Wall clock time and date at job start Mon Mar 30 2020 02:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47270 * 2 1 4 4 H 1.08996 * 109.47486 * 54.99378 * 3 2 1 5 5 C 1.53007 * 109.46616 * 294.99983 * 3 2 1 6 6 C 1.52991 * 109.47363 * 175.00136 * 3 2 1 7 7 O 1.42904 * 109.47444 * 184.99753 * 6 3 2 8 8 N 1.41599 * 113.99911 * 180.02562 * 7 6 3 9 9 C 1.34776 * 119.99736 * 179.97438 * 8 7 6 10 10 O 1.21610 * 120.00078 * 0.02562 * 9 8 7 11 11 C 1.47435 * 120.00250 * 179.97438 * 9 8 7 12 12 C 1.39225 * 120.27795 * 354.02297 * 11 9 8 13 13 C 1.38225 * 120.09157 * 179.97438 * 12 11 9 14 14 C 1.38827 * 120.67220 * 0.02562 * 13 12 11 15 15 C 1.37603 * 120.57257 * 359.97438 * 14 13 12 16 16 C 1.40700 * 119.88088 * 0.02562 * 15 14 13 17 17 C 1.40887 * 120.32726 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00138 * 143.93862 * 17 16 15 19 19 C 1.40271 * 119.99978 * 323.93824 * 17 16 15 20 20 N 1.30626 * 120.00041 * 350.11785 * 19 17 16 21 21 Si 1.86800 * 120.00189 * 170.12140 * 19 17 16 22 22 H 1.48501 * 109.47358 * 89.99732 * 21 19 17 23 23 H 1.48496 * 109.47220 * 209.99749 * 21 19 17 24 24 H 1.48500 * 109.46981 * 330.00125 * 21 19 17 25 25 H 1.08998 * 109.47033 * 60.00165 * 1 2 3 26 26 H 1.08997 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46904 * 300.00235 * 1 2 3 28 28 H 1.09000 * 109.46904 * 239.99765 * 2 1 3 29 29 H 1.08998 * 109.47033 * 119.99835 * 2 1 3 30 30 H 1.08997 * 109.47606 * 299.99813 * 5 3 2 31 31 H 1.08999 * 109.47156 * 60.00284 * 5 3 2 32 32 H 1.09007 * 109.46723 * 180.02562 * 5 3 2 33 33 H 1.09008 * 109.47448 * 64.99533 * 6 3 2 34 34 H 1.09004 * 109.47521 * 305.00205 * 6 3 2 35 35 H 0.97000 * 120.00261 * 359.97438 * 8 7 6 36 36 H 1.07993 * 119.95486 * 0.25452 * 12 11 9 37 37 H 1.07995 * 119.66595 * 179.97438 * 13 12 11 38 38 H 1.08004 * 119.71372 * 179.97438 * 14 13 12 39 39 H 1.08001 * 120.05543 * 180.02562 * 15 14 13 40 40 H 0.97000 * 120.00188 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1264 -1.3075 6 6 3.5648 1.4443 0.1257 7 8 4.0315 2.7899 0.2427 8 7 5.4377 2.9031 0.3646 9 6 6.0082 4.1186 0.4820 10 8 5.3152 5.1179 0.4838 11 6 7.4723 4.2366 0.6094 12 6 8.2603 3.0956 0.7341 13 6 9.6326 3.2107 0.8528 14 6 10.2415 4.4583 0.8500 15 6 9.4892 5.6040 0.7284 16 6 8.0904 5.5144 0.6061 17 6 7.3109 6.6814 0.4816 18 1 6.4355 6.6812 -0.1509 19 6 7.6719 7.8436 1.1792 20 7 8.6087 7.7954 2.0882 21 14 6.8128 9.4603 0.8082 22 1 5.6233 9.6017 1.6859 23 1 7.7482 10.5865 1.0572 24 1 6.3838 9.4782 -0.6133 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0698 1.5874 -2.1493 31 1 0.5489 2.1251 -1.3970 32 1 1.9990 3.1540 -1.3077 33 1 4.0030 0.9835 -0.7597 34 1 3.8571 0.8800 1.0113 35 1 5.9904 2.1060 0.3636 36 1 7.7991 2.1191 0.7335 37 1 10.2372 2.3211 0.9495 38 1 11.3150 4.5303 0.9441 39 1 9.9716 6.5703 0.7268 40 1 8.8585 8.5991 2.5703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868523308.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:19 Heat of formation + Delta-G solvation = -29.559339 kcal Electronic energy + Delta-G solvation = -21032.326764 eV Core-core repulsion = 17813.426633 eV Total energy + Delta-G solvation = -3218.900131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.87319 -37.84702 -36.63431 -35.42998 -33.75374 -31.77731 -30.12667 -29.81737 -28.89895 -26.62392 -25.38933 -23.37620 -22.37667 -20.96617 -20.32908 -19.36968 -17.97342 -17.09424 -16.20448 -15.82233 -15.25728 -14.86516 -14.61127 -14.30010 -14.14034 -13.69356 -13.56292 -13.10622 -12.84706 -12.71392 -12.43546 -12.21823 -11.97444 -11.84662 -11.63295 -11.16000 -11.10139 -10.98535 -10.90073 -10.75736 -10.71386 -10.53897 -10.44279 -10.10756 -9.72364 -9.26151 -8.49756 -8.17517 -7.65071 -7.38903 -6.81697 -4.41092 2.31245 2.53749 2.78586 3.11533 3.19354 3.23807 3.99158 4.15723 4.56021 4.66058 4.67188 4.71115 5.06932 5.14125 5.27913 5.32999 5.49163 5.52032 5.56577 5.61325 5.76581 5.83237 5.86438 5.91336 5.96658 5.98896 6.20574 6.23516 6.32484 6.51286 6.88155 7.05364 7.17865 7.38746 7.50086 7.55868 7.80648 7.91829 8.12430 8.27764 8.63028 8.77125 8.85885 9.41993 10.14648 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018895 B = 0.004284 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.555163 B = 6534.667010 C = 7820.443695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.085 4.085 4 H 0.081 0.919 5 C -0.149 4.149 6 C 0.037 3.963 7 O -0.151 6.151 8 N -0.614 5.614 9 C 0.576 3.424 10 O -0.518 6.518 11 C -0.251 4.251 12 C -0.059 4.059 13 C -0.243 4.243 14 C -0.094 4.094 15 C -0.143 4.143 16 C 0.150 3.850 17 C -0.416 4.416 18 H 0.104 0.896 19 C 0.071 3.929 20 N -0.792 5.792 21 Si 0.918 3.082 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.259 1.259 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.396 0.604 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.578 -11.623 -3.212 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.105 4.105 4 H 0.100 0.900 5 C -0.206 4.206 6 C -0.041 4.041 7 O -0.154 6.154 8 N -0.320 5.320 9 C 0.370 3.630 10 O -0.393 6.393 11 C -0.256 4.256 12 C -0.078 4.078 13 C -0.262 4.262 14 C -0.113 4.113 15 C -0.163 4.163 16 C 0.145 3.855 17 C -0.444 4.444 18 H 0.122 0.878 19 C -0.148 4.148 20 N -0.417 5.417 21 Si 0.742 3.258 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.182 1.182 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.236 0.764 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.134 0.866 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.113 -10.541 -3.039 13.644 hybrid contribution -0.050 -0.170 0.104 0.206 sum -8.163 -10.711 -2.935 13.783 Atomic orbital electron populations 1.21798 0.95362 1.01565 1.02242 1.21502 0.96331 0.95356 1.02199 1.21099 0.92411 0.96861 1.00094 0.90035 1.21865 1.01026 1.01648 0.96033 1.22952 0.95320 0.85334 1.00467 1.90527 1.04456 1.24082 1.96354 1.47982 0.93550 1.09667 1.80832 1.18560 0.88066 0.80432 0.75932 1.90702 1.63617 1.35259 1.49716 1.19188 0.88302 0.94906 1.23240 1.20649 0.94034 0.95175 0.97906 1.20279 0.93959 0.96270 1.15685 1.20812 0.97844 0.93177 0.99492 1.21304 0.93468 0.97064 1.04419 1.17412 0.91603 0.90694 0.85754 1.20129 1.09399 0.93105 1.21810 0.87798 1.26096 0.94049 1.01071 0.93548 1.69704 1.24581 1.30930 1.16439 0.86140 0.79613 0.79499 0.80535 1.19224 1.20274 1.18237 0.92268 0.92729 0.92588 0.91730 0.91795 0.92822 0.92433 0.91496 0.92679 0.92740 0.76384 0.89337 0.88900 0.88880 0.86555 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 37.16 0.36 -0.80 16 2 C -0.12 -0.98 5.40 -26.73 -0.14 -1.13 16 3 C -0.08 -0.94 2.63 -90.62 -0.24 -1.18 16 4 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 5 C -0.15 -1.68 8.85 37.16 0.33 -1.35 16 6 C 0.04 0.48 5.61 37.15 0.21 0.69 16 7 O -0.15 -2.82 10.64 -29.62 -0.32 -3.14 16 8 N -0.61 -12.04 6.34 30.44 0.19 -11.85 16 9 C 0.58 14.09 7.86 -12.52 -0.10 13.99 16 10 O -0.52 -14.63 14.04 -12.88 -0.18 -14.81 16 11 C -0.25 -6.16 5.92 -104.37 -0.62 -6.78 16 12 C -0.06 -1.23 9.52 -39.22 -0.37 -1.61 16 13 C -0.24 -5.02 10.03 -39.37 -0.39 -5.42 16 14 C -0.09 -2.08 10.01 -39.60 -0.40 -2.47 16 15 C -0.14 -3.58 8.62 -38.88 -0.34 -3.92 16 16 C 0.15 4.01 5.47 -106.55 -0.58 3.43 16 17 C -0.42 -11.54 7.59 -37.82 -0.29 -11.82 16 18 H 0.10 3.00 6.04 -52.49 -0.32 2.69 16 19 C 0.07 1.84 5.23 -17.30 -0.09 1.74 16 20 N -0.79 -20.54 11.32 55.56 0.63 -19.91 16 21 Si 0.92 19.86 29.57 -169.99 -5.03 14.84 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 25 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 32 H 0.07 0.93 7.82 -51.93 -0.41 0.52 16 33 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.40 6.34 6.61 -40.82 -0.27 6.07 16 36 H 0.09 1.51 6.44 -52.49 -0.34 1.17 16 37 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 39 H 0.12 2.95 6.77 -52.49 -0.36 2.60 16 40 H 0.28 6.66 8.29 -40.82 -0.34 6.33 16 LS Contribution 332.00 15.07 5.00 5.00 Total: -1.00 -30.81 332.00 -8.09 -38.90 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.73 Total: 7.59 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -2.66 Total: -16.62 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.82 Total: -31.77 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.50 Total: -17.95 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.81 -8.09 -38.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868523308.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.342 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds