Wall clock time and date at job start Mon Mar 30 2020 02:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47346 * 2 1 4 4 H 1.09001 * 109.47579 * 54.99625 * 3 2 1 5 5 O 1.42904 * 109.46900 * 294.99898 * 3 2 1 6 6 C 1.53001 * 109.47146 * 175.00171 * 3 2 1 7 7 H 1.08997 * 109.47617 * 59.99986 * 6 3 2 8 8 C 1.53002 * 109.46925 * 299.99510 * 6 3 2 9 9 C 1.50708 * 109.46828 * 179.97438 * 6 3 2 10 10 O 1.21274 * 120.00057 * 359.97438 * 9 6 3 11 11 N 1.34779 * 119.99974 * 179.97438 * 9 6 3 12 12 C 1.39236 * 120.00014 * 174.42201 * 11 9 6 13 13 C 1.39484 * 119.83299 * 325.29262 * 12 11 9 14 14 C 1.36372 * 120.16692 * 180.23587 * 13 12 11 15 15 C 1.40874 * 119.82750 * 359.49866 * 14 13 12 16 16 C 1.41155 * 120.16174 * 180.25433 * 15 14 13 17 17 H 1.07993 * 120.00179 * 34.63492 * 16 15 14 18 18 C 1.39900 * 119.99607 * 214.63461 * 16 15 14 19 19 N 1.30878 * 120.00376 * 5.44997 * 18 16 15 20 20 Si 1.86797 * 119.99912 * 185.44955 * 18 16 15 21 21 H 1.48502 * 109.47371 * 59.99999 * 20 18 16 22 22 H 1.48499 * 109.47254 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47328 * 300.00059 * 20 18 16 24 24 C 1.40868 * 119.67076 * 0.49891 * 15 14 13 25 25 C 1.36372 * 119.83204 * 359.75539 * 24 15 14 26 26 H 1.09005 * 109.47108 * 300.00090 * 1 2 3 27 27 H 1.09001 * 109.47404 * 60.00337 * 1 2 3 28 28 H 1.08998 * 109.47252 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47373 * 239.99233 * 2 1 3 30 30 H 1.09008 * 109.47182 * 119.99326 * 2 1 3 31 31 H 0.96699 * 114.00030 * 300.00221 * 5 3 2 32 32 H 1.09001 * 109.46946 * 300.00023 * 8 6 3 33 33 H 1.08998 * 109.47220 * 60.00190 * 8 6 3 34 34 H 1.09002 * 109.46788 * 180.02562 * 8 6 3 35 35 H 0.97003 * 119.99709 * 354.42253 * 11 9 6 36 36 H 1.07995 * 119.91632 * 359.95778 * 13 12 11 37 37 H 1.08001 * 120.08801 * 179.74776 * 14 13 12 38 38 H 0.97002 * 119.99698 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.08399 * 179.73310 * 24 15 14 40 40 H 1.07992 * 119.91952 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6619 2.0813 -1.2211 6 6 3.5648 1.4442 0.1257 7 1 3.9995 0.9052 -0.7161 8 6 3.9695 0.7603 1.4331 9 6 4.0672 2.8651 0.1250 10 8 3.2830 3.7855 0.0327 11 7 5.3881 3.1129 0.2271 12 6 5.8629 4.4165 0.1100 13 6 5.2385 5.3066 -0.7637 14 6 5.7009 6.5836 -0.8873 15 6 6.8056 7.0060 -0.1219 16 6 7.2867 8.3277 -0.2403 17 1 6.5971 9.1395 -0.4181 18 6 8.6570 8.5860 -0.1273 19 7 9.5033 7.5935 -0.0187 20 14 9.2789 10.3474 -0.1314 21 1 8.6793 11.0867 1.0084 22 1 10.7581 10.3504 -0.0007 23 1 8.8937 11.0054 -1.4056 24 6 7.4309 6.1012 0.7584 25 6 6.9604 4.8259 0.8674 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.0141 1.6541 -2.0139 32 1 3.5349 1.2994 2.2749 33 1 3.6062 -0.2674 1.4332 34 1 5.0559 0.7619 1.5228 35 1 6.0079 2.3830 0.3822 36 1 4.3895 4.9824 -1.3471 37 1 5.2190 7.2705 -1.5672 38 1 10.4534 7.7727 0.0600 39 1 8.2809 6.4167 1.3451 40 1 7.4389 4.1310 1.5414 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899982634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:52 Heat of formation + Delta-G solvation = -103.862666 kcal Electronic energy + Delta-G solvation = -21182.831689 eV Core-core repulsion = 17960.709524 eV Total energy + Delta-G solvation = -3222.122165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.42956 -39.52175 -38.31614 -36.09870 -34.98354 -34.32603 -32.82394 -31.49951 -30.64150 -27.04562 -26.85091 -24.96521 -23.35206 -22.64769 -21.93972 -20.81942 -19.26143 -18.54304 -17.80095 -17.39454 -16.99510 -16.40046 -16.00727 -15.75396 -15.53555 -15.26406 -14.75567 -14.52367 -14.22462 -14.02239 -13.66706 -13.44021 -13.36543 -13.22784 -12.87529 -12.81529 -12.75176 -12.65858 -12.38843 -12.33564 -11.85548 -11.69535 -11.60102 -11.53821 -11.12447 -10.88605 -10.67755 -10.35106 -9.50029 -8.74409 -8.55628 -6.31432 0.79851 1.10348 1.39206 1.46531 1.50667 1.88335 2.24088 2.36141 2.79402 3.53113 3.60343 3.66746 3.77658 4.11419 4.23429 4.29785 4.33350 4.38335 4.47315 4.62904 4.78204 4.85701 4.88992 4.91340 5.05848 5.10571 5.13046 5.14118 5.26043 5.32940 5.39844 5.43661 5.44791 5.65945 5.87614 6.02192 6.11023 6.37470 6.64704 6.77574 6.94549 6.94916 6.98803 7.47755 8.41924 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048966 B = 0.003326 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.687758 B = 8416.690211 C = 8826.057618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.147 4.147 3 C 0.125 3.875 4 H 0.072 0.928 5 O -0.571 6.571 6 C -0.130 4.130 7 H 0.127 0.873 8 C -0.144 4.144 9 C 0.498 3.502 10 O -0.563 6.563 11 N -0.649 5.649 12 C 0.025 3.975 13 C -0.095 4.095 14 C -0.223 4.223 15 C 0.073 3.927 16 C -0.505 4.505 17 H 0.070 0.930 18 C 0.033 3.967 19 N -0.839 5.839 20 Si 0.985 3.015 21 H -0.262 1.262 22 H -0.265 1.265 23 H -0.264 1.264 24 C -0.156 4.156 25 C -0.119 4.119 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.380 0.620 32 H 0.050 0.950 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.415 0.585 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.286 0.714 39 H 0.109 0.891 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.002 -17.924 1.486 19.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C 0.066 3.934 4 H 0.090 0.910 5 O -0.377 6.377 6 C -0.151 4.151 7 H 0.145 0.855 8 C -0.202 4.202 9 C 0.286 3.714 10 O -0.441 6.441 11 N -0.295 5.295 12 C -0.069 4.069 13 C -0.115 4.115 14 C -0.243 4.243 15 C 0.071 3.929 16 C -0.536 4.536 17 H 0.088 0.912 18 C -0.180 4.180 19 N -0.467 5.467 20 Si 0.806 3.194 21 H -0.186 1.186 22 H -0.190 1.190 23 H -0.188 1.188 24 C -0.176 4.176 25 C -0.139 4.139 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.228 0.772 32 H 0.069 0.931 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.252 0.748 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.127 0.873 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.642 -16.972 1.837 18.704 hybrid contribution 0.909 0.545 -0.440 1.147 sum -6.734 -16.427 1.398 17.809 Atomic orbital electron populations 1.21706 0.95568 1.01991 1.01520 1.22270 0.96729 0.94813 1.04616 1.21760 0.90505 0.93823 0.87340 0.90978 1.86714 1.76638 1.58225 1.16146 1.22143 0.98451 0.90920 1.03619 0.85519 1.21873 1.02846 1.01846 0.93596 1.21469 0.81522 0.92778 0.75590 1.90729 1.56055 1.47976 1.49294 1.43045 1.07994 1.07003 1.71471 1.17296 1.00006 0.86612 1.02988 1.20356 0.98981 0.94134 0.97999 1.20919 1.03050 0.96161 1.04148 1.17973 0.90977 0.94314 0.89620 1.19671 0.93501 0.93865 1.46518 0.91206 1.26673 0.96418 1.03449 0.91466 1.69829 1.04329 1.34675 1.37823 0.85205 0.77627 0.76745 0.79781 1.18617 1.18956 1.18827 1.20931 1.02039 0.93903 1.00698 1.20541 0.97475 0.96450 0.99398 0.93636 0.93413 0.91155 0.89698 0.88746 0.77241 0.93123 0.87946 0.90655 0.74786 0.88221 0.88869 0.90313 0.87322 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.81 71.98 0.71 -1.52 16 2 C -0.15 -1.89 5.40 30.59 0.17 -1.72 16 3 C 0.13 2.67 2.09 30.59 0.06 2.73 16 4 H 0.07 1.95 8.10 -2.39 -0.02 1.93 16 5 O -0.57 -15.08 11.77 -131.50 -1.55 -16.63 16 6 C -0.13 -2.54 2.51 -11.54 -0.03 -2.57 16 7 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 8 C -0.14 -2.00 8.74 71.98 0.63 -1.37 16 9 C 0.50 16.32 6.72 87.66 0.59 16.91 16 10 O -0.56 -24.75 13.04 14.47 0.19 -24.56 16 11 N -0.65 -21.46 5.23 -303.10 -1.59 -23.04 16 12 C 0.02 1.09 6.26 38.57 0.24 1.33 16 13 C -0.09 -4.73 8.57 22.13 0.19 -4.54 16 14 C -0.22 -12.06 9.74 22.48 0.22 -11.84 16 15 C 0.07 4.16 5.50 -21.27 -0.12 4.05 16 16 C -0.50 -28.47 9.03 23.39 0.21 -28.26 16 17 H 0.07 3.85 7.85 -2.91 -0.02 3.82 16 18 C 0.03 1.69 5.31 85.24 0.45 2.14 16 19 N -0.84 -44.48 10.96 21.82 0.24 -44.24 16 20 Si 0.99 39.56 29.56 68.60 2.03 41.59 16 21 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 22 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 24 C -0.16 -8.26 8.57 22.48 0.19 -8.07 16 25 C -0.12 -5.39 9.90 22.13 0.22 -5.17 16 26 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.05 0.83 7.82 -2.39 -0.02 0.82 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 0.87 6.17 -2.38 -0.01 0.86 16 31 H 0.38 6.83 9.05 -74.06 -0.67 6.16 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 0.80 6.32 -2.39 -0.02 0.78 16 34 H 0.07 0.90 7.45 -2.39 -0.02 0.88 16 35 H 0.41 10.10 8.08 -92.71 -0.75 9.35 16 36 H 0.10 4.97 6.50 -2.91 -0.02 4.96 16 37 H 0.09 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 39 H 0.11 5.94 6.46 -2.91 -0.02 5.92 16 40 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -73.10 328.96 2.70 -70.40 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: -0.36 Total: 34.39 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 3.73 Total: -37.91 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: -1.35 Total: -67.28 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -1.36 Total: -41.19 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -73.10 2.70 -70.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899982634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.464 kcal (2) G-P(sol) polarization free energy of solvation -73.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds