Wall clock time and date at job start Mon Mar 30 2020 01:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47170 * 2 1 4 4 C 1.50701 * 109.46611 * 240.00045 * 2 1 3 5 5 H 1.07999 * 119.99992 * 239.99766 * 4 2 1 6 6 C 1.37875 * 120.00038 * 60.00387 * 4 2 1 7 7 N 1.31514 * 120.00041 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00004 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47274 * 90.00144 * 8 6 4 10 10 H 1.48504 * 109.47383 * 209.99816 * 8 6 4 11 11 H 1.48502 * 109.47297 * 329.99779 * 8 6 4 12 12 C 1.53002 * 109.46828 * 120.00291 * 2 1 3 13 13 N 1.46494 * 109.47001 * 299.99604 * 12 2 1 14 14 C 1.34784 * 119.99635 * 180.02562 * 13 12 2 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 12 17 17 H 1.09003 * 115.54880 * 34.27168 * 16 14 13 18 18 C 1.53003 * 117.49685 * 248.61175 * 16 14 13 19 19 C 1.52993 * 117.49869 * 179.97438 * 16 14 13 20 20 H 1.08999 * 117.49884 * 359.97438 * 19 16 14 21 21 C 1.50703 * 117.49649 * 214.97633 * 19 16 14 22 22 C 1.34519 * 125.78733 * 119.99612 * 21 19 16 23 23 C 1.41379 * 106.83943 * 179.97438 * 22 21 19 24 24 C 1.34513 * 106.84382 * 0.02562 * 23 22 21 25 25 O 1.34302 * 108.41767 * 359.72842 * 24 23 22 26 26 H 1.09005 * 109.46707 * 300.00089 * 1 2 3 27 27 H 1.08998 * 109.47134 * 59.99558 * 1 2 3 28 28 H 1.08999 * 109.47484 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46624 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46996 * 300.00522 * 3 2 1 31 31 H 1.08996 * 109.46790 * 60.00298 * 3 2 1 32 32 H 0.97001 * 120.00302 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46767 * 179.97438 * 12 2 1 34 34 H 1.09002 * 109.47113 * 60.00010 * 12 2 1 35 35 H 0.96995 * 120.00292 * 0.27801 * 13 12 2 36 36 H 1.08992 * 117.49885 * 359.97438 * 18 16 14 37 37 H 1.09000 * 117.49751 * 145.00134 * 18 16 14 38 38 H 1.07997 * 126.58200 * 0.04002 * 22 21 19 39 39 H 1.08009 * 126.58243 * 179.97438 * 23 22 21 40 40 H 1.08000 * 125.79628 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 1.3445 -2.1614 -4.4124 10 1 2.4871 -0.1402 -5.1121 11 1 3.6306 -1.7566 -3.7121 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4910 3.6695 15 8 2.5749 -1.4771 3.7807 16 6 1.3750 0.2190 4.9000 17 1 0.3827 0.6620 4.8147 18 6 2.4042 0.9524 5.7625 19 6 1.7792 -0.3528 6.2603 20 1 2.4085 -1.2428 6.2652 21 6 0.7749 -0.2605 7.3801 22 6 0.2486 -1.3001 8.0523 23 6 -0.6412 -0.7606 9.0094 24 6 -0.6058 0.5762 8.8646 25 8 0.2578 0.8737 7.8800 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 0.7087 1.1614 -3.4843 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7490 1.2492 35 1 0.9908 0.7556 2.3564 36 1 3.4449 0.9209 5.4401 37 1 2.0889 1.8776 6.2448 38 1 0.4650 -2.3460 7.8924 39 1 -1.2360 -1.3154 9.7201 40 1 -1.1719 1.2897 9.4450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863923678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:20 Heat of formation + Delta-G solvation = -5.308796 kcal Electronic energy + Delta-G solvation = -20988.302841 eV Core-core repulsion = 17770.454293 eV Total energy + Delta-G solvation = -3217.848548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.73703 -39.66625 -37.03457 -35.91116 -33.28423 -33.13914 -30.89764 -29.64228 -26.16444 -25.73577 -25.24755 -23.44967 -23.14695 -21.82700 -20.32457 -19.79156 -18.77903 -17.78899 -17.07502 -16.10858 -15.82003 -15.41376 -15.01882 -14.71474 -14.55569 -13.89734 -13.37778 -12.97338 -12.95875 -12.81965 -12.71497 -12.48014 -12.19470 -12.03335 -11.41041 -11.20990 -11.09624 -10.88062 -10.70113 -10.62380 -10.39170 -10.21242 -10.05096 -9.64719 -9.61754 -9.28162 -8.80166 -8.50360 -8.46369 -8.32778 -6.03061 -4.13272 1.49423 2.40584 2.75127 2.84561 3.27772 3.34813 3.38406 3.62765 3.83619 4.37091 4.42682 4.58518 4.74450 4.87192 4.92255 5.16325 5.23253 5.23752 5.50887 5.64139 5.74830 5.82184 5.92673 5.95457 6.22079 6.30956 6.33032 6.49780 6.75803 6.81858 6.92320 6.98202 7.00687 7.01139 7.34245 7.54668 7.68476 7.99944 8.03023 8.14115 8.37275 8.66101 8.87512 9.52668 10.98366 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041050 B = 0.003094 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.925115 B = 9047.913734 C = 9164.941538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.709 5.709 14 C 0.534 3.466 15 O -0.552 6.552 16 C -0.171 4.171 17 H 0.125 0.875 18 C -0.138 4.138 19 C -0.053 4.053 20 H 0.148 0.852 21 C 0.022 3.978 22 C -0.204 4.204 23 C -0.213 4.213 24 C -0.046 4.046 25 O -0.175 6.175 26 H 0.006 0.994 27 H 0.086 0.914 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.085 0.915 31 H 0.007 0.993 32 H 0.260 0.740 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.399 0.601 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.771 2.270 19.121 19.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.359 5.359 14 C 0.319 3.681 15 O -0.431 6.431 16 C -0.193 4.193 17 H 0.142 0.858 18 C -0.175 4.175 19 C -0.071 4.071 20 H 0.165 0.835 21 C -0.028 4.028 22 C -0.223 4.223 23 C -0.232 4.232 24 C -0.113 4.113 25 O -0.072 6.072 26 H 0.025 0.975 27 H 0.104 0.896 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.235 0.765 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -2.273 1.967 18.896 19.134 hybrid contribution -0.264 -0.277 -0.756 0.848 sum -2.537 1.691 18.140 18.394 Atomic orbital electron populations 1.21839 0.97759 0.99193 1.00112 1.18358 0.92799 0.92786 0.90525 1.21831 0.98596 0.98326 1.00132 1.20988 1.31516 1.12107 0.89899 0.92427 1.24879 0.94861 0.94908 0.98861 1.69802 1.36681 1.22731 1.23242 0.86569 0.79331 0.79385 0.82572 1.20708 1.21257 1.19897 1.21752 0.98195 0.95816 0.83339 1.46229 1.52169 1.31762 1.05736 1.19434 0.80497 0.84164 0.83979 1.90664 1.39034 1.26573 1.86867 1.22441 1.01689 1.04712 0.90413 0.85753 1.23069 0.98611 0.95432 1.00438 1.20497 0.97805 1.00540 0.88269 0.83468 1.21423 0.99478 0.83458 0.98399 1.21568 1.01449 1.00024 0.99245 1.21841 1.03802 0.94420 1.03109 1.24003 0.96679 0.97163 0.93464 1.83975 1.47072 1.34084 1.42054 0.97495 0.89561 0.95437 0.95421 0.89584 0.97435 0.92993 0.92629 0.92656 0.76527 0.87197 0.87269 0.83293 0.83451 0.78117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 2 C 0.06 1.29 0.50 -155.65 -0.08 1.21 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.51 -13.24 8.01 -34.44 -0.28 -13.52 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.55 9.35 55.43 0.52 -23.04 16 8 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 12 C 0.13 2.78 4.50 -4.04 -0.02 2.76 16 13 N -0.71 -12.57 4.96 -60.29 -0.30 -12.87 16 14 C 0.53 9.14 7.61 -10.98 -0.08 9.05 16 15 O -0.55 -11.27 16.26 5.56 0.09 -11.18 16 16 C -0.17 -2.24 5.89 -91.77 -0.54 -2.78 16 17 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 18 C -0.14 -1.53 9.87 -26.71 -0.26 -1.80 16 19 C -0.05 -0.64 5.75 -91.76 -0.53 -1.17 16 20 H 0.15 1.86 7.67 -51.93 -0.40 1.47 16 21 C 0.02 0.27 6.80 -35.62 -0.24 0.03 16 22 C -0.20 -2.29 10.81 -39.70 -0.43 -2.72 16 23 C -0.21 -2.03 10.91 -39.70 -0.43 -2.47 16 24 C -0.05 -0.41 12.09 29.42 0.36 -0.06 16 25 O -0.18 -2.00 10.36 5.72 0.06 -1.94 16 26 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 27 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 31 H 0.01 0.13 6.87 -51.93 -0.36 -0.22 16 32 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.40 6.42 6.16 -40.82 -0.25 6.17 16 36 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.11 1.06 7.96 -51.93 -0.41 0.64 16 38 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.15 1.06 8.06 -52.48 -0.42 0.63 16 40 H 0.20 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -29.24 332.58 -7.42 -36.67 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.75 Total: 6.78 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -2.03 Total: -15.10 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.22 Total: -35.90 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.15 Total: -13.13 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.24 -7.42 -36.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863923678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.357 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds