Wall clock time and date at job start Mon Mar 30 2020 02:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47270 * 2 1 4 4 H 1.08996 * 109.47486 * 54.99378 * 3 2 1 5 5 C 1.53007 * 109.46616 * 294.99983 * 3 2 1 6 6 C 1.52991 * 109.47363 * 175.00136 * 3 2 1 7 7 O 1.42904 * 109.47444 * 184.99753 * 6 3 2 8 8 N 1.41599 * 113.99911 * 180.02562 * 7 6 3 9 9 C 1.34776 * 119.99736 * 179.97438 * 8 7 6 10 10 O 1.21610 * 120.00078 * 0.02562 * 9 8 7 11 11 C 1.47435 * 120.00250 * 179.97438 * 9 8 7 12 12 C 1.39225 * 120.27795 * 354.02297 * 11 9 8 13 13 C 1.38225 * 120.09157 * 179.97438 * 12 11 9 14 14 C 1.38827 * 120.67220 * 0.02562 * 13 12 11 15 15 C 1.37603 * 120.57257 * 359.97438 * 14 13 12 16 16 C 1.40700 * 119.88088 * 0.02562 * 15 14 13 17 17 C 1.40887 * 120.32726 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00138 * 143.93862 * 17 16 15 19 19 C 1.40271 * 119.99978 * 323.93824 * 17 16 15 20 20 N 1.30626 * 120.00041 * 350.11785 * 19 17 16 21 21 Si 1.86800 * 120.00189 * 170.12140 * 19 17 16 22 22 H 1.48501 * 109.47358 * 89.99732 * 21 19 17 23 23 H 1.48496 * 109.47220 * 209.99749 * 21 19 17 24 24 H 1.48500 * 109.46981 * 330.00125 * 21 19 17 25 25 H 1.08998 * 109.47033 * 60.00165 * 1 2 3 26 26 H 1.08997 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46904 * 300.00235 * 1 2 3 28 28 H 1.09000 * 109.46904 * 239.99765 * 2 1 3 29 29 H 1.08998 * 109.47033 * 119.99835 * 2 1 3 30 30 H 1.08997 * 109.47606 * 299.99813 * 5 3 2 31 31 H 1.08999 * 109.47156 * 60.00284 * 5 3 2 32 32 H 1.09007 * 109.46723 * 180.02562 * 5 3 2 33 33 H 1.09008 * 109.47448 * 64.99533 * 6 3 2 34 34 H 1.09004 * 109.47521 * 305.00205 * 6 3 2 35 35 H 0.97000 * 120.00261 * 359.97438 * 8 7 6 36 36 H 1.07993 * 119.95486 * 0.25452 * 12 11 9 37 37 H 1.07995 * 119.66595 * 179.97438 * 13 12 11 38 38 H 1.08004 * 119.71372 * 179.97438 * 14 13 12 39 39 H 1.08001 * 120.05543 * 180.02562 * 15 14 13 40 40 H 0.97000 * 120.00188 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1264 -1.3075 6 6 3.5648 1.4443 0.1257 7 8 4.0315 2.7899 0.2427 8 7 5.4377 2.9031 0.3646 9 6 6.0082 4.1186 0.4820 10 8 5.3152 5.1179 0.4838 11 6 7.4723 4.2366 0.6094 12 6 8.2603 3.0956 0.7341 13 6 9.6326 3.2107 0.8528 14 6 10.2415 4.4583 0.8500 15 6 9.4892 5.6040 0.7284 16 6 8.0904 5.5144 0.6061 17 6 7.3109 6.6814 0.4816 18 1 6.4355 6.6812 -0.1509 19 6 7.6719 7.8436 1.1792 20 7 8.6087 7.7954 2.0882 21 14 6.8128 9.4603 0.8082 22 1 5.6233 9.6017 1.6859 23 1 7.7482 10.5865 1.0572 24 1 6.3838 9.4782 -0.6133 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0698 1.5874 -2.1493 31 1 0.5489 2.1251 -1.3970 32 1 1.9990 3.1540 -1.3077 33 1 4.0030 0.9835 -0.7597 34 1 3.8571 0.8800 1.0113 35 1 5.9904 2.1060 0.3636 36 1 7.7991 2.1191 0.7335 37 1 10.2372 2.3211 0.9495 38 1 11.3150 4.5303 0.9441 39 1 9.9716 6.5703 0.7268 40 1 8.8585 8.5991 2.5703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868523308.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:18 Heat of formation + Delta-G solvation = -46.990339 kcal Electronic energy + Delta-G solvation = -21033.082629 eV Core-core repulsion = 17813.426633 eV Total energy + Delta-G solvation = -3219.655996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.64115 -39.17656 -38.28324 -36.71231 -35.60723 -33.42189 -31.76924 -31.20156 -30.30645 -27.68107 -27.23008 -24.34475 -24.04787 -22.77383 -21.55013 -20.77792 -19.65971 -18.78356 -17.91074 -17.11025 -16.92815 -16.15879 -15.89905 -15.82279 -15.60761 -15.17594 -14.83983 -14.72483 -14.49628 -14.12820 -13.84477 -13.47201 -13.13820 -12.93435 -12.90703 -12.87081 -12.64865 -12.54723 -12.31540 -11.97259 -11.87866 -11.80479 -11.60338 -11.50322 -11.44375 -11.14608 -10.40372 -9.83750 -9.42218 -9.24140 -8.69484 -6.38322 0.47365 1.00297 1.05389 1.33499 1.46410 1.49407 2.21550 2.30002 2.76796 3.54277 3.68199 3.79624 3.83316 4.11341 4.19535 4.31333 4.34760 4.36680 4.57682 4.58755 4.61855 4.71235 4.79197 4.85463 5.02337 5.06308 5.09254 5.17989 5.18857 5.22030 5.31233 5.40665 5.49797 5.57372 5.78160 5.95301 6.00387 6.08315 6.32247 6.57599 6.71232 6.86046 6.96159 7.63530 8.29203 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018895 B = 0.004284 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.555163 B = 6534.667010 C = 7820.443695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.083 4.083 4 H 0.068 0.932 5 C -0.147 4.147 6 C 0.028 3.972 7 O -0.177 6.177 8 N -0.595 5.595 9 C 0.570 3.430 10 O -0.569 6.569 11 C -0.269 4.269 12 C -0.054 4.054 13 C -0.229 4.229 14 C -0.088 4.088 15 C -0.171 4.171 16 C 0.120 3.880 17 C -0.460 4.460 18 H 0.076 0.924 19 C 0.035 3.965 20 N -0.821 5.821 21 Si 0.977 3.023 22 H -0.273 1.273 23 H -0.253 1.253 24 H -0.264 1.264 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.416 0.584 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.196 -14.685 -3.234 16.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.102 4.102 4 H 0.086 0.914 5 C -0.204 4.204 6 C -0.049 4.049 7 O -0.182 6.182 8 N -0.301 5.301 9 C 0.364 3.636 10 O -0.449 6.449 11 C -0.274 4.274 12 C -0.073 4.073 13 C -0.248 4.248 14 C -0.107 4.107 15 C -0.191 4.191 16 C 0.116 3.884 17 C -0.489 4.489 18 H 0.094 0.906 19 C -0.181 4.181 20 N -0.447 5.447 21 Si 0.798 3.202 22 H -0.198 1.198 23 H -0.176 1.176 24 H -0.188 1.188 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.259 0.741 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.143 0.857 39 H 0.118 0.882 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.706 -13.678 -3.064 15.996 hybrid contribution -0.179 0.465 0.089 0.506 sum -7.885 -13.214 -2.975 15.672 Atomic orbital electron populations 1.21810 0.94684 1.02459 1.02083 1.21472 0.96833 0.93130 1.03208 1.21157 0.91036 0.98743 0.99311 0.91363 1.21853 1.02143 0.99708 0.96726 1.23365 0.96410 0.82964 1.02158 1.90547 1.03043 1.28041 1.96533 1.47420 0.94878 1.08994 1.78784 1.18652 0.88261 0.81063 0.75601 1.90674 1.64755 1.37384 1.52042 1.19485 0.89020 0.95608 1.23336 1.21086 0.94275 0.95897 0.96046 1.20838 0.94213 0.97204 1.12555 1.21231 0.99418 0.92783 0.97231 1.21248 0.93112 0.97787 1.06936 1.17789 0.92630 0.91601 0.86386 1.20057 1.09671 0.95218 1.23953 0.90572 1.26724 0.94776 1.03485 0.93071 1.69714 1.25817 1.31974 1.17182 0.85293 0.78693 0.76551 0.79661 1.19848 1.17647 1.18796 0.92260 0.91303 0.93002 0.90577 0.90901 0.91790 0.90800 0.94914 0.90858 0.90887 0.74094 0.84767 0.84370 0.85727 0.88176 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.67 71.98 0.70 -1.25 16 2 C -0.11 -1.54 5.40 30.59 0.17 -1.37 16 3 C -0.08 -1.71 2.63 -10.80 -0.03 -1.74 16 4 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 5 C -0.15 -3.21 8.85 71.98 0.64 -2.58 16 6 C 0.03 0.67 5.61 71.98 0.40 1.07 16 7 O -0.18 -6.57 10.64 -21.43 -0.23 -6.80 16 8 N -0.60 -22.83 6.34 -175.88 -1.11 -23.94 16 9 C 0.57 28.49 7.86 86.67 0.68 29.17 16 10 O -0.57 -33.94 14.04 13.29 0.19 -33.75 16 11 C -0.27 -13.27 5.92 -19.70 -0.12 -13.39 16 12 C -0.05 -2.12 9.52 22.50 0.21 -1.90 16 13 C -0.23 -8.52 10.03 22.41 0.22 -8.30 16 14 C -0.09 -3.68 10.01 22.26 0.22 -3.46 16 15 C -0.17 -8.71 8.62 22.72 0.20 -8.52 16 16 C 0.12 6.65 5.47 -21.11 -0.12 6.53 16 17 C -0.46 -27.11 7.59 23.41 0.18 -26.94 16 18 H 0.08 4.78 6.04 -2.91 -0.02 4.76 16 19 C 0.03 1.88 5.23 85.37 0.45 2.32 16 20 N -0.82 -44.27 11.32 21.88 0.25 -44.02 16 21 Si 0.98 42.69 29.57 68.60 2.03 44.72 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 25 H 0.06 0.75 6.56 -2.39 -0.02 0.74 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.34 6.56 -2.39 -0.02 1.32 16 32 H 0.03 0.93 7.82 -2.38 -0.02 0.91 16 33 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.42 12.15 6.61 -92.71 -0.61 11.53 16 36 H 0.13 3.89 6.44 -2.91 -0.02 3.88 16 37 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 38 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 39 H 0.10 5.30 6.77 -2.91 -0.02 5.28 16 40 H 0.29 14.11 8.29 -92.71 -0.77 13.34 16 Total: -1.00 -71.91 332.00 5.36 -66.56 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.43 Total: 27.58 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 3.80 Total: -30.35 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -0.87 Total: -67.97 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -0.04 Total: -40.55 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -71.91 5.36 -66.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868523308.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.568 kcal (2) G-P(sol) polarization free energy of solvation -71.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds