Wall clock time and date at job start Mon Mar 30 2020 02:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47054 * 2 1 4 4 H 1.09001 * 109.47550 * 305.00126 * 3 2 1 5 5 C 1.52998 * 109.47349 * 65.00043 * 3 2 1 6 6 C 1.53006 * 109.47118 * 185.00331 * 3 2 1 7 7 O 1.42902 * 109.46981 * 175.00218 * 6 3 2 8 8 N 1.41600 * 113.99748 * 179.97438 * 7 6 3 9 9 C 1.34774 * 120.00279 * 179.97438 * 8 7 6 10 10 O 1.21618 * 119.99610 * 359.97438 * 9 8 7 11 11 C 1.47428 * 120.00477 * 180.02562 * 9 8 7 12 12 C 1.39232 * 120.28289 * 357.04276 * 11 9 8 13 13 C 1.38215 * 120.09334 * 180.27999 * 12 11 9 14 14 C 1.38826 * 120.67954 * 359.72191 * 13 12 11 15 15 C 1.37600 * 120.56680 * 359.97438 * 14 13 12 16 16 C 1.40709 * 119.88058 * 0.02562 * 15 14 13 17 17 C 1.40892 * 120.32698 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00405 * 145.84398 * 17 16 15 19 19 C 1.40277 * 119.99993 * 325.84525 * 17 16 15 20 20 N 1.30628 * 119.99520 * 340.94454 * 19 17 16 21 21 Si 1.86792 * 120.00155 * 160.94265 * 19 17 16 22 22 H 1.48505 * 109.47280 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.47490 * 299.99866 * 21 19 17 24 24 H 1.48504 * 109.47093 * 60.00155 * 21 19 17 25 25 H 1.09004 * 109.47166 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.46902 * 299.99873 * 1 2 3 27 27 H 1.08994 * 109.47408 * 60.00226 * 1 2 3 28 28 H 1.08997 * 109.46723 * 239.99906 * 2 1 3 29 29 H 1.09001 * 109.47329 * 120.00176 * 2 1 3 30 30 H 1.09003 * 109.47067 * 60.00468 * 5 3 2 31 31 H 1.09004 * 109.47142 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.47320 * 299.99906 * 5 3 2 33 33 H 1.08997 * 109.47219 * 54.99981 * 6 3 2 34 34 H 1.09006 * 109.46659 * 294.99851 * 6 3 2 35 35 H 0.97004 * 119.99995 * 0.02562 * 8 7 6 36 36 H 1.07999 * 119.94843 * 0.02562 * 12 11 9 37 37 H 1.08006 * 119.66064 * 179.74303 * 13 12 11 38 38 H 1.07994 * 119.72040 * 180.02562 * 14 13 12 39 39 H 1.07999 * 120.05892 * 180.02562 * 15 14 13 40 40 H 0.96994 * 120.00612 * 354.75683 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5648 1.4443 -0.1258 7 8 4.0315 2.7899 -0.2429 8 7 5.4377 2.9032 -0.3648 9 6 6.0081 4.1185 -0.4833 10 8 5.3149 5.1178 -0.4859 11 6 7.4721 4.2365 -0.6109 12 6 8.2761 3.1016 -0.5480 13 6 9.6486 3.2174 -0.6622 14 6 10.2419 4.4589 -0.8461 15 6 9.4732 5.5979 -0.9184 16 6 8.0736 5.5075 -0.8050 17 6 7.2774 6.6676 -0.8783 18 1 6.2980 6.6226 -1.3309 19 6 7.7571 7.8811 -0.3634 20 7 8.7411 7.8825 0.4958 21 14 6.9887 9.4948 -0.9062 22 1 7.6700 10.6226 -0.2212 23 1 7.1385 9.6447 -2.3760 24 1 5.5464 9.5001 -0.5525 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.0700 1.5875 2.1492 31 1 1.9990 3.1541 1.3075 32 1 0.5490 2.1252 1.3969 33 1 3.8570 0.8800 -1.0114 34 1 4.0030 0.9835 0.7596 35 1 5.9904 2.1060 -0.3639 36 1 7.8268 2.1298 -0.4056 37 1 10.2660 2.3328 -0.6083 38 1 11.3158 4.5315 -0.9338 39 1 9.9433 6.5596 -1.0620 40 1 9.0895 7.0435 0.8355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868523307.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:15 Heat of formation + Delta-G solvation = -52.576344 kcal Electronic energy + Delta-G solvation = -21073.558211 eV Core-core repulsion = 17853.659989 eV Total energy + Delta-G solvation = -3219.898223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.76235 -39.29437 -38.41835 -36.75781 -35.87402 -33.47929 -31.65479 -31.15992 -30.36952 -27.70169 -27.09317 -24.45942 -24.12060 -22.82333 -21.67443 -20.85321 -20.12789 -18.97259 -18.01236 -16.97875 -16.60798 -16.20423 -16.10250 -15.83787 -15.61418 -15.33431 -15.12437 -14.81892 -14.46850 -14.10971 -13.87232 -13.77056 -13.15253 -12.97859 -12.93149 -12.74285 -12.67322 -12.51986 -12.04920 -11.96719 -11.95980 -11.84172 -11.62634 -11.49021 -11.47091 -10.98477 -10.47570 -9.91255 -9.63768 -9.52826 -9.13664 -6.50274 0.34578 0.88740 0.99445 1.46769 1.61827 1.77250 2.18809 2.30348 2.71220 3.49733 3.51912 3.76574 3.80335 4.06888 4.11043 4.19875 4.31935 4.32483 4.42943 4.55519 4.59054 4.68972 4.73223 4.77044 4.85355 5.00099 5.07216 5.08836 5.16221 5.16929 5.38034 5.38732 5.48012 5.61149 5.65887 5.82684 5.86353 5.95924 6.18745 6.30386 6.54762 6.77988 6.85249 7.56529 8.02107 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019143 B = 0.004258 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.354410 B = 6574.211307 C = 7817.293426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.082 4.082 4 H 0.069 0.931 5 C -0.148 4.148 6 C 0.028 3.972 7 O -0.177 6.177 8 N -0.595 5.595 9 C 0.568 3.432 10 O -0.570 6.570 11 C -0.275 4.275 12 C -0.041 4.041 13 C -0.239 4.239 14 C -0.068 4.068 15 C -0.221 4.221 16 C 0.098 3.902 17 C -0.512 4.512 18 H 0.079 0.921 19 C -0.001 4.001 20 N -0.813 5.813 21 Si 1.114 2.886 22 H -0.261 1.261 23 H -0.257 1.257 24 H -0.275 1.275 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.415 0.585 36 H 0.137 0.863 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.093 0.907 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.801 -15.539 -0.341 17.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.102 4.102 4 H 0.088 0.912 5 C -0.205 4.205 6 C -0.049 4.049 7 O -0.181 6.181 8 N -0.300 5.300 9 C 0.363 3.637 10 O -0.449 6.449 11 C -0.280 4.280 12 C -0.060 4.060 13 C -0.258 4.258 14 C -0.087 4.087 15 C -0.241 4.241 16 C 0.094 3.906 17 C -0.540 4.540 18 H 0.097 0.903 19 C -0.217 4.217 20 N -0.436 5.436 21 Si 0.932 3.068 22 H -0.185 1.185 23 H -0.182 1.182 24 H -0.200 1.200 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.259 0.741 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.147 0.853 39 H 0.111 0.889 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.274 -13.046 -0.132 15.449 hybrid contribution 0.101 -2.030 -0.028 2.033 sum -8.173 -15.076 -0.160 17.149 Atomic orbital electron populations 1.21812 0.94640 1.02485 1.02102 1.21471 0.96870 0.93075 1.03214 1.21159 0.90958 0.98787 0.99294 0.91248 1.21855 1.02201 0.99654 0.96763 1.23380 0.96474 0.82898 1.02167 1.90552 1.02882 1.28132 1.96548 1.47384 0.94993 1.08892 1.78764 1.18623 0.88263 0.81120 0.75718 1.90674 1.64741 1.37317 1.52216 1.19407 0.89418 0.96033 1.23132 1.21158 0.94219 0.95948 0.94661 1.20839 0.94181 0.97387 1.13358 1.21208 0.99395 0.92566 0.95505 1.21213 0.93489 0.98160 1.11193 1.17833 0.92648 0.92353 0.87743 1.21161 1.04273 0.94865 1.33659 0.90342 1.28459 0.93645 1.07113 0.92449 1.70495 1.19695 1.33178 1.20271 0.83039 0.75748 0.70206 0.77832 1.18524 1.18166 1.20024 0.91280 0.92301 0.92926 0.90827 0.90637 0.91868 0.95007 0.90719 0.90755 0.90950 0.74104 0.84569 0.84049 0.85306 0.88873 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.67 71.98 0.70 -1.23 16 2 C -0.11 -1.52 5.40 30.59 0.17 -1.35 16 3 C -0.08 -1.69 2.63 -10.80 -0.03 -1.72 16 4 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 5 C -0.15 -3.25 8.85 71.98 0.64 -2.61 16 6 C 0.03 0.66 5.61 71.98 0.40 1.06 16 7 O -0.18 -6.54 10.64 -21.44 -0.23 -6.77 16 8 N -0.60 -22.74 6.34 -175.88 -1.12 -23.85 16 9 C 0.57 28.37 7.88 86.66 0.68 29.05 16 10 O -0.57 -34.08 13.96 13.26 0.19 -33.90 16 11 C -0.27 -13.42 5.92 -19.70 -0.12 -13.54 16 12 C -0.04 -1.57 9.53 22.50 0.21 -1.36 16 13 C -0.24 -8.64 10.03 22.41 0.22 -8.41 16 14 C -0.07 -2.77 10.01 22.26 0.22 -2.54 16 15 C -0.22 -11.01 7.86 22.72 0.18 -10.83 16 16 C 0.10 5.40 5.18 -21.11 -0.11 5.29 16 17 C -0.51 -30.15 7.66 23.42 0.18 -29.97 16 18 H 0.08 4.95 5.91 -2.91 -0.02 4.93 16 19 C 0.00 -0.04 5.04 85.37 0.43 0.39 16 20 N -0.81 -45.49 12.57 21.88 0.27 -45.21 16 21 Si 1.11 47.88 29.98 68.60 2.06 49.94 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.74 6.57 -2.38 -0.02 0.73 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.03 0.91 7.82 -2.39 -0.02 0.89 16 32 H 0.07 1.36 6.56 -2.39 -0.02 1.35 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.42 12.04 6.58 -92.71 -0.61 11.43 16 36 H 0.14 3.85 6.41 -2.91 -0.02 3.83 16 37 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 38 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 39 H 0.09 4.84 6.93 -2.91 -0.02 4.82 16 40 H 0.28 16.29 6.54 -92.71 -0.61 15.69 16 Total: -1.00 -72.78 330.63 5.55 -67.23 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: 0.60 Total: 30.34 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 3.78 Total: -37.77 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -0.84 Total: -69.06 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -0.04 Total: -40.66 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.06 Total: 49.94 kcal Total: -72.78 5.55 -67.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868523307.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.653 kcal (2) G-P(sol) polarization free energy of solvation -72.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds