Wall clock time and date at job start Mon Mar 30 2020 02:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47054 * 2 1 4 4 H 1.09001 * 109.47550 * 305.00126 * 3 2 1 5 5 C 1.52998 * 109.47349 * 65.00043 * 3 2 1 6 6 C 1.53006 * 109.47118 * 185.00331 * 3 2 1 7 7 O 1.42902 * 109.46981 * 175.00218 * 6 3 2 8 8 N 1.41600 * 113.99748 * 179.97438 * 7 6 3 9 9 C 1.34774 * 120.00279 * 179.97438 * 8 7 6 10 10 O 1.21618 * 119.99610 * 359.97438 * 9 8 7 11 11 C 1.47428 * 120.00477 * 180.02562 * 9 8 7 12 12 C 1.39232 * 120.28289 * 357.04276 * 11 9 8 13 13 C 1.38215 * 120.09334 * 180.27999 * 12 11 9 14 14 C 1.38826 * 120.67954 * 359.72191 * 13 12 11 15 15 C 1.37600 * 120.56680 * 359.97438 * 14 13 12 16 16 C 1.40709 * 119.88058 * 0.02562 * 15 14 13 17 17 C 1.40892 * 120.32698 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00405 * 145.84398 * 17 16 15 19 19 C 1.40277 * 119.99993 * 325.84525 * 17 16 15 20 20 N 1.30628 * 119.99520 * 340.94454 * 19 17 16 21 21 Si 1.86792 * 120.00155 * 160.94265 * 19 17 16 22 22 H 1.48505 * 109.47280 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.47490 * 299.99866 * 21 19 17 24 24 H 1.48504 * 109.47093 * 60.00155 * 21 19 17 25 25 H 1.09004 * 109.47166 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.46902 * 299.99873 * 1 2 3 27 27 H 1.08994 * 109.47408 * 60.00226 * 1 2 3 28 28 H 1.08997 * 109.46723 * 239.99906 * 2 1 3 29 29 H 1.09001 * 109.47329 * 120.00176 * 2 1 3 30 30 H 1.09003 * 109.47067 * 60.00468 * 5 3 2 31 31 H 1.09004 * 109.47142 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.47320 * 299.99906 * 5 3 2 33 33 H 1.08997 * 109.47219 * 54.99981 * 6 3 2 34 34 H 1.09006 * 109.46659 * 294.99851 * 6 3 2 35 35 H 0.97004 * 119.99995 * 0.02562 * 8 7 6 36 36 H 1.07999 * 119.94843 * 0.02562 * 12 11 9 37 37 H 1.08006 * 119.66064 * 179.74303 * 13 12 11 38 38 H 1.07994 * 119.72040 * 180.02562 * 14 13 12 39 39 H 1.07999 * 120.05892 * 180.02562 * 15 14 13 40 40 H 0.96994 * 120.00612 * 354.75683 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5648 1.4443 -0.1258 7 8 4.0315 2.7899 -0.2429 8 7 5.4377 2.9032 -0.3648 9 6 6.0081 4.1185 -0.4833 10 8 5.3149 5.1178 -0.4859 11 6 7.4721 4.2365 -0.6109 12 6 8.2761 3.1016 -0.5480 13 6 9.6486 3.2174 -0.6622 14 6 10.2419 4.4589 -0.8461 15 6 9.4732 5.5979 -0.9184 16 6 8.0736 5.5075 -0.8050 17 6 7.2774 6.6676 -0.8783 18 1 6.2980 6.6226 -1.3309 19 6 7.7571 7.8811 -0.3634 20 7 8.7411 7.8825 0.4958 21 14 6.9887 9.4948 -0.9062 22 1 7.6700 10.6226 -0.2212 23 1 7.1385 9.6447 -2.3760 24 1 5.5464 9.5001 -0.5525 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.0700 1.5875 2.1492 31 1 1.9990 3.1541 1.3075 32 1 0.5490 2.1252 1.3969 33 1 3.8570 0.8800 -1.0114 34 1 4.0030 0.9835 0.7596 35 1 5.9904 2.1060 -0.3639 36 1 7.8268 2.1298 -0.4056 37 1 10.2660 2.3328 -0.6083 38 1 11.3158 4.5315 -0.9338 39 1 9.9433 6.5596 -1.0620 40 1 9.0895 7.0435 0.8355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868523307.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:16 Heat of formation + Delta-G solvation = -35.006986 kcal Electronic energy + Delta-G solvation = -21072.796347 eV Core-core repulsion = 17853.659989 eV Total energy + Delta-G solvation = -3219.136358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.97400 -37.93545 -36.78523 -35.47851 -34.03055 -31.82421 -30.18356 -29.60039 -28.97148 -26.65437 -25.23286 -23.40699 -22.53251 -21.01366 -20.38426 -19.50267 -18.34525 -17.38597 -16.29900 -15.86644 -14.94283 -14.84399 -14.60187 -14.39743 -14.06387 -13.84485 -13.62248 -13.51139 -12.93216 -12.65741 -12.41596 -12.23761 -12.05684 -11.94572 -11.76786 -11.19037 -11.04885 -10.96325 -10.92111 -10.78870 -10.75894 -10.49343 -10.35954 -10.21437 -9.66559 -9.10884 -8.57014 -8.23673 -7.85921 -7.66424 -7.18740 -4.51434 2.18044 2.48313 2.69240 3.21180 3.31101 3.42058 4.02938 4.05052 4.52828 4.60462 4.64197 4.68461 5.04477 5.10042 5.25003 5.30419 5.40501 5.46693 5.49322 5.58443 5.74461 5.78346 5.81271 5.84271 5.87883 5.96778 6.09174 6.18070 6.30605 6.38713 6.65240 6.91753 7.19954 7.40712 7.44859 7.53483 7.65758 7.82856 8.02671 8.16693 8.24209 8.66390 8.80700 9.35562 10.00511 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019143 B = 0.004258 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.354410 B = 6574.211307 C = 7817.293426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.085 4.085 4 H 0.081 0.919 5 C -0.149 4.149 6 C 0.037 3.963 7 O -0.150 6.150 8 N -0.614 5.614 9 C 0.575 3.425 10 O -0.518 6.518 11 C -0.257 4.257 12 C -0.044 4.044 13 C -0.258 4.258 14 C -0.075 4.075 15 C -0.197 4.197 16 C 0.122 3.878 17 C -0.464 4.464 18 H 0.107 0.893 19 C 0.032 3.968 20 N -0.790 5.790 21 Si 1.071 2.929 22 H -0.274 1.274 23 H -0.273 1.273 24 H -0.271 1.271 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.396 0.604 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.248 -12.137 -0.286 14.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.104 4.104 4 H 0.100 0.900 5 C -0.206 4.206 6 C -0.041 4.041 7 O -0.153 6.153 8 N -0.320 5.320 9 C 0.369 3.631 10 O -0.394 6.394 11 C -0.262 4.262 12 C -0.063 4.063 13 C -0.277 4.277 14 C -0.094 4.094 15 C -0.216 4.216 16 C 0.117 3.883 17 C -0.490 4.490 18 H 0.125 0.875 19 C -0.190 4.190 20 N -0.413 5.413 21 Si 0.894 3.106 22 H -0.199 1.199 23 H -0.199 1.199 24 H -0.197 1.197 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.236 0.764 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.741 -9.557 -0.074 12.952 hybrid contribution 0.248 -2.698 -0.052 2.710 sum -8.493 -12.256 -0.126 14.911 Atomic orbital electron populations 1.21799 0.95325 1.01586 1.02256 1.21501 0.96363 0.95323 1.02198 1.21100 0.92330 0.96891 1.00113 0.90024 1.21866 1.01067 1.01649 0.96019 1.22964 0.95388 0.85279 1.00464 1.90530 1.04294 1.24146 1.96372 1.47943 0.93658 1.09574 1.80848 1.18504 0.88028 0.80483 0.76043 1.90698 1.63572 1.35157 1.49938 1.19083 0.88670 0.95290 1.23189 1.20709 0.94005 0.95244 0.96359 1.20235 0.93915 0.96423 1.17120 1.20757 0.97727 0.93085 0.97789 1.21251 0.93901 0.97382 1.09089 1.17440 0.91490 0.91514 0.87874 1.21253 1.04681 0.92921 1.30181 0.87521 1.27311 0.93801 1.04604 0.93328 1.70390 1.17842 1.34347 1.18703 0.83552 0.76769 0.73154 0.77162 1.19873 1.19855 1.19664 0.92710 0.92257 0.92572 0.91800 0.91728 0.92820 0.91501 0.92381 0.92726 0.92685 0.76423 0.89218 0.88714 0.88686 0.87296 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.67 37.16 0.36 -0.79 16 2 C -0.12 -0.98 5.40 -26.73 -0.14 -1.12 16 3 C -0.08 -0.94 2.63 -90.62 -0.24 -1.17 16 4 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 5 C -0.15 -1.70 8.85 37.16 0.33 -1.37 16 6 C 0.04 0.48 5.61 37.16 0.21 0.69 16 7 O -0.15 -2.81 10.64 -29.61 -0.32 -3.12 16 8 N -0.61 -12.05 6.34 30.43 0.19 -11.86 16 9 C 0.57 14.08 7.88 -12.52 -0.10 13.98 16 10 O -0.52 -14.69 13.96 -12.88 -0.18 -14.87 16 11 C -0.26 -6.28 5.92 -104.37 -0.62 -6.90 16 12 C -0.04 -0.92 9.53 -39.22 -0.37 -1.29 16 13 C -0.26 -5.26 10.03 -39.37 -0.39 -5.66 16 14 C -0.07 -1.61 10.01 -39.60 -0.40 -2.01 16 15 C -0.20 -4.84 7.86 -38.88 -0.31 -5.14 16 16 C 0.12 3.23 5.18 -106.54 -0.55 2.67 16 17 C -0.46 -12.83 7.66 -37.81 -0.29 -13.12 16 18 H 0.11 3.10 5.91 -52.49 -0.31 2.79 16 19 C 0.03 0.82 5.04 -17.30 -0.09 0.74 16 20 N -0.79 -21.06 12.57 55.56 0.70 -20.36 16 21 Si 1.07 22.60 29.98 -169.99 -5.10 17.51 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.44 6.57 -51.92 -0.34 0.10 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.94 7.82 -51.93 -0.41 0.53 16 32 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.40 6.33 6.58 -40.82 -0.27 6.06 16 36 H 0.09 1.51 6.41 -52.49 -0.34 1.17 16 37 H 0.09 1.66 8.06 -52.48 -0.42 1.23 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.11 2.71 6.93 -52.49 -0.36 2.35 16 40 H 0.30 8.11 6.54 -40.82 -0.27 7.85 16 LS Contribution 330.63 15.07 4.98 4.98 Total: -1.00 -30.90 330.63 -7.98 -38.87 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.66 Total: 9.33 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -2.60 Total: -20.49 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.89 Total: -32.21 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.50 Total: -17.99 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.10 Total: 17.51 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.90 -7.98 -38.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868523307.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.868 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds