Wall clock time and date at job start Mon Mar 30 2020 02:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47346 * 2 1 4 4 H 1.09001 * 109.47579 * 54.99625 * 3 2 1 5 5 O 1.42904 * 109.46900 * 294.99898 * 3 2 1 6 6 C 1.53001 * 109.47146 * 175.00171 * 3 2 1 7 7 H 1.08997 * 109.47617 * 59.99986 * 6 3 2 8 8 C 1.53002 * 109.46925 * 299.99510 * 6 3 2 9 9 C 1.50708 * 109.46828 * 179.97438 * 6 3 2 10 10 O 1.21274 * 120.00057 * 359.97438 * 9 6 3 11 11 N 1.34779 * 119.99974 * 179.97438 * 9 6 3 12 12 C 1.39236 * 120.00014 * 174.42201 * 11 9 6 13 13 C 1.39484 * 119.83299 * 325.29262 * 12 11 9 14 14 C 1.36372 * 120.16692 * 180.23587 * 13 12 11 15 15 C 1.40874 * 119.82750 * 359.49866 * 14 13 12 16 16 C 1.41155 * 120.16174 * 180.25433 * 15 14 13 17 17 H 1.07993 * 120.00179 * 34.63492 * 16 15 14 18 18 C 1.39900 * 119.99607 * 214.63461 * 16 15 14 19 19 N 1.30878 * 120.00376 * 5.44997 * 18 16 15 20 20 Si 1.86797 * 119.99912 * 185.44955 * 18 16 15 21 21 H 1.48502 * 109.47371 * 59.99999 * 20 18 16 22 22 H 1.48499 * 109.47254 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47328 * 300.00059 * 20 18 16 24 24 C 1.40868 * 119.67076 * 0.49891 * 15 14 13 25 25 C 1.36372 * 119.83204 * 359.75539 * 24 15 14 26 26 H 1.09005 * 109.47108 * 300.00090 * 1 2 3 27 27 H 1.09001 * 109.47404 * 60.00337 * 1 2 3 28 28 H 1.08998 * 109.47252 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47373 * 239.99233 * 2 1 3 30 30 H 1.09008 * 109.47182 * 119.99326 * 2 1 3 31 31 H 0.96699 * 114.00030 * 300.00221 * 5 3 2 32 32 H 1.09001 * 109.46946 * 300.00023 * 8 6 3 33 33 H 1.08998 * 109.47220 * 60.00190 * 8 6 3 34 34 H 1.09002 * 109.46788 * 180.02562 * 8 6 3 35 35 H 0.97003 * 119.99709 * 354.42253 * 11 9 6 36 36 H 1.07995 * 119.91632 * 359.95778 * 13 12 11 37 37 H 1.08001 * 120.08801 * 179.74776 * 14 13 12 38 38 H 0.97002 * 119.99698 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.08399 * 179.73310 * 24 15 14 40 40 H 1.07992 * 119.91952 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6619 2.0813 -1.2211 6 6 3.5648 1.4442 0.1257 7 1 3.9995 0.9052 -0.7161 8 6 3.9695 0.7603 1.4331 9 6 4.0672 2.8651 0.1250 10 8 3.2830 3.7855 0.0327 11 7 5.3881 3.1129 0.2271 12 6 5.8629 4.4165 0.1100 13 6 5.2385 5.3066 -0.7637 14 6 5.7009 6.5836 -0.8873 15 6 6.8056 7.0060 -0.1219 16 6 7.2867 8.3277 -0.2403 17 1 6.5971 9.1395 -0.4181 18 6 8.6570 8.5860 -0.1273 19 7 9.5033 7.5935 -0.0187 20 14 9.2789 10.3474 -0.1314 21 1 8.6793 11.0867 1.0084 22 1 10.7581 10.3504 -0.0007 23 1 8.8937 11.0054 -1.4056 24 6 7.4309 6.1012 0.7584 25 6 6.9604 4.8259 0.8674 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.0141 1.6541 -2.0139 32 1 3.5349 1.2994 2.2749 33 1 3.6062 -0.2674 1.4332 34 1 5.0559 0.7619 1.5228 35 1 6.0079 2.3830 0.3822 36 1 4.3895 4.9824 -1.3471 37 1 5.2190 7.2705 -1.5672 38 1 10.4534 7.7727 0.0600 39 1 8.2809 6.4167 1.3451 40 1 7.4389 4.1310 1.5414 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899982634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:52 Heat of formation + Delta-G solvation = -82.864935 kcal Electronic energy + Delta-G solvation = -21181.921159 eV Core-core repulsion = 17960.709524 eV Total energy + Delta-G solvation = -3221.211635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.04202 -38.07211 -36.86667 -34.37106 -33.76492 -32.84037 -31.95183 -29.56551 -28.79218 -26.08105 -25.32033 -23.75214 -21.77927 -21.12084 -20.57820 -19.38070 -17.34863 -17.10408 -16.53834 -16.16321 -15.43110 -15.17160 -14.77259 -14.59034 -14.04119 -13.82235 -13.43589 -12.93264 -12.71818 -12.69428 -12.34986 -12.12937 -12.10552 -12.02583 -11.75779 -11.54556 -11.38259 -11.09795 -11.07662 -10.92395 -10.70978 -10.51006 -10.00997 -9.92463 -9.72141 -9.26020 -9.09236 -8.69055 -7.53821 -6.85134 -6.64664 -4.29682 2.59391 3.06886 3.09124 3.10712 3.13780 3.40185 3.68840 3.99514 4.39021 4.46600 4.68879 4.74176 4.90116 4.95572 5.08779 5.16352 5.38671 5.43955 5.56682 5.60528 5.67892 5.72403 5.80511 5.93435 6.08217 6.14830 6.19946 6.43132 6.78633 6.94754 7.08742 7.23307 7.30974 7.63126 7.71430 7.74606 7.90362 8.07644 8.30542 8.31966 8.63419 8.82776 8.93805 9.02902 10.31178 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048966 B = 0.003326 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.687758 B = 8416.690211 C = 8826.057618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.159 4.159 3 C 0.128 3.872 4 H 0.102 0.898 5 O -0.541 6.541 6 C -0.145 4.145 7 H 0.094 0.906 8 C -0.146 4.146 9 C 0.501 3.499 10 O -0.512 6.512 11 N -0.656 5.656 12 C 0.008 3.992 13 C -0.083 4.083 14 C -0.205 4.205 15 C 0.106 3.894 16 C -0.465 4.465 17 H 0.076 0.924 18 C 0.072 3.928 19 N -0.812 5.812 20 Si 0.913 3.087 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.267 1.267 24 C -0.139 4.139 25 C -0.120 4.120 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.365 0.635 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.393 0.607 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.278 0.722 39 H 0.121 0.879 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.585 -15.379 1.084 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.196 4.196 3 C 0.068 3.932 4 H 0.120 0.880 5 O -0.344 6.344 6 C -0.167 4.167 7 H 0.112 0.888 8 C -0.203 4.203 9 C 0.287 3.713 10 O -0.386 6.386 11 N -0.300 5.300 12 C -0.084 4.084 13 C -0.103 4.103 14 C -0.225 4.225 15 C 0.103 3.897 16 C -0.496 4.496 17 H 0.094 0.906 18 C -0.143 4.143 19 N -0.439 5.439 20 Si 0.738 3.262 21 H -0.190 1.190 22 H -0.205 1.205 23 H -0.191 1.191 24 C -0.159 4.159 25 C -0.141 4.141 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.211 0.789 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.226 0.774 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.138 0.862 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.231 -14.361 1.434 16.615 hybrid contribution 1.203 -0.111 -0.311 1.247 sum -7.028 -14.472 1.123 16.127 Atomic orbital electron populations 1.21690 0.95068 1.01170 1.02640 1.22351 0.97248 0.97323 1.02714 1.21715 0.90477 0.92115 0.88878 0.88007 1.86755 1.76009 1.56838 1.14811 1.22126 0.98757 0.94975 1.00821 0.88764 1.21811 1.02034 1.00575 0.95907 1.20323 0.82475 0.90627 0.77860 1.90741 1.54878 1.45626 1.47402 1.43073 1.06992 1.08383 1.71558 1.17221 1.01253 0.84795 1.05165 1.20269 0.98749 0.94104 0.97146 1.20800 1.02712 0.95268 1.03685 1.17670 0.90033 0.93435 0.88555 1.19457 0.92298 0.93786 1.44071 0.90604 1.25849 0.96955 0.98975 0.92516 1.69781 1.03769 1.32652 1.37722 0.86302 0.77704 0.82442 0.79799 1.19011 1.20465 1.19127 1.20930 1.01911 0.92604 1.00455 1.20267 0.97563 0.96904 0.99327 0.92687 0.91990 0.93023 0.91745 0.90724 0.78942 0.91762 0.91269 0.91820 0.77390 0.88004 0.88586 0.91097 0.86157 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.81 37.15 0.36 -0.88 16 2 C -0.16 -1.29 5.40 -26.74 -0.14 -1.43 16 3 C 0.13 1.47 2.09 -26.73 -0.06 1.41 16 4 H 0.10 1.37 8.10 -51.93 -0.42 0.95 16 5 O -0.54 -7.31 11.77 -53.51 -0.63 -7.94 16 6 C -0.14 -1.64 2.51 -91.77 -0.23 -1.87 16 7 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 8 C -0.15 -1.30 8.74 37.16 0.32 -0.98 16 9 C 0.50 8.57 6.72 -10.98 -0.07 8.50 16 10 O -0.51 -11.16 13.04 -12.72 -0.17 -11.32 16 11 N -0.66 -11.51 5.23 -9.74 -0.05 -11.56 16 12 C 0.01 0.18 6.26 -83.57 -0.52 -0.35 16 13 C -0.08 -2.02 8.57 -39.79 -0.34 -2.36 16 14 C -0.20 -5.30 9.74 -39.26 -0.38 -5.68 16 15 C 0.11 2.87 5.50 -106.80 -0.59 2.29 16 16 C -0.47 -12.61 9.03 -37.85 -0.34 -12.95 16 17 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 18 C 0.07 1.85 5.31 -17.34 -0.09 1.75 16 19 N -0.81 -21.23 10.96 55.55 0.61 -20.62 16 20 Si 0.91 19.14 29.56 -169.99 -5.03 14.11 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 24 C -0.14 -3.62 8.57 -39.26 -0.34 -3.95 16 25 C -0.12 -2.78 9.90 -39.79 -0.39 -3.17 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.57 7.82 -51.93 -0.41 0.17 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.52 6.17 -51.92 -0.32 0.20 16 31 H 0.36 3.54 9.05 45.56 0.41 3.95 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.46 6.32 -51.93 -0.33 0.13 16 34 H 0.06 0.53 7.45 -51.93 -0.39 0.14 16 35 H 0.39 5.46 8.08 -40.82 -0.33 5.13 16 36 H 0.10 2.47 6.50 -52.49 -0.34 2.13 16 37 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 38 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 39 H 0.12 3.21 6.46 -52.49 -0.34 2.87 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 328.96 15.07 4.96 4.96 Total: -1.00 -31.92 328.96 -8.09 -40.01 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -4.97 Total: 12.04 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -2.81 Total: -19.67 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.56 Total: -32.18 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.80 Total: -19.27 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.92 -8.09 -40.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899982634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.859 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds