Wall clock time and date at job start Mon Mar 30 2020 02:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35630 * 119.99889 * 2 1 4 4 C 1.41546 * 120.00051 * 5.68210 * 3 2 1 5 5 O 1.21780 * 120.00270 * 5.67887 * 4 3 2 6 6 N 1.34782 * 120.00132 * 185.67811 * 4 3 2 7 7 C 1.46500 * 120.00196 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46982 * 179.97438 * 7 6 4 9 9 C 1.52997 * 109.47494 * 300.00527 * 8 7 6 10 10 C 1.53000 * 109.46993 * 60.00613 * 8 7 6 11 11 C 1.50697 * 109.46750 * 180.02562 * 8 7 6 12 12 H 1.07996 * 120.00512 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99663 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00129 * 0.02562 * 13 11 8 15 15 Si 1.86802 * 119.99912 * 180.02562 * 13 11 8 16 16 H 1.48493 * 109.47166 * 89.99961 * 15 13 11 17 17 H 1.48505 * 109.47240 * 210.00537 * 15 13 11 18 18 H 1.48506 * 109.46811 * 330.00214 * 15 13 11 19 19 C 1.41607 * 119.99999 * 179.97438 * 2 1 3 20 20 C 1.37946 * 126.10482 * 294.71363 * 19 2 1 21 21 C 1.40322 * 106.52819 * 179.90630 * 20 19 2 22 22 C 1.35150 * 107.20493 * 0.35799 * 21 20 19 23 23 O 1.34023 * 109.03497 * 359.77565 * 22 21 20 24 24 H 1.09000 * 109.47459 * 174.79376 * 1 2 3 25 25 H 1.09006 * 109.46959 * 54.80063 * 1 2 3 26 26 H 1.08997 * 109.47333 * 294.80178 * 1 2 3 27 27 H 1.08005 * 119.99442 * 185.68662 * 3 2 1 28 28 H 0.96999 * 119.99827 * 0.02562 * 6 4 3 29 29 H 1.09001 * 109.47049 * 300.00537 * 7 6 4 30 30 H 1.08999 * 109.46609 * 60.00140 * 7 6 4 31 31 H 1.09003 * 109.47330 * 59.99785 * 9 8 7 32 32 H 1.08992 * 109.47541 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.46419 * 300.00088 * 9 8 7 34 34 H 1.09001 * 109.47281 * 59.99309 * 10 8 7 35 35 H 1.08995 * 109.47370 * 179.97438 * 10 8 7 36 36 H 1.09003 * 109.46836 * 299.99605 * 10 8 7 37 37 H 0.97002 * 119.99720 * 179.97438 * 14 13 11 38 38 H 1.07997 * 126.73652 * 0.02562 * 20 19 2 39 39 H 1.07997 * 126.39348 * 180.15172 * 21 20 19 40 40 H 1.08001 * 125.48505 * 179.77019 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 1.4826 2.3974 0.1214 5 8 0.2827 2.3923 0.3294 6 7 2.1416 3.5675 0.0067 7 6 1.4144 4.8331 0.1318 8 6 2.3892 6.0002 -0.0368 9 6 3.4689 5.9233 1.0445 10 6 3.0438 5.9225 -1.4175 11 6 1.6413 7.3021 0.0925 12 1 0.5772 7.2975 0.2769 13 6 2.3157 8.4991 -0.0237 14 7 3.6116 8.5047 -0.2477 15 14 1.3887 10.1129 0.1373 16 1 1.3816 10.5399 1.5595 17 1 2.0559 11.1515 -0.6882 18 1 -0.0084 9.9300 -0.3316 19 6 2.2150 -1.2264 0.0005 20 6 2.2179 -2.1629 1.0134 21 6 3.0474 -3.2107 0.5859 22 6 3.5138 -2.8775 -0.6381 23 8 3.0120 -1.6848 -0.9872 24 1 -0.3634 -1.0234 -0.0932 25 1 -0.3633 0.5924 -0.8398 26 1 -0.3634 0.4311 0.9328 27 1 3.2611 1.1768 -0.0927 28 1 3.0972 3.5716 -0.1593 29 1 0.6449 4.8877 -0.6383 30 1 0.9484 4.8886 1.1156 31 1 4.0099 4.9816 0.9514 32 1 4.1631 6.7550 0.9247 33 1 3.0024 5.9787 2.0281 34 1 2.2747 5.9773 -2.1879 35 1 3.7380 6.7542 -1.5379 36 1 3.5849 4.9809 -1.5106 37 1 4.0860 9.3468 -0.3298 38 1 1.6847 -2.1024 1.9506 39 1 3.2738 -4.1133 1.1341 40 1 4.1832 -3.4759 -1.2383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854909318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:53 Heat of formation + Delta-G solvation = -27.193556 kcal Electronic energy + Delta-G solvation = -21025.652211 eV Core-core repulsion = 17806.854668 eV Total energy + Delta-G solvation = -3218.797543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.47110 -41.05763 -38.33921 -36.19911 -34.96982 -33.88265 -32.81834 -30.09306 -29.13953 -27.56895 -27.41572 -26.56044 -24.20075 -22.58947 -21.78191 -20.68581 -20.25441 -18.31367 -18.12711 -17.62187 -17.04337 -16.70261 -16.37048 -16.21041 -15.72469 -15.01420 -14.73345 -14.67655 -14.24743 -13.93849 -13.86024 -13.76933 -13.48528 -13.39677 -13.16587 -13.09299 -12.78576 -12.67417 -12.58786 -12.25066 -12.13234 -11.48311 -11.23672 -10.93594 -10.76874 -10.65072 -10.57630 -10.39388 -9.84354 -9.23945 -8.02284 -6.18196 -0.24603 0.72045 1.42667 1.45376 1.53716 1.65929 2.06031 2.35341 2.43265 2.60649 3.21309 3.75839 3.86111 4.06593 4.19231 4.24094 4.41612 4.49301 4.52951 4.70879 4.74924 4.80404 4.93402 4.97492 5.00484 5.05627 5.08768 5.11322 5.19551 5.20544 5.36724 5.43495 5.57731 5.61735 5.66715 5.67232 6.09726 6.14526 6.21554 6.43391 6.68669 6.86348 7.30858 7.49616 8.96733 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040906 B = 0.003174 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.327130 B = 8820.402939 C = 9177.198224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.042 3.958 3 C -0.201 4.201 4 C 0.536 3.464 5 O -0.579 6.579 6 N -0.708 5.708 7 C 0.149 3.851 8 C 0.051 3.949 9 C -0.121 4.121 10 C -0.121 4.121 11 C -0.529 4.529 12 H 0.045 0.955 13 C 0.027 3.973 14 N -0.900 5.900 15 Si 0.946 3.054 16 H -0.279 1.279 17 H -0.283 1.283 18 H -0.275 1.275 19 C -0.028 4.028 20 C -0.177 4.177 21 C -0.222 4.222 22 C -0.030 4.030 23 O -0.180 6.180 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.146 0.854 28 H 0.407 0.593 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.035 0.965 32 H 0.062 0.938 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.260 0.740 38 H 0.163 0.837 39 H 0.177 0.823 40 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.081 -22.185 0.072 22.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.039 3.961 3 C -0.221 4.221 4 C 0.327 3.673 5 O -0.463 6.463 6 N -0.359 5.359 7 C 0.025 3.975 8 C 0.050 3.950 9 C -0.179 4.179 10 C -0.179 4.179 11 C -0.568 4.568 12 H 0.064 0.936 13 C -0.172 4.172 14 N -0.539 5.539 15 Si 0.772 3.228 16 H -0.205 1.205 17 H -0.208 1.208 18 H -0.200 1.200 19 C -0.077 4.077 20 C -0.196 4.196 21 C -0.240 4.240 22 C -0.098 4.098 23 O -0.076 6.076 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.164 0.836 28 H 0.244 0.756 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.180 0.820 39 H 0.195 0.805 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 1.460 -21.850 -0.081 21.899 hybrid contribution 0.012 1.238 0.163 1.248 sum 1.472 -20.612 0.082 20.665 Atomic orbital electron populations 1.20940 0.88679 1.02139 1.03808 1.19288 0.96104 0.88691 0.91968 1.22102 1.01585 0.91394 1.07064 1.17371 0.87182 0.85104 0.77621 1.90788 1.15970 1.88499 1.51013 1.46102 1.12757 1.05613 1.71425 1.21259 0.94768 0.82544 0.98925 1.18352 0.92296 0.90986 0.93331 1.21675 0.99400 0.99782 0.97031 1.21676 0.99609 0.99771 0.96844 1.21293 0.94379 0.91582 1.49518 0.93625 1.25470 0.95633 1.01422 0.94701 1.69913 1.07920 1.26627 1.49431 0.85749 0.78881 0.80208 0.77913 1.20467 1.20836 1.20016 1.19699 1.00133 0.97282 0.90567 1.22489 1.03235 0.93634 1.00275 1.22100 1.02409 1.02099 0.97442 1.25099 1.01280 0.85079 0.98314 1.84183 1.49552 1.32660 1.41179 0.90728 0.90922 0.89905 0.83617 0.75565 0.94195 0.94144 0.94570 0.91897 0.96268 0.96277 0.91893 0.94587 0.93035 0.81977 0.80515 0.74151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.53 8.31 71.23 0.59 -1.93 16 2 C 0.04 1.08 5.77 -19.64 -0.11 0.97 16 3 C -0.20 -5.54 9.46 22.48 0.21 -5.33 16 4 C 0.54 18.54 7.50 85.06 0.64 19.18 16 5 O -0.58 -23.23 13.09 -4.60 -0.06 -23.29 16 6 N -0.71 -25.19 4.95 -472.18 -2.34 -27.53 16 7 C 0.15 6.41 4.50 86.38 0.39 6.80 16 8 C 0.05 2.38 0.50 -52.93 -0.03 2.36 16 9 C -0.12 -5.46 8.08 71.98 0.58 -4.88 16 10 C -0.12 -5.47 8.08 71.98 0.58 -4.89 16 11 C -0.53 -28.24 8.01 25.60 0.21 -28.03 16 12 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 13 C 0.03 1.45 5.15 84.66 0.44 1.89 16 14 N -0.90 -48.41 9.35 21.45 0.20 -48.21 16 15 Si 0.95 42.85 29.54 68.60 2.03 44.87 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 C -0.03 -0.63 6.29 23.03 0.14 -0.48 16 20 C -0.18 -3.33 10.90 22.71 0.25 -3.08 16 21 C -0.22 -3.17 10.87 22.07 0.24 -2.93 16 22 C -0.03 -0.42 12.06 67.11 0.81 0.39 16 23 O -0.18 -3.86 10.67 -6.22 -0.07 -3.92 16 24 H 0.07 1.52 7.97 -2.39 -0.02 1.50 16 25 H 0.07 2.07 7.41 -2.38 -0.02 2.05 16 26 H 0.08 2.31 7.09 -2.39 -0.02 2.29 16 27 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 28 H 0.41 12.83 6.12 -92.71 -0.57 12.26 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 32 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 33 H 0.02 0.84 8.14 -2.39 -0.02 0.83 16 34 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 36 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 37 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 38 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 39 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 40 H 0.24 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -62.50 329.70 5.17 -57.32 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.47 Total: 20.71 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 4.94 Total: -19.96 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -2.14 Total: -75.74 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.13 Total: -27.21 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -62.50 5.17 -57.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854909318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.128 kcal (2) G-P(sol) polarization free energy of solvation -62.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds