Wall clock time and date at job start Mon Mar 30 2020 02:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47177 * 2 1 4 4 C 1.53007 * 109.46812 * 239.99818 * 2 1 3 5 5 O 1.42894 * 109.46790 * 120.00223 * 2 1 3 6 6 C 1.42900 * 114.00419 * 60.00194 * 5 2 1 7 7 C 1.50701 * 109.47269 * 180.02562 * 6 5 2 8 8 C 1.38362 * 119.95343 * 270.24977 * 7 6 5 9 9 C 1.38309 * 120.16352 * 180.30018 * 8 7 6 10 10 C 1.38083 * 120.08139 * 359.44253 * 9 8 7 11 11 C 1.39008 * 119.91959 * 0.27876 * 10 9 8 12 12 N 1.39535 * 120.08373 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99879 * 33.38960 * 12 11 10 14 14 O 1.21742 * 120.00080 * 5.27877 * 13 12 11 15 15 C 1.46175 * 119.99906 * 185.27838 * 13 12 11 16 16 H 1.07998 * 119.99632 * 0.02562 * 15 13 12 17 17 C 1.40124 * 119.99671 * 180.02562 * 15 13 12 18 18 N 1.30633 * 120.00207 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99631 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47348 * 89.99615 * 19 17 15 21 21 H 1.48493 * 109.47231 * 209.99942 * 19 17 15 22 22 H 1.48502 * 109.47202 * 329.99843 * 19 17 15 23 23 C 1.38033 * 119.96271 * 89.99288 * 7 6 5 24 24 H 1.09003 * 109.46572 * 300.00271 * 1 2 3 25 25 H 1.08998 * 109.46838 * 59.99457 * 1 2 3 26 26 H 1.08999 * 109.47500 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47040 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47166 * 299.99984 * 3 2 1 29 29 H 1.08999 * 109.47127 * 60.00305 * 3 2 1 30 30 H 1.08999 * 109.46978 * 300.00185 * 4 2 1 31 31 H 1.09003 * 109.46472 * 60.00398 * 4 2 1 32 32 H 1.08998 * 109.46915 * 180.02562 * 4 2 1 33 33 H 1.08995 * 109.47114 * 59.99452 * 6 5 2 34 34 H 1.09006 * 109.46438 * 299.99483 * 6 5 2 35 35 H 1.07997 * 119.91823 * 0.04482 * 8 7 6 36 36 H 1.08001 * 119.95298 * 179.72412 * 9 8 7 37 37 H 1.08003 * 120.03582 * 180.25486 * 10 9 8 38 38 H 0.97001 * 120.00038 * 213.39565 * 12 11 10 39 39 H 0.96999 * 119.99523 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.04142 * 0.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5847 -2.0356 1.2644 7 6 2.1410 -2.6444 2.5258 8 6 3.3774 -3.2651 2.5062 9 6 3.8894 -3.8307 3.6599 10 6 3.1728 -3.7678 4.8385 11 6 1.9327 -3.1400 4.8634 12 7 1.2054 -3.0749 6.0524 13 6 1.8496 -2.9684 7.2314 14 8 3.0592 -2.8323 7.2540 15 6 1.0960 -3.0164 8.4830 16 1 0.0230 -3.1376 8.4628 17 6 1.7658 -2.9051 9.7087 18 7 3.0637 -2.7590 9.7330 19 14 0.8026 -2.9656 11.3081 20 1 0.7030 -4.3725 11.7731 21 1 1.4995 -2.1525 12.3368 22 1 -0.5606 -2.4201 11.0860 23 6 1.4188 -2.5776 3.7002 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2491 33 1 1.9491 -2.5916 0.4007 34 1 0.4958 -2.0777 1.2907 35 1 3.9424 -3.3115 1.5870 36 1 4.8529 -4.3183 3.6397 37 1 3.5751 -4.2062 5.7399 38 1 0.2362 -3.1064 6.0304 39 1 3.5273 -2.6824 10.5816 40 1 0.4554 -2.0897 3.7155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885618993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:01 Heat of formation + Delta-G solvation = -92.290282 kcal Electronic energy + Delta-G solvation = -20984.003932 eV Core-core repulsion = 17762.383583 eV Total energy + Delta-G solvation = -3221.620349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96203 -39.95091 -38.68611 -35.48706 -34.60508 -34.38919 -32.25504 -30.71385 -28.57204 -28.27405 -28.18130 -26.67537 -23.66929 -23.05175 -21.19006 -20.78744 -19.48402 -17.94482 -17.57873 -17.44223 -16.91358 -16.55875 -15.99671 -15.82723 -15.57000 -14.92398 -14.73721 -14.41142 -14.32665 -14.32232 -13.78405 -13.46776 -13.20106 -13.05539 -12.83783 -12.79671 -12.77524 -12.68698 -12.61826 -12.40663 -12.12989 -12.05403 -11.94747 -11.37001 -11.08917 -10.83399 -10.41429 -9.99779 -9.67770 -8.76495 -8.38222 -6.96642 0.41739 0.52844 1.38803 1.40395 1.56183 2.19938 2.34200 2.63887 2.95032 3.17999 3.57287 3.83558 3.93467 4.02023 4.06599 4.16889 4.25080 4.37557 4.42901 4.54755 4.68954 4.70030 4.74291 4.84120 4.89717 4.92115 4.97671 5.00136 5.08667 5.20689 5.23769 5.38432 5.40852 5.50881 5.56922 5.66904 5.79042 5.93576 6.15062 6.40127 6.42643 6.76006 7.32412 8.33789 8.55548 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028273 B = 0.003457 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.109509 B = 8098.344923 C = 8578.542768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.094 3.906 3 C -0.139 4.139 4 C -0.175 4.175 5 O -0.397 6.397 6 C 0.109 3.891 7 C -0.073 4.073 8 C -0.134 4.134 9 C -0.104 4.104 10 C -0.154 4.154 11 C 0.156 3.844 12 N -0.694 5.694 13 C 0.528 3.472 14 O -0.607 6.607 15 C -0.567 4.567 16 H 0.093 0.907 17 C 0.028 3.972 18 N -0.814 5.814 19 Si 1.004 2.996 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.247 1.247 23 C -0.150 4.150 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.148 0.852 36 H 0.138 0.862 37 H 0.095 0.905 38 H 0.406 0.594 39 H 0.278 0.722 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.525 2.741 -20.108 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.055 3.945 3 C -0.196 4.196 4 C -0.232 4.232 5 O -0.318 6.318 6 C 0.033 3.967 7 C -0.074 4.074 8 C -0.153 4.153 9 C -0.123 4.123 10 C -0.176 4.176 11 C 0.059 3.941 12 N -0.339 5.339 13 C 0.335 3.665 14 O -0.493 6.493 15 C -0.602 4.602 16 H 0.111 0.889 17 C -0.188 4.188 18 N -0.443 5.443 19 Si 0.822 3.178 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.170 1.170 23 C -0.171 4.171 24 H 0.071 0.929 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.166 0.834 36 H 0.156 0.844 37 H 0.113 0.887 38 H 0.242 0.758 39 H 0.088 0.912 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.423 2.947 -19.777 20.718 hybrid contribution -0.545 -0.201 1.045 1.195 sum -5.968 2.746 -18.732 19.851 Atomic orbital electron populations 1.22429 0.94888 1.02956 1.03176 1.21775 0.93987 0.93421 0.85302 1.21799 1.01584 0.93271 1.02920 1.22406 1.01911 1.01309 0.97567 1.88072 1.75016 1.24128 1.44583 1.21303 0.98627 0.82771 0.93965 1.19611 0.95037 0.98358 0.94384 1.21144 0.95448 1.00084 0.98620 1.21180 0.99816 0.99542 0.91714 1.21223 0.96405 1.01424 0.98506 1.18193 0.93575 0.95354 0.87021 1.43699 1.09761 1.76104 1.04312 1.18765 0.87376 0.76720 0.83611 1.90595 1.16328 1.55280 1.87098 1.21417 0.95745 1.53387 0.89666 0.88877 1.27048 0.95743 0.91098 1.04920 1.70154 1.10725 1.34661 1.28725 0.84929 0.78831 0.79341 0.74671 1.18465 1.19696 1.17046 1.20897 1.02518 1.02049 0.91656 0.92874 0.89623 0.91717 0.92544 0.88824 0.93066 0.91641 0.89730 0.92263 0.90228 0.91279 0.83447 0.84385 0.88717 0.75828 0.91215 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.78 8.25 71.98 0.59 -2.19 16 2 C 0.09 1.75 1.14 -10.79 -0.01 1.74 16 3 C -0.14 -2.41 8.84 71.98 0.64 -1.78 16 4 C -0.17 -2.48 8.25 71.98 0.59 -1.88 16 5 O -0.40 -10.59 9.97 -148.98 -1.49 -12.07 16 6 C 0.11 2.59 5.26 71.24 0.37 2.96 16 7 C -0.07 -2.29 5.51 -19.88 -0.11 -2.40 16 8 C -0.13 -4.15 9.70 22.32 0.22 -3.93 16 9 C -0.10 -3.80 10.04 22.25 0.22 -3.57 16 10 C -0.15 -7.14 8.65 22.42 0.19 -6.95 16 11 C 0.16 6.98 6.28 38.29 0.24 7.22 16 12 N -0.69 -33.32 5.32 -307.53 -1.64 -34.96 16 13 C 0.53 31.25 7.47 86.30 0.65 31.90 16 14 O -0.61 -40.96 12.70 -4.48 -0.06 -41.02 16 15 C -0.57 -32.04 9.54 24.79 0.24 -31.80 16 16 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 17 C 0.03 1.56 5.50 85.33 0.47 2.03 16 18 N -0.81 -49.57 11.82 21.85 0.26 -49.31 16 19 Si 1.00 40.42 29.56 68.60 2.03 42.45 16 20 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 22 H -0.25 -9.21 7.11 99.48 0.71 -8.51 16 23 C -0.15 -5.44 9.62 22.42 0.22 -5.23 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 0.95 6.54 -2.39 -0.02 0.93 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.86 6.54 -2.39 -0.02 0.84 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.51 6.36 -2.39 -0.02 1.49 16 34 H 0.07 1.44 6.36 -2.38 -0.02 1.43 16 35 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 36 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 37 H 0.09 5.15 6.42 -2.91 -0.02 5.14 16 38 H 0.41 16.40 8.79 -92.71 -0.82 15.59 16 39 H 0.28 15.27 8.29 -92.71 -0.77 14.50 16 40 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -77.08 333.06 3.85 -73.22 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: 0.23 Total: 35.59 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 4.52 Total: -13.90 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -1.38 Total: -84.27 kcal Atomic # 8 Polarization: -51.55 SS G_CDS: -1.54 Total: -53.09 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -77.08 3.85 -73.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885618993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.067 kcal (2) G-P(sol) polarization free energy of solvation -77.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds