Wall clock time and date at job start Mon Mar 30 2020 01:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47170 * 2 1 4 4 C 1.50701 * 109.46611 * 240.00045 * 2 1 3 5 5 H 1.07999 * 119.99992 * 239.99766 * 4 2 1 6 6 C 1.37875 * 120.00038 * 60.00387 * 4 2 1 7 7 N 1.31514 * 120.00041 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00004 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47274 * 90.00144 * 8 6 4 10 10 H 1.48504 * 109.47383 * 209.99816 * 8 6 4 11 11 H 1.48502 * 109.47297 * 329.99779 * 8 6 4 12 12 C 1.53002 * 109.46828 * 120.00291 * 2 1 3 13 13 N 1.46494 * 109.47001 * 299.99604 * 12 2 1 14 14 C 1.34784 * 119.99635 * 180.02562 * 13 12 2 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 12 17 17 H 1.09003 * 115.54880 * 34.27168 * 16 14 13 18 18 C 1.53003 * 117.49685 * 248.61175 * 16 14 13 19 19 C 1.52993 * 117.49869 * 179.97438 * 16 14 13 20 20 H 1.08999 * 117.49884 * 359.97438 * 19 16 14 21 21 C 1.50703 * 117.49649 * 214.97633 * 19 16 14 22 22 C 1.34519 * 125.78733 * 119.99612 * 21 19 16 23 23 C 1.41379 * 106.83943 * 179.97438 * 22 21 19 24 24 C 1.34513 * 106.84382 * 0.02562 * 23 22 21 25 25 O 1.34302 * 108.41767 * 359.72842 * 24 23 22 26 26 H 1.09005 * 109.46707 * 300.00089 * 1 2 3 27 27 H 1.08998 * 109.47134 * 59.99558 * 1 2 3 28 28 H 1.08999 * 109.47484 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46624 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46996 * 300.00522 * 3 2 1 31 31 H 1.08996 * 109.46790 * 60.00298 * 3 2 1 32 32 H 0.97001 * 120.00302 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46767 * 179.97438 * 12 2 1 34 34 H 1.09002 * 109.47113 * 60.00010 * 12 2 1 35 35 H 0.96995 * 120.00292 * 0.27801 * 13 12 2 36 36 H 1.08992 * 117.49885 * 359.97438 * 18 16 14 37 37 H 1.09000 * 117.49751 * 145.00134 * 18 16 14 38 38 H 1.07997 * 126.58200 * 0.04002 * 22 21 19 39 39 H 1.08009 * 126.58243 * 179.97438 * 23 22 21 40 40 H 1.08000 * 125.79628 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 1.3445 -2.1614 -4.4124 10 1 2.4871 -0.1402 -5.1121 11 1 3.6306 -1.7566 -3.7121 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4910 3.6695 15 8 2.5749 -1.4771 3.7807 16 6 1.3750 0.2190 4.9000 17 1 0.3827 0.6620 4.8147 18 6 2.4042 0.9524 5.7625 19 6 1.7792 -0.3528 6.2603 20 1 2.4085 -1.2428 6.2652 21 6 0.7749 -0.2605 7.3801 22 6 0.2486 -1.3001 8.0523 23 6 -0.6412 -0.7606 9.0094 24 6 -0.6058 0.5762 8.8646 25 8 0.2578 0.8737 7.8800 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 0.7087 1.1614 -3.4843 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7490 1.2492 35 1 0.9908 0.7556 2.3564 36 1 3.4449 0.9209 5.4401 37 1 2.0889 1.8776 6.2448 38 1 0.4650 -2.3460 7.8924 39 1 -1.2360 -1.3154 9.7201 40 1 -1.1719 1.2897 9.4450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863923678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:20 Heat of formation + Delta-G solvation = -21.464057 kcal Electronic energy + Delta-G solvation = -20989.003386 eV Core-core repulsion = 17770.454293 eV Total energy + Delta-G solvation = -3218.549093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.50760 -41.02542 -38.50687 -37.29523 -35.00095 -33.90851 -32.73785 -30.45693 -27.75712 -27.56655 -27.15146 -24.66811 -24.11298 -22.60359 -21.37898 -20.92438 -20.57390 -18.82496 -18.17626 -17.70507 -16.95879 -16.70001 -16.53730 -16.30747 -15.78093 -15.29168 -14.79598 -14.60209 -14.11156 -14.00539 -13.75057 -13.72799 -13.40892 -13.20232 -13.09217 -12.89374 -12.69575 -12.60727 -12.26334 -12.14371 -12.02406 -11.61765 -11.48854 -11.28335 -10.90302 -10.81247 -10.69046 -10.40326 -9.96325 -9.28734 -8.02776 -6.18689 0.69562 1.42275 1.45222 1.48675 1.53340 1.70749 1.98495 2.30024 2.48885 2.83808 3.20862 3.48413 3.60795 3.78318 4.05332 4.12846 4.18647 4.36859 4.43166 4.50552 4.64574 4.71211 4.84742 4.90417 4.98923 5.03753 5.05562 5.06700 5.11470 5.19141 5.21114 5.35997 5.57810 5.60577 5.66731 5.67022 6.14642 6.21101 6.21222 6.42953 6.64199 6.85638 7.27537 7.49182 8.96150 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041050 B = 0.003094 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.925115 B = 9047.913734 C = 9164.941538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.147 3.853 13 N -0.704 5.704 14 C 0.534 3.466 15 O -0.589 6.589 16 C -0.176 4.176 17 H 0.142 0.858 18 C -0.119 4.119 19 C -0.051 4.051 20 H 0.136 0.864 21 C 0.001 3.999 22 C -0.216 4.216 23 C -0.227 4.227 24 C -0.037 4.037 25 O -0.185 6.185 26 H 0.037 0.963 27 H 0.063 0.937 28 H 0.017 0.983 29 H 0.019 0.981 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.260 0.740 33 H 0.040 0.960 34 H 0.038 0.962 35 H 0.410 0.590 36 H 0.110 0.890 37 H 0.130 0.870 38 H 0.151 0.849 39 H 0.169 0.831 40 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.604 3.387 20.803 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.569 4.569 5 H 0.063 0.937 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.201 1.201 12 C 0.023 3.977 13 N -0.355 5.355 14 C 0.322 3.678 15 O -0.471 6.471 16 C -0.197 4.197 17 H 0.160 0.840 18 C -0.156 4.156 19 C -0.070 4.070 20 H 0.153 0.847 21 C -0.049 4.049 22 C -0.236 4.236 23 C -0.246 4.246 24 C -0.104 4.104 25 O -0.082 6.082 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.247 0.753 36 H 0.128 0.872 37 H 0.148 0.852 38 H 0.169 0.831 39 H 0.186 0.814 40 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -3.118 3.102 20.589 21.053 hybrid contribution -0.027 -0.647 -1.197 1.361 sum -3.146 2.455 19.392 19.798 Atomic orbital electron populations 1.21685 0.97193 0.98637 1.00429 1.18352 0.93189 0.93096 0.90254 1.21673 0.97992 0.97776 1.00455 1.21287 1.31770 1.12192 0.91617 0.93726 1.25450 0.95141 0.95577 1.00972 1.69905 1.36987 1.23265 1.23628 0.85762 0.78664 0.78493 0.79904 1.20527 1.20777 1.20060 1.21299 0.97128 0.95052 0.84177 1.46055 1.52396 1.31929 1.05095 1.20073 0.79444 0.83612 0.84676 1.90648 1.40686 1.28327 1.87419 1.22323 1.02957 1.05654 0.88736 0.84022 1.23178 0.98064 0.95750 0.98615 1.20388 0.97941 1.00803 0.87850 0.84654 1.21326 1.00447 0.83995 0.99097 1.21860 1.01733 1.00266 0.99703 1.22167 1.04012 0.95043 1.03400 1.24836 0.95338 0.97928 0.92253 1.83962 1.47606 1.33874 1.42737 0.94447 0.91843 0.96377 0.96206 0.91896 0.94347 0.93007 0.94137 0.94371 0.75288 0.87183 0.85176 0.83136 0.81352 0.74262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.08 71.98 0.58 -4.83 16 2 C 0.05 2.39 0.50 -52.92 -0.03 2.36 16 3 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 4 C -0.53 -28.09 8.01 25.60 0.21 -27.89 16 5 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 6 C 0.03 1.50 5.15 84.65 0.44 1.93 16 7 N -0.90 -47.92 9.35 21.45 0.20 -47.72 16 8 Si 0.94 42.62 29.54 68.60 2.03 44.64 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.15 6.27 4.50 86.38 0.39 6.66 16 13 N -0.70 -24.27 4.96 -463.05 -2.30 -26.56 16 14 C 0.53 17.93 7.61 87.66 0.67 18.59 16 15 O -0.59 -24.29 16.26 -3.03 -0.05 -24.34 16 16 C -0.18 -4.30 5.89 -11.54 -0.07 -4.37 16 17 H 0.14 2.99 8.14 -2.39 -0.02 2.97 16 18 C -0.12 -2.39 9.87 30.61 0.30 -2.09 16 19 C -0.05 -1.20 5.75 -11.53 -0.07 -1.26 16 20 H 0.14 3.45 7.67 -2.39 -0.02 3.43 16 21 C 0.00 0.02 6.80 24.83 0.17 0.19 16 22 C -0.22 -4.61 10.81 22.19 0.24 -4.37 16 23 C -0.23 -3.81 10.91 22.19 0.24 -3.57 16 24 C -0.04 -0.55 12.09 66.97 0.81 0.26 16 25 O -0.19 -3.75 10.36 -2.46 -0.03 -3.77 16 26 H 0.04 1.39 6.86 -2.38 -0.02 1.37 16 27 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 31 H 0.04 1.41 6.87 -2.39 -0.02 1.39 16 32 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 33 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.41 12.30 6.16 -92.71 -0.57 11.73 16 36 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.13 2.10 7.96 -2.39 -0.02 2.09 16 38 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.24 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -63.13 332.58 4.79 -58.34 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.47 Total: 22.55 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 4.46 Total: -23.14 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -2.10 Total: -74.28 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.07 Total: -28.11 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -63.13 4.79 -58.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863923678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.877 kcal (2) G-P(sol) polarization free energy of solvation -63.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds