Wall clock time and date at job start Mon Mar 30 2020 02:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35630 * 119.99889 * 2 1 4 4 C 1.41546 * 120.00051 * 5.68210 * 3 2 1 5 5 O 1.21780 * 120.00270 * 5.67887 * 4 3 2 6 6 N 1.34782 * 120.00132 * 185.67811 * 4 3 2 7 7 C 1.46500 * 120.00196 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46982 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47494 * 300.00527 * 8 7 6 10 10 C 1.53000 * 109.46993 * 60.00613 * 8 7 6 11 11 C 1.50697 * 109.46750 * 180.02562 * 8 7 6 12 12 H 1.07996 * 120.00512 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99663 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00129 * 0.02562 * 13 11 8 15 15 Si 1.86802 * 119.99912 * 180.02562 * 13 11 8 16 16 H 1.48493 * 109.47166 * 89.99961 * 15 13 11 17 17 H 1.48505 * 109.47240 * 210.00537 * 15 13 11 18 18 H 1.48506 * 109.46811 * 330.00214 * 15 13 11 19 19 C 1.41607 * 119.99999 * 179.97438 * 2 1 3 20 20 C 1.37946 * 126.10482 * 294.71363 * 19 2 1 21 21 C 1.40322 * 106.52819 * 179.90630 * 20 19 2 22 22 C 1.35150 * 107.20493 * 0.35799 * 21 20 19 23 23 O 1.34023 * 109.03497 * 359.77565 * 22 21 20 24 24 H 1.09000 * 109.47459 * 174.79376 * 1 2 3 25 25 H 1.09006 * 109.46959 * 54.80063 * 1 2 3 26 26 H 1.08997 * 109.47333 * 294.80178 * 1 2 3 27 27 H 1.08005 * 119.99442 * 185.68662 * 3 2 1 28 28 H 0.96999 * 119.99827 * 0.02562 * 6 4 3 29 29 H 1.09001 * 109.47049 * 300.00537 * 7 6 4 30 30 H 1.08999 * 109.46609 * 60.00140 * 7 6 4 31 31 H 1.09003 * 109.47330 * 59.99785 * 9 8 7 32 32 H 1.08992 * 109.47541 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.46419 * 300.00088 * 9 8 7 34 34 H 1.09001 * 109.47281 * 59.99309 * 10 8 7 35 35 H 1.08995 * 109.47370 * 179.97438 * 10 8 7 36 36 H 1.09003 * 109.46836 * 299.99605 * 10 8 7 37 37 H 0.97002 * 119.99720 * 179.97438 * 14 13 11 38 38 H 1.07997 * 126.73652 * 0.02562 * 20 19 2 39 39 H 1.07997 * 126.39348 * 180.15172 * 21 20 19 40 40 H 1.08001 * 125.48505 * 179.77019 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 1.4826 2.3974 0.1214 5 8 0.2827 2.3923 0.3294 6 7 2.1416 3.5675 0.0067 7 6 1.4144 4.8331 0.1318 8 6 2.3892 6.0002 -0.0368 9 6 3.4689 5.9233 1.0445 10 6 3.0438 5.9225 -1.4175 11 6 1.6413 7.3021 0.0925 12 1 0.5772 7.2975 0.2769 13 6 2.3157 8.4991 -0.0237 14 7 3.6116 8.5047 -0.2477 15 14 1.3887 10.1129 0.1373 16 1 1.3816 10.5399 1.5595 17 1 2.0559 11.1515 -0.6882 18 1 -0.0084 9.9300 -0.3316 19 6 2.2150 -1.2264 0.0005 20 6 2.2179 -2.1629 1.0134 21 6 3.0474 -3.2107 0.5859 22 6 3.5138 -2.8775 -0.6381 23 8 3.0120 -1.6848 -0.9872 24 1 -0.3634 -1.0234 -0.0932 25 1 -0.3633 0.5924 -0.8398 26 1 -0.3634 0.4311 0.9328 27 1 3.2611 1.1768 -0.0927 28 1 3.0972 3.5716 -0.1593 29 1 0.6449 4.8877 -0.6383 30 1 0.9484 4.8886 1.1156 31 1 4.0099 4.9816 0.9514 32 1 4.1631 6.7550 0.9247 33 1 3.0024 5.9787 2.0281 34 1 2.2747 5.9773 -2.1879 35 1 3.7380 6.7542 -1.5379 36 1 3.5849 4.9809 -1.5106 37 1 4.0860 9.3468 -0.3298 38 1 1.6847 -2.1024 1.9506 39 1 3.2738 -4.1133 1.1341 40 1 4.1832 -3.4759 -1.2383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854909318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:53 Heat of formation + Delta-G solvation = -11.122771 kcal Electronic energy + Delta-G solvation = -21024.955330 eV Core-core repulsion = 17806.854668 eV Total energy + Delta-G solvation = -3218.100661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.69619 -39.65631 -36.65220 -35.02182 -33.28677 -33.12219 -30.98420 -29.14271 -28.01159 -25.71901 -25.57820 -24.89669 -23.10602 -21.85765 -20.58196 -19.34697 -18.72199 -17.20781 -16.92958 -16.17940 -15.74892 -15.42230 -14.86985 -14.57524 -14.47745 -13.70951 -13.19038 -13.15882 -13.06961 -12.89874 -12.78604 -12.48174 -12.36924 -12.17063 -11.76863 -11.36683 -11.18984 -10.85935 -10.68811 -10.37935 -10.19706 -10.17452 -9.62567 -9.52502 -9.45517 -9.21534 -8.78273 -8.52448 -8.39924 -8.20895 -6.01734 -4.11826 0.80154 1.55654 2.36862 2.90490 3.28586 3.35574 3.39415 3.64469 3.92136 4.40805 4.59905 4.74346 4.88557 4.92166 5.25025 5.36205 5.45935 5.57254 5.62718 5.81149 5.86227 5.98616 6.15222 6.23354 6.30603 6.34139 6.46459 6.53105 6.79362 6.83657 6.85080 6.95383 7.02784 7.05096 7.36430 7.56375 7.69891 8.01634 8.06592 8.16442 8.39039 8.69560 8.89085 9.53998 10.99694 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040906 B = 0.003174 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.327130 B = 8820.402939 C = 9177.198224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.019 3.981 3 C -0.181 4.181 4 C 0.533 3.467 5 O -0.549 6.549 6 N -0.711 5.711 7 C 0.132 3.868 8 C 0.055 3.945 9 C -0.131 4.131 10 C -0.131 4.131 11 C -0.506 4.506 12 H 0.058 0.942 13 C 0.066 3.934 14 N -0.886 5.886 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.011 3.989 20 C -0.183 4.183 21 C -0.213 4.213 22 C -0.041 4.041 23 O -0.162 6.162 24 H 0.052 0.948 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.127 0.873 28 H 0.398 0.602 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.006 0.994 32 H 0.085 0.915 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.085 0.915 36 H 0.006 0.994 37 H 0.260 0.740 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.180 -19.926 0.081 19.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.016 3.984 3 C -0.202 4.202 4 C 0.323 3.677 5 O -0.431 6.431 6 N -0.360 5.360 7 C 0.009 3.991 8 C 0.055 3.945 9 C -0.189 4.189 10 C -0.189 4.189 11 C -0.545 4.545 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.039 4.039 20 C -0.202 4.202 21 C -0.232 4.232 22 C -0.109 4.109 23 O -0.058 6.058 24 H 0.071 0.929 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.145 0.855 28 H 0.234 0.766 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.104 0.896 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.104 0.896 36 H 0.025 0.975 37 H 0.070 0.930 38 H 0.170 0.830 39 H 0.168 0.832 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.543 -19.578 -0.074 19.586 hybrid contribution 0.292 0.711 0.156 0.784 sum 0.835 -18.867 0.082 18.885 Atomic orbital electron populations 1.20981 0.88458 1.01191 1.05071 1.19181 0.96062 0.88214 0.94921 1.22236 1.00818 0.92739 1.04414 1.16945 0.87485 0.84521 0.78776 1.90799 1.14568 1.88107 1.49675 1.46291 1.12480 1.06484 1.70792 1.21715 0.95448 0.81556 1.00367 1.18355 0.91979 0.91392 0.92795 1.21833 1.00043 0.99221 0.97784 1.21832 1.00282 0.99222 0.97545 1.20994 0.94564 0.89772 1.49126 0.92421 1.24885 0.94878 0.98969 0.94800 1.69806 1.07229 1.26141 1.49305 0.86572 0.80032 0.83270 0.78002 1.20718 1.21273 1.19895 1.19835 0.97989 0.96830 0.89206 1.22167 1.03767 0.93843 1.00445 1.21723 1.02778 1.01572 0.97100 1.24209 1.02402 0.86273 0.98034 1.84198 1.49297 1.31306 1.40956 0.92908 0.89518 0.88793 0.85517 0.76647 0.92630 0.92633 0.97499 0.89598 0.95445 0.95433 0.89605 0.97487 0.93014 0.82959 0.83177 0.77980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 8.31 36.00 0.30 -1.00 16 2 C 0.02 0.25 5.77 -104.27 -0.60 -0.35 16 3 C -0.18 -2.58 9.46 -39.25 -0.37 -2.95 16 4 C 0.53 9.27 7.50 -15.00 -0.11 9.16 16 5 O -0.55 -10.85 13.09 5.12 0.07 -10.78 16 6 N -0.71 -12.80 4.95 -63.24 -0.31 -13.11 16 7 C 0.13 2.80 4.50 -4.04 -0.02 2.78 16 8 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 9 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 10 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 11 C -0.51 -13.28 8.01 -34.44 -0.28 -13.56 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 14 N -0.89 -23.69 9.35 55.43 0.52 -23.17 16 15 Si 0.89 20.76 29.54 -169.99 -5.02 15.73 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 19 C 0.01 0.14 6.29 -38.40 -0.24 -0.10 16 20 C -0.18 -1.94 10.90 -38.90 -0.42 -2.37 16 21 C -0.21 -1.89 10.87 -39.90 -0.43 -2.32 16 22 C -0.04 -0.35 12.06 29.63 0.36 0.00 16 23 O -0.16 -1.93 10.67 4.67 0.05 -1.88 16 24 H 0.05 0.57 7.97 -51.93 -0.41 0.15 16 25 H 0.09 1.22 7.41 -51.93 -0.39 0.83 16 26 H 0.09 1.30 7.09 -51.93 -0.37 0.93 16 27 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 28 H 0.40 6.55 6.12 -40.82 -0.25 6.30 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 32 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 36 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 37 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.20 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 329.70 15.07 4.97 4.97 Total: -1.00 -28.88 329.70 -6.81 -35.69 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.68 Total: 5.76 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.39 Total: -13.20 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.21 Total: -36.28 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.12 Total: -12.67 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.88 -6.81 -35.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854909318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.564 kcal (2) G-P(sol) polarization free energy of solvation -28.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds