Wall clock time and date at job start Mon Mar 30 2020 02:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47177 * 2 1 4 4 C 1.53007 * 109.46812 * 239.99818 * 2 1 3 5 5 O 1.42894 * 109.46790 * 120.00223 * 2 1 3 6 6 C 1.42900 * 114.00419 * 60.00194 * 5 2 1 7 7 C 1.50701 * 109.47269 * 180.02562 * 6 5 2 8 8 C 1.38362 * 119.95343 * 270.24977 * 7 6 5 9 9 C 1.38309 * 120.16352 * 180.30018 * 8 7 6 10 10 C 1.38083 * 120.08139 * 359.44253 * 9 8 7 11 11 C 1.39008 * 119.91959 * 0.27876 * 10 9 8 12 12 N 1.39535 * 120.08373 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99879 * 33.38960 * 12 11 10 14 14 O 1.21742 * 120.00080 * 5.27877 * 13 12 11 15 15 C 1.46175 * 119.99906 * 185.27838 * 13 12 11 16 16 H 1.07998 * 119.99632 * 0.02562 * 15 13 12 17 17 C 1.40124 * 119.99671 * 180.02562 * 15 13 12 18 18 N 1.30633 * 120.00207 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99631 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47348 * 89.99615 * 19 17 15 21 21 H 1.48493 * 109.47231 * 209.99942 * 19 17 15 22 22 H 1.48502 * 109.47202 * 329.99843 * 19 17 15 23 23 C 1.38033 * 119.96271 * 89.99288 * 7 6 5 24 24 H 1.09003 * 109.46572 * 300.00271 * 1 2 3 25 25 H 1.08998 * 109.46838 * 59.99457 * 1 2 3 26 26 H 1.08999 * 109.47500 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47040 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47166 * 299.99984 * 3 2 1 29 29 H 1.08999 * 109.47127 * 60.00305 * 3 2 1 30 30 H 1.08999 * 109.46978 * 300.00185 * 4 2 1 31 31 H 1.09003 * 109.46472 * 60.00398 * 4 2 1 32 32 H 1.08998 * 109.46915 * 180.02562 * 4 2 1 33 33 H 1.08995 * 109.47114 * 59.99452 * 6 5 2 34 34 H 1.09006 * 109.46438 * 299.99483 * 6 5 2 35 35 H 1.07997 * 119.91823 * 0.04482 * 8 7 6 36 36 H 1.08001 * 119.95298 * 179.72412 * 9 8 7 37 37 H 1.08003 * 120.03582 * 180.25486 * 10 9 8 38 38 H 0.97001 * 120.00038 * 213.39565 * 12 11 10 39 39 H 0.96999 * 119.99523 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.04142 * 0.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5847 -2.0356 1.2644 7 6 2.1410 -2.6444 2.5258 8 6 3.3774 -3.2651 2.5062 9 6 3.8894 -3.8307 3.6599 10 6 3.1728 -3.7678 4.8385 11 6 1.9327 -3.1400 4.8634 12 7 1.2054 -3.0749 6.0524 13 6 1.8496 -2.9684 7.2314 14 8 3.0592 -2.8323 7.2540 15 6 1.0960 -3.0164 8.4830 16 1 0.0230 -3.1376 8.4628 17 6 1.7658 -2.9051 9.7087 18 7 3.0637 -2.7590 9.7330 19 14 0.8026 -2.9656 11.3081 20 1 0.7030 -4.3725 11.7731 21 1 1.4995 -2.1525 12.3368 22 1 -0.5606 -2.4201 11.0860 23 6 1.4188 -2.5776 3.7002 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2491 33 1 1.9491 -2.5916 0.4007 34 1 0.4958 -2.0777 1.2907 35 1 3.9424 -3.3115 1.5870 36 1 4.8529 -4.3183 3.6397 37 1 3.5751 -4.2062 5.7399 38 1 0.2362 -3.1064 6.0304 39 1 3.5273 -2.6824 10.5816 40 1 0.4554 -2.0897 3.7155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885618993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:02 Heat of formation + Delta-G solvation = -70.468368 kcal Electronic energy + Delta-G solvation = -20983.057663 eV Core-core repulsion = 17762.383583 eV Total energy + Delta-G solvation = -3220.674079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.51657 -38.73939 -36.92891 -33.90333 -33.21055 -32.42853 -30.92386 -29.02750 -27.73681 -27.57640 -26.23868 -25.48137 -21.97924 -21.50596 -20.07387 -19.31824 -17.53356 -16.60724 -16.36803 -15.61707 -15.49173 -15.22152 -14.76949 -14.48489 -14.02061 -13.63917 -13.49458 -13.28610 -12.89062 -12.55601 -12.48846 -12.27243 -12.11114 -11.88819 -11.86720 -11.72366 -11.36290 -11.33440 -11.08424 -10.99375 -10.75097 -10.62449 -10.35499 -10.32933 -9.49268 -9.28674 -8.87445 -8.31033 -7.72770 -7.03258 -6.33495 -4.80838 1.88787 2.04931 3.07834 3.14759 3.18248 3.73220 4.00452 4.33865 4.59696 4.63995 4.67626 4.70348 4.87742 5.18209 5.22008 5.28067 5.32715 5.45342 5.52565 5.59471 5.64206 5.67208 5.67260 5.71972 5.75605 5.87209 6.01905 6.10545 6.12199 6.22102 6.42377 6.55572 7.00815 7.12672 7.17191 7.29171 7.31597 7.46158 7.76184 8.08416 8.20665 8.86125 9.24274 10.40432 10.58321 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028273 B = 0.003457 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.109509 B = 8098.344923 C = 8578.542768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.103 3.897 3 C -0.138 4.138 4 C -0.178 4.178 5 O -0.367 6.367 6 C 0.106 3.894 7 C -0.076 4.076 8 C -0.146 4.146 9 C -0.104 4.104 10 C -0.122 4.122 11 C 0.190 3.810 12 N -0.701 5.701 13 C 0.543 3.457 14 O -0.559 6.559 15 C -0.539 4.539 16 H 0.072 0.928 17 C 0.086 3.914 18 N -0.759 5.759 19 Si 0.913 3.087 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.264 1.264 23 C -0.154 4.154 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.793 2.344 -17.998 18.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.064 3.936 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.286 6.286 6 C 0.030 3.970 7 C -0.077 4.077 8 C -0.165 4.165 9 C -0.123 4.123 10 C -0.143 4.143 11 C 0.091 3.909 12 N -0.344 5.344 13 C 0.350 3.650 14 O -0.441 6.441 15 C -0.575 4.575 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.387 5.387 19 Si 0.737 3.263 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.176 4.176 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.156 0.844 38 H 0.226 0.774 39 H 0.083 0.917 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.654 2.556 -17.600 18.156 hybrid contribution -1.124 -0.109 0.597 1.278 sum -4.778 2.447 -17.003 17.830 Atomic orbital electron populations 1.22440 0.95946 1.02531 1.02722 1.21483 0.93053 0.93295 0.85751 1.21747 1.02014 0.93420 1.02288 1.22435 1.02267 1.01003 0.97847 1.88123 1.74276 1.23800 1.42443 1.21291 0.97842 0.82699 0.95179 1.19134 0.95403 0.99563 0.93618 1.20715 0.95474 1.02187 0.98146 1.20939 0.99273 0.99691 0.92415 1.21383 0.95135 0.99334 0.98489 1.17931 0.93100 0.93286 0.86541 1.44144 1.09141 1.76322 1.04781 1.18380 0.87688 0.77090 0.81873 1.90641 1.14376 1.53121 1.85949 1.20859 0.94558 1.52984 0.89113 0.91013 1.25747 0.94746 0.92549 1.00456 1.69986 1.08215 1.33382 1.27150 0.86280 0.80298 0.78835 0.80868 1.19584 1.20300 1.18780 1.20696 1.01731 1.02897 0.92293 0.91591 0.91753 0.92149 0.91805 0.91415 0.91715 0.92168 0.91755 0.91693 0.92717 0.92743 0.87143 0.86561 0.84443 0.77443 0.91740 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 8.25 37.16 0.31 -1.36 16 2 C 0.10 1.11 1.14 -90.61 -0.10 1.01 16 3 C -0.14 -1.33 8.84 37.16 0.33 -1.00 16 4 C -0.18 -1.58 8.25 37.16 0.31 -1.28 16 5 O -0.37 -5.32 9.97 -35.23 -0.35 -5.67 16 6 C 0.11 1.42 5.26 36.01 0.19 1.61 16 7 C -0.08 -1.28 5.51 -104.65 -0.58 -1.85 16 8 C -0.15 -2.42 9.70 -39.51 -0.38 -2.80 16 9 C -0.10 -1.91 10.04 -39.61 -0.40 -2.30 16 10 C -0.12 -2.68 8.65 -39.35 -0.34 -3.02 16 11 C 0.19 4.12 6.28 -83.77 -0.53 3.59 16 12 N -0.70 -16.12 5.32 -11.19 -0.06 -16.18 16 13 C 0.54 15.26 7.47 -13.08 -0.10 15.17 16 14 O -0.56 -17.67 12.70 5.15 0.07 -17.60 16 15 C -0.54 -14.84 9.54 -35.69 -0.34 -15.18 16 16 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 17 C 0.09 2.34 5.50 -17.35 -0.10 2.25 16 18 N -0.76 -22.20 11.82 55.55 0.66 -21.55 16 19 Si 0.91 19.61 29.56 -169.99 -5.02 14.59 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 23 C -0.15 -2.85 9.62 -39.36 -0.38 -3.23 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.54 6.54 -51.93 -0.34 0.20 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.52 6.54 -51.93 -0.34 0.18 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.64 6.36 -51.93 -0.33 0.31 16 34 H 0.05 0.66 6.36 -51.93 -0.33 0.33 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.14 3.41 6.42 -52.48 -0.34 3.07 16 38 H 0.39 7.71 8.79 -40.82 -0.36 7.35 16 39 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 40 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 333.06 15.07 5.02 5.02 Total: -1.00 -33.28 333.06 -7.61 -40.89 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -5.81 Total: 8.91 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -2.11 Total: -8.41 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.60 Total: -37.72 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.29 Total: -23.27 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.28 -7.61 -40.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885618993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.580 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds