Wall clock time and date at job start Mon Mar 30 2020 02:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36876 * 119.99782 * 2 1 4 4 H 1.07998 * 120.00129 * 194.28484 * 3 2 1 5 5 C 1.39049 * 119.99836 * 14.28528 * 3 2 1 6 6 N 1.31365 * 119.99855 * 26.92230 * 5 3 2 7 7 Si 1.86800 * 120.00148 * 206.91839 * 5 3 2 8 8 H 1.48500 * 109.46943 * 94.99166 * 7 5 3 9 9 H 1.48494 * 109.47380 * 214.99555 * 7 5 3 10 10 H 1.48508 * 109.47056 * 334.99641 * 7 5 3 11 11 C 1.34775 * 120.00546 * 180.02562 * 2 1 3 12 12 O 1.21590 * 120.00144 * 182.95702 * 11 2 1 13 13 C 1.47740 * 119.99773 * 2.94864 * 11 2 1 14 14 C 1.39677 * 120.12511 * 327.20798 * 13 11 2 15 15 C 1.37936 * 119.95885 * 179.97438 * 14 13 11 16 16 C 1.38304 * 120.21354 * 0.02617 * 15 14 13 17 17 C 1.38826 * 120.25289 * 359.97275 * 16 15 14 18 18 O 1.35915 * 119.98368 * 180.02562 * 17 16 15 19 19 C 1.42903 * 116.99920 * 354.26490 * 18 17 16 20 20 C 1.53002 * 109.46772 * 62.68403 * 19 18 17 21 21 C 1.52994 * 109.46965 * 182.68453 * 19 18 17 22 22 C 1.52998 * 109.47102 * 302.68685 * 19 18 17 23 23 C 1.38478 * 120.03524 * 0.02562 * 17 16 15 24 24 H 1.09001 * 109.46983 * 273.47652 * 1 2 3 25 25 H 1.09001 * 109.47464 * 33.48198 * 1 2 3 26 26 H 1.09009 * 109.47003 * 153.47752 * 1 2 3 27 27 H 0.97005 * 119.99433 * 179.97438 * 6 5 3 28 28 H 1.07996 * 120.02040 * 0.04574 * 14 13 11 29 29 H 1.08001 * 119.89908 * 179.97438 * 15 14 13 30 30 H 1.07999 * 119.87439 * 180.02562 * 16 15 14 31 31 H 1.09003 * 109.47007 * 86.37231 * 20 19 18 32 32 H 1.08997 * 109.46766 * 206.36970 * 20 19 18 33 33 H 1.08996 * 109.47245 * 326.37235 * 20 19 18 34 34 H 1.09002 * 109.47625 * 59.99676 * 21 19 18 35 35 H 1.09003 * 109.47316 * 180.02562 * 21 19 18 36 36 H 1.09005 * 109.47129 * 299.99715 * 21 19 18 37 37 H 1.08999 * 109.47351 * 53.50317 * 22 19 18 38 38 H 1.09000 * 109.46899 * 173.51230 * 22 19 18 39 39 H 1.09006 * 109.46466 * 293.50602 * 22 19 18 40 40 H 1.08002 * 120.10285 * 179.74743 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.2042 1.1999 -0.2308 5 6 1.4862 2.3709 0.2971 6 7 0.4182 2.3523 1.0618 7 14 2.1141 3.9901 -0.3909 8 1 1.3856 4.3109 -1.6446 9 1 1.8893 5.0706 0.6026 10 1 3.5667 3.8759 -0.6779 11 6 2.1389 -1.1671 -0.0005 12 8 3.3536 -1.1678 0.0538 13 6 1.4018 -2.4457 -0.0669 14 6 0.1439 -2.5615 0.5291 15 6 -0.5416 -3.7567 0.4646 16 6 0.0128 -4.8426 -0.1884 17 6 1.2624 -4.7374 -0.7839 18 8 1.8018 -5.8078 -1.4246 19 6 1.0877 -7.0426 -1.3390 20 6 -0.2844 -6.8848 -1.9975 21 6 1.8759 -8.1385 -2.0589 22 6 0.9067 -7.4263 0.1310 23 6 1.9597 -3.5424 -0.7254 24 1 -0.3633 0.0623 1.0258 25 1 -0.3634 0.8571 -0.5669 26 1 -0.3633 -0.9196 -0.4589 27 1 -0.0441 3.1794 1.2694 28 1 -0.2923 -1.7154 1.0392 29 1 -1.5140 -3.8453 0.9262 30 1 -0.5289 -5.7757 -0.2359 31 1 -0.1985 -7.0778 -3.0669 32 1 -0.9834 -7.5947 -1.5553 33 1 -0.6486 -5.8698 -1.8396 34 1 2.8534 -8.2509 -1.5899 35 1 1.3310 -9.0804 -1.9941 36 1 2.0048 -7.8652 -3.1062 37 1 0.4479 -6.5969 0.6692 38 1 0.2648 -8.3045 0.2009 39 1 1.8788 -7.6510 0.5700 40 1 2.9337 -3.4605 -1.1848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874257025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:18 Heat of formation + Delta-G solvation = -29.697020 kcal Electronic energy + Delta-G solvation = -21739.212023 eV Core-core repulsion = 18520.305922 eV Total energy + Delta-G solvation = -3218.906101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.87501 -40.62788 -38.26926 -36.82729 -35.10300 -33.90911 -32.09043 -31.08512 -28.64790 -28.31253 -27.92525 -26.86602 -24.30983 -23.47670 -22.00892 -20.49120 -19.12768 -18.46407 -17.75758 -17.38727 -16.84253 -16.42828 -16.26971 -15.95871 -15.72206 -15.02093 -14.90872 -14.77446 -14.57030 -14.14841 -13.84508 -13.70717 -13.33080 -13.23546 -13.09762 -12.98327 -12.83089 -12.70976 -12.57284 -12.38723 -12.16160 -12.06126 -11.80993 -11.51147 -11.37612 -11.02836 -10.48913 -9.93487 -9.80605 -9.08364 -8.50805 -5.97375 -0.00183 0.46386 1.35175 1.40078 1.52890 1.97421 2.16570 2.29930 2.77018 2.97360 3.11629 3.74543 3.83165 3.86013 3.94210 4.00220 4.11168 4.25934 4.35771 4.56001 4.58772 4.63331 4.69046 4.76458 4.84433 4.90128 4.90538 4.93935 5.03435 5.16935 5.19147 5.22074 5.34730 5.36315 5.40103 5.41671 5.52100 5.76070 5.99774 6.38726 6.54643 7.06225 7.33183 7.93840 8.53398 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040051 B = 0.003921 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.943589 B = 7138.909240 C = 7483.571549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.437 5.437 3 C -0.363 4.363 4 H 0.073 0.927 5 C 0.011 3.989 6 N -0.871 5.871 7 Si 0.988 3.012 8 H -0.262 1.262 9 H -0.268 1.268 10 H -0.277 1.277 11 C 0.452 3.548 12 O -0.643 6.643 13 C -0.082 4.082 14 C -0.149 4.149 15 C -0.078 4.078 16 C -0.196 4.196 17 C 0.128 3.872 18 O -0.328 6.328 19 C 0.093 3.907 20 C -0.196 4.196 21 C -0.136 4.136 22 C -0.199 4.199 23 C -0.138 4.138 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.082 0.918 27 H 0.281 0.719 28 H 0.142 0.858 29 H 0.171 0.829 30 H 0.183 0.817 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.056 0.944 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.854 -18.819 -3.551 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.152 5.152 3 C -0.490 4.490 4 H 0.091 0.909 5 C -0.194 4.194 6 N -0.507 5.507 7 Si 0.810 3.190 8 H -0.186 1.186 9 H -0.193 1.193 10 H -0.201 1.201 11 C 0.244 3.756 12 O -0.534 6.534 13 C -0.086 4.086 14 C -0.168 4.168 15 C -0.096 4.096 16 C -0.215 4.215 17 C 0.083 3.917 18 O -0.244 6.244 19 C 0.056 3.944 20 C -0.253 4.253 21 C -0.193 4.193 22 C -0.256 4.256 23 C -0.158 4.158 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.159 0.841 29 H 0.188 0.812 30 H 0.200 0.800 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.075 0.925 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.286 -18.656 -3.547 21.139 hybrid contribution 0.810 1.215 -0.093 1.463 sum -8.476 -17.441 -3.640 19.730 Atomic orbital electron populations 1.22092 0.79130 1.01003 1.01572 1.43770 1.07055 1.04518 1.59843 1.19650 0.95943 0.84173 1.49281 0.90909 1.26059 0.96688 1.02321 0.94382 1.70118 1.20794 1.30544 1.29197 0.85033 0.78646 0.76527 0.78794 1.18646 1.19317 1.20142 1.18693 0.87207 0.84601 0.85121 1.90533 1.15879 1.87774 1.59207 1.19697 0.95888 0.92771 1.00226 1.21901 0.93380 1.00351 1.01172 1.21336 1.00721 0.90468 0.97040 1.22271 0.94974 1.02200 1.02007 1.18629 0.92725 0.86628 0.93709 1.86155 1.51140 1.17663 1.69409 1.22223 0.93188 0.81855 0.97140 1.22874 0.95788 1.04336 1.02267 1.21865 1.00438 0.96753 1.00251 1.22913 1.03698 1.04217 0.94758 1.20269 1.00400 0.91554 1.03552 0.92100 0.92966 0.89964 0.90909 0.84075 0.81154 0.80018 0.91245 0.88118 0.91001 0.92334 0.87608 0.91943 0.90454 0.87946 0.92505 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.74 7.12 127.77 0.91 5.65 16 2 N -0.44 -24.26 3.02 -662.31 -2.00 -26.26 16 3 C -0.36 -21.70 9.32 84.10 0.78 -20.92 16 4 H 0.07 4.72 7.40 -2.91 -0.02 4.70 16 5 C 0.01 0.58 4.79 84.96 0.41 0.99 16 6 N -0.87 -45.76 11.11 21.68 0.24 -45.51 16 7 Si 0.99 42.41 29.63 68.60 2.03 44.44 16 8 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 9 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 11 C 0.45 25.34 7.38 86.76 0.64 25.98 16 12 O -0.64 -41.52 16.41 -4.00 -0.07 -41.59 16 13 C -0.08 -3.66 5.41 -20.10 -0.11 -3.76 16 14 C -0.15 -5.21 7.44 22.55 0.17 -5.04 16 15 C -0.08 -1.97 10.02 22.21 0.22 -1.75 16 16 C -0.20 -4.83 5.77 22.43 0.13 -4.70 16 17 C 0.13 4.12 6.01 22.47 0.14 4.26 16 18 O -0.33 -9.62 9.79 -92.60 -0.91 -10.52 16 19 C 0.09 1.74 1.11 -10.80 -0.01 1.73 16 20 C -0.20 -2.86 8.03 71.98 0.58 -2.28 16 21 C -0.14 -2.03 8.70 71.98 0.63 -1.40 16 22 C -0.20 -3.17 8.03 71.98 0.58 -2.59 16 23 C -0.14 -5.70 9.54 22.64 0.22 -5.48 16 24 H 0.06 2.76 6.81 -2.39 -0.02 2.75 16 25 H 0.05 2.44 7.02 -2.39 -0.02 2.42 16 26 H 0.08 3.17 4.99 -2.38 -0.01 3.16 16 27 H 0.28 13.51 8.31 -92.70 -0.77 12.74 16 28 H 0.14 4.93 4.91 -2.91 -0.01 4.92 16 29 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 30 H 0.18 3.09 3.61 -2.91 -0.01 3.08 16 31 H 0.07 0.98 7.87 -2.39 -0.02 0.96 16 32 H 0.10 0.86 7.77 -2.39 -0.02 0.84 16 33 H 0.07 1.26 4.95 -2.39 -0.01 1.25 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 0.98 8.11 -2.38 -0.02 0.96 16 37 H 0.08 1.36 4.54 -2.39 -0.01 1.35 16 38 H 0.10 0.96 7.97 -2.39 -0.02 0.94 16 39 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.10 4.79 7.97 -2.91 -0.02 4.76 16 Total: -1.00 -75.54 314.65 5.63 -69.91 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 1.06 Total: 18.86 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 5.27 Total: -9.33 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -1.76 Total: -71.77 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -0.97 Total: -52.11 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -75.54 5.63 -69.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874257025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.216 kcal (2) G-P(sol) polarization free energy of solvation -75.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds