Wall clock time and date at job start Mon Mar 30 2020 02:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35630 * 120.00138 * 2 1 4 4 C 1.41554 * 119.99613 * 179.97438 * 3 2 1 5 5 O 1.21772 * 120.00226 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99536 * 179.97438 * 4 3 2 7 7 C 1.46498 * 119.99720 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.47009 * 179.97438 * 7 6 4 9 9 C 1.52989 * 109.47371 * 299.99685 * 8 7 6 10 10 C 1.53006 * 109.47273 * 59.99875 * 8 7 6 11 11 C 1.50697 * 109.47035 * 179.97438 * 8 7 6 12 12 H 1.08001 * 120.00336 * 0.02562 * 11 8 7 13 13 C 1.37887 * 120.00063 * 179.97438 * 11 8 7 14 14 N 1.31511 * 119.99615 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 119.99958 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.47420 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.46940 * 120.00022 * 15 13 11 18 18 H 1.48503 * 109.46832 * 239.99753 * 15 13 11 19 19 C 1.41604 * 119.99694 * 179.97438 * 2 1 3 20 20 C 1.37956 * 126.10862 * 294.98686 * 19 2 1 21 21 C 1.40306 * 106.53099 * 180.02562 * 20 19 2 22 22 C 1.35154 * 107.20829 * 359.97438 * 21 20 19 23 23 O 1.34024 * 109.03193 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.47109 * 270.00704 * 1 2 3 25 25 H 1.09006 * 109.47106 * 30.00027 * 1 2 3 26 26 H 1.08997 * 109.47521 * 150.00034 * 1 2 3 27 27 H 1.07998 * 120.00050 * 359.97438 * 3 2 1 28 28 H 0.97001 * 120.00094 * 359.97438 * 6 4 3 29 29 H 1.09000 * 109.46713 * 299.99584 * 7 6 4 30 30 H 1.08999 * 109.47496 * 59.99732 * 7 6 4 31 31 H 1.09007 * 109.47539 * 59.99794 * 9 8 7 32 32 H 1.09000 * 109.47489 * 179.97438 * 9 8 7 33 33 H 1.08999 * 109.47556 * 300.00441 * 9 8 7 34 34 H 1.09000 * 109.47430 * 59.99744 * 10 8 7 35 35 H 1.09000 * 109.47279 * 180.02562 * 10 8 7 36 36 H 1.09003 * 109.46403 * 300.00024 * 10 8 7 37 37 H 0.97002 * 119.99955 * 180.02562 * 14 13 11 38 38 H 1.08006 * 126.72900 * 0.02562 * 20 19 2 39 39 H 1.08004 * 126.39481 * 180.02562 * 21 20 19 40 40 H 1.07998 * 125.48138 * 180.26688 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.1746 0.0000 4 6 3.6007 1.1744 0.0005 5 8 4.2095 0.1198 0.0015 6 7 4.2746 2.3416 0.0000 7 6 5.7396 2.3416 0.0000 8 6 6.2496 3.7840 -0.0013 9 6 5.7398 4.5041 -1.2511 10 6 5.7396 4.5065 1.2474 11 6 7.7566 3.7839 -0.0006 12 1 8.2966 2.8486 0.0002 13 6 8.4461 4.9780 -0.0021 14 7 7.7886 6.1169 -0.0036 15 14 10.3141 4.9779 -0.0021 16 1 10.8091 3.5778 0.0004 17 1 10.8091 5.6763 -1.2154 18 1 10.8090 5.6795 1.2096 19 6 2.2149 -1.2264 0.0005 20 6 2.2137 -2.1654 1.0112 21 6 3.0470 -3.2109 0.5858 22 6 3.5129 -2.8780 -0.6385 23 8 3.0106 -1.6856 -0.9879 24 1 -0.3633 0.0001 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6452 2.1099 -0.0004 28 1 3.7896 3.1817 -0.0011 29 1 6.1028 1.8282 0.8903 30 1 6.1030 1.8273 -0.8897 31 1 4.6497 4.5042 -1.2512 32 1 6.1028 5.5319 -1.2518 33 1 6.1031 3.9895 -2.1406 34 1 6.1029 3.9935 2.1379 35 1 6.1026 5.5343 1.2462 36 1 4.6496 4.5065 1.2472 37 1 8.2736 6.9570 -0.0050 38 1 1.6765 -2.1071 1.9464 39 1 3.2733 -4.1136 1.1339 40 1 4.1787 -3.4785 -1.2404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854909317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:50 Heat of formation + Delta-G solvation = -26.463829 kcal Electronic energy + Delta-G solvation = -21552.095409 eV Core-core repulsion = 18333.329509 eV Total energy + Delta-G solvation = -3218.765899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.29248 -40.87004 -38.27736 -36.24527 -34.96471 -33.69926 -32.79898 -29.86460 -29.31062 -27.57603 -27.42084 -26.50684 -23.73791 -22.46808 -21.99034 -20.66642 -20.13475 -18.86531 -17.83765 -17.43211 -16.92131 -16.57815 -16.46125 -16.21728 -15.25676 -14.94311 -14.71031 -14.47038 -14.18062 -14.05364 -13.88045 -13.70220 -13.43175 -13.26494 -13.20752 -13.10169 -12.72692 -12.69652 -12.58213 -12.26658 -12.15184 -11.50115 -11.29332 -10.95727 -10.73007 -10.69748 -10.41967 -10.37145 -9.85341 -8.97906 -8.03719 -6.19384 -0.18113 0.99333 1.39957 1.43899 1.53523 1.78588 2.26062 2.39476 2.52568 2.59851 3.19684 3.83489 3.93355 4.19062 4.26409 4.36215 4.44176 4.49541 4.52459 4.69427 4.79573 4.84309 4.95756 4.99152 5.02030 5.04570 5.12244 5.14977 5.18126 5.32031 5.36660 5.47233 5.61267 5.65824 5.65941 5.73246 6.13739 6.20233 6.30286 6.42416 6.72783 6.84480 7.37253 7.48240 8.95428 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028421 B = 0.003948 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.962969 B = 7090.698303 C = 7735.416185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.029 3.971 3 C -0.206 4.206 4 C 0.521 3.479 5 O -0.578 6.578 6 N -0.706 5.706 7 C 0.153 3.847 8 C 0.050 3.950 9 C -0.119 4.119 10 C -0.119 4.119 11 C -0.529 4.529 12 H 0.041 0.959 13 C 0.029 3.971 14 N -0.898 5.898 15 Si 0.945 3.055 16 H -0.277 1.277 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.009 3.991 20 C -0.207 4.207 21 C -0.225 4.225 22 C -0.050 4.050 23 O -0.171 6.171 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.175 0.825 28 H 0.409 0.591 29 H 0.032 0.968 30 H 0.032 0.968 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.015 0.985 34 H 0.016 0.984 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.261 0.739 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.670 -10.777 0.474 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.027 3.973 3 C -0.227 4.227 4 C 0.312 3.688 5 O -0.461 6.461 6 N -0.358 5.358 7 C 0.029 3.971 8 C 0.049 3.951 9 C -0.177 4.177 10 C -0.177 4.177 11 C -0.568 4.568 12 H 0.059 0.941 13 C -0.171 4.171 14 N -0.537 5.537 15 Si 0.772 3.228 16 H -0.202 1.202 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.041 4.041 20 C -0.226 4.226 21 C -0.243 4.243 22 C -0.118 4.118 23 O -0.065 6.065 24 H 0.122 0.878 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.192 0.808 28 H 0.246 0.754 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.180 0.820 39 H 0.185 0.815 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -16.130 -11.121 0.201 19.593 hybrid contribution 1.589 0.334 0.155 1.631 sum -14.540 -10.787 0.356 18.108 Atomic orbital electron populations 1.21040 0.85487 1.05081 1.04927 1.19807 0.97550 0.87991 0.91994 1.22378 0.92391 1.00618 1.07281 1.17831 0.90021 0.83684 0.77218 1.90809 1.71517 1.31835 1.51966 1.46046 1.07609 1.08633 1.73468 1.21163 0.78767 0.98835 0.98338 1.18371 0.94108 0.88982 0.93604 1.21653 0.97097 1.02317 0.96611 1.21654 0.97108 1.02305 0.96598 1.21287 0.91966 0.92211 1.51306 0.94080 1.25445 1.01686 0.95321 0.94633 1.69908 1.35780 0.97331 1.50669 0.85706 0.81705 0.77754 0.77640 1.20205 1.20570 1.20563 1.19946 0.96620 0.96944 0.90626 1.22276 1.05352 0.94389 1.00572 1.21917 1.03032 1.02327 0.97060 1.24646 1.02076 0.86053 0.99048 1.84140 1.48908 1.31675 1.41810 0.87798 0.87882 0.90333 0.80803 0.75366 0.94910 0.94957 0.94322 0.91791 0.96555 0.96509 0.91811 0.94297 0.92978 0.81975 0.81531 0.76307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.02 71.24 0.71 -0.67 16 2 C 0.03 0.69 5.78 -19.64 -0.11 0.57 16 3 C -0.21 -5.23 9.49 22.48 0.21 -5.02 16 4 C 0.52 18.68 7.53 85.06 0.64 19.32 16 5 O -0.58 -25.25 12.81 17.76 0.23 -25.03 16 6 N -0.71 -25.48 4.95 -472.19 -2.34 -27.81 16 7 C 0.15 6.83 4.50 86.38 0.39 7.22 16 8 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 9 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 10 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 11 C -0.53 -28.66 8.01 25.60 0.21 -28.46 16 12 H 0.04 2.30 7.74 -2.91 -0.02 2.27 16 13 C 0.03 1.55 5.15 84.66 0.44 1.98 16 14 N -0.90 -48.23 9.35 21.45 0.20 -48.03 16 15 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 C 0.01 0.26 4.37 23.03 0.10 0.36 16 20 C -0.21 -5.53 10.90 22.71 0.25 -5.28 16 21 C -0.22 -5.77 10.87 22.06 0.24 -5.53 16 22 C -0.05 -1.38 12.06 67.11 0.81 -0.57 16 23 O -0.17 -5.76 8.92 16.15 0.14 -5.61 16 24 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.10 0.87 8.08 -2.38 -0.02 0.85 16 26 H 0.08 0.96 8.10 -2.39 -0.02 0.94 16 27 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 28 H 0.41 12.57 6.12 -92.71 -0.57 12.00 16 29 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.04 1.45 6.86 -2.38 -0.02 1.44 16 32 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 33 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 36 H 0.04 1.46 6.86 -2.39 -0.02 1.44 16 37 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 38 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 39 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 40 H 0.22 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -68.68 329.37 5.75 -62.93 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.47 Total: 21.65 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: 5.02 Total: -23.31 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -2.14 Total: -75.84 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: 0.37 Total: -30.64 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -68.68 5.75 -62.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854909317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.464 kcal (2) G-P(sol) polarization free energy of solvation -68.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds