.7840 -0.0013 9 6 5.7398 4.5041 -1.2511 10 6 5.7396 4.5065 1.2474 11 6 7.7566 3.7839 -0.0006 12 1 8.2966 2.8486 0.0002 13 6 8.4461 4.9780 -0.0021 14 7 7.7886 6.1169 -0.0036 15 14 10.3141 4.9779 -0.0021 16 1 10.8091 3.5778 0.0004 17 1 10.8091 5.6763 -1.2154 18 1 10.8090 5.6795 1.2096 19 6 2.2149 -1.2264 0.0005 20 6 2.2137 -2.1654 1.0112 21 6 3.0470 -3.2109 0.5858 22 6 3.5129 -2.8780 -0.6385 23 8 3.0106 -1.6856 -0.9879 24 1 -0.3633 0.0001 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6452 2.1099 -0.0004 28 1 3.7896 3.1817 -0.0011 29 1 6.1028 1.8282 0.8903 30 1 6.1030 1.8273 -0.8897 31 1 4.6497 4.5042 -1.2512 32 1 6.1028 5.5319 -1.2518 33 1 6.1031 3.9895 -2.1406 34 1 6.1029 3.9935 2.1379 35 1 6.1026 5.5343 1.2462 36 1 4.6496 4.5065 1.2472 37 1 8.2736 6.9570 -0.0050 38 1 1.6765 -2.1071 1.9464 39 1 3.2733 -4.1136 1.1339 40 1 4.1787 -3.4785 -1.2404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854909317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:50 Heat of formation + Delta-G solvation = -9.074038 kcal Electronic energy + Delta-G solvation = -21551.341331 eV Core-core repulsion = 18333.329509 eV Total energy + Delta-G solvation = -3218.011821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.20539 -39.44205 -36.57177 -35.13427 -33.23517 -32.61932 -30.94721 -28.71443 -28.39974 -25.71429 -25.54699 -24.81298 -22.62069 -21.39602 -20.65329 -19.16552 -18.67174 -17.53847 -16.37234 -15.84400 -15.64457 -15.21047 -14.72054 -14.66646 -13.86537 -13.65918 -13.50149 -13.07593 -12.86711 -12.71014 -12.66195 -12.47569 -12.35153 -12.14562 -11.88772 -11.37679 -11.19006 -10.87118 -10.65255 -10.37916 -10.19622 -9.70053 -9.62462 -9.61209 -9.35299 -9.23986 -8.76921 -8.42613 -8.26861 -7.87957 -6.01321 -4.11040 0.88393 2.06984 2.82925 3.27676 3.36146 3.36383 3.41072 3.74663 3.91764 4.41535 4.77101 4.90845 5.17628 5.22575 5.23917 5.25539 5.35095 5.42247 5.64891 5.84661 5.96809 6.10562 6.16562 6.29545 6.36053 6.42817 6.53911 6.72602 6.81375 6.83773 6.96553 7.03644 7.07991 7.37081 7.37840 7.56931 7.70565 8.02096 8.09418 8.18576 8.40075 8.76294 8.90139 9.54676 11.00163 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028421 B = 0.003948 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.962969 B = 7090.698303 C = 7735.416185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.013 3.987 3 C -0.184 4.184 4 C 0.525 3.475 5 O -0.537 6.537 6 N -0.711 5.711 7 C 0.134 3.866 8 C 0.054 3.946 9 C -0.130 4.130 10 C -0.130 4.130 11 C -0.504 4.504 12 H 0.057 0.943 13 C 0.066 3.934 14 N -0.886 5.886 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.039 3.961 20 C -0.199 4.199 21 C -0.218 4.218 22 C -0.032 4.032 23 O -0.141 6.141 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.135 0.865 28 H 0.397 0.603 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.006 0.994 32 H 0.085 0.915 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.085 0.915 36 H 0.006 0.994 37 H 0.259 0.741 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.708 -10.680 0.112 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.010 3.990 3 C -0.204 4.204 4 C 0.314 3.686 5 O -0.418 6.418 6 N -0.361 5.361 7 C 0.011 3.989 8 C 0.054 3.946 9 C -0.188 4.188 10 C -0.188 4.188 11 C -0.543 4.543 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.012 4.012 20 C -0.218 4.218 21 C -0.237 4.237 22 C -0.101 4.101 23 O -0.035 6.035 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.153 0.847 28 H 0.232 0.768 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.025 0.975 32 H 0.104 0.896 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.104 0.896 36 H 0.025 0.975 37 H 0.069 0.931 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -14.138 -11.040 -0.164 17.938 hybrid contribution 0.997 0.432 0.255 1.116 sum -13.140 -10.608 0.091 16.888 Atomic orbital electron populations 1.20898 0.89176 1.03663 1.03221 1.19179 0.95264 0.89316 0.95222 1.22375 0.95071 0.98444 1.04540 1.17113 0.88167 0.84721 0.78619 1.90826 1.70222 1.30539 1.50200 1.46248 1.09299 1.07623 1.72904 1.21673 0.76411 1.00439 1.00373 1.18368 0.95447 0.87966 0.92833 1.21819 0.95175 1.04203 0.97566 1.21823 0.95170 1.04203 0.97568 1.21029 0.89999 0.92651 1.50600 0.92439 1.24882 0.98309 0.95523 0.94826 1.69814 1.34740 0.97166 1.50766 0.86521 0.85744 0.78143 0.77518 1.19774 1.21057 1.21062 1.19278 0.96129 0.95564 0.90231 1.21878 1.05309 0.94562 1.00084 1.21512 1.03506 1.01545 0.97125 1.23961 1.01717 0.86379 0.98056 1.84168 1.48111 1.30499 1.40687 0.89995 0.90251 0.90812 0.84694 0.76752 0.92826 0.92805 0.97510 0.89616 0.95484 0.95488 0.89620 0.97512 0.93092 0.84007 0.83975 0.78804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.02 36.00 0.36 -0.57 16 2 C 0.01 0.16 5.78 -104.27 -0.60 -0.44 16 3 C -0.18 -2.53 9.49 -39.25 -0.37 -2.90 16 4 C 0.53 9.57 7.53 -14.99 -0.11 9.46 16 5 O -0.54 -11.56 12.81 -18.24 -0.23 -11.80 16 6 N -0.71 -13.10 4.95 -63.24 -0.31 -13.41 16 7 C 0.13 2.93 4.50 -4.04 -0.02 2.91 16 8 C 0.05 1.28 0.50 -155.67 -0.08 1.21 16 9 C -0.13 -2.97 8.08 37.15 0.30 -2.67 16 10 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 11 C -0.50 -13.39 8.01 -34.44 -0.28 -13.67 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 13 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 14 N -0.89 -23.76 9.35 55.43 0.52 -23.24 16 15 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 C 0.04 0.59 4.37 -38.40 -0.17 0.42 16 20 C -0.20 -2.79 10.90 -38.91 -0.42 -3.22 16 21 C -0.22 -2.91 10.87 -39.90 -0.43 -3.34 16 22 C -0.03 -0.44 12.06 29.63 0.36 -0.08 16 23 O -0.14 -2.37 8.92 -18.69 -0.17 -2.54 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 26 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 27 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.40 6.53 6.12 -40.82 -0.25 6.28 16 29 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 32 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 36 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 37 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 38 H 0.14 1.67 8.06 -52.48 -0.42 1.24 16 39 H 0.14 1.52 8.06 -52.48 -0.42 1.09 16 40 H 0.20 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 329.37 15.07 4.96 4.96 Total: -1.00 -30.98 329.37 -7.29 -38.28 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.78 Total: 5.75 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -1.26 Total: -13.90 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.21 Total: -36.65 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.40 Total: -14.34 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.98 -7.29 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854909317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.202 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds