Wall clock time and date at job start Mon Mar 30 2020 02:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47200 * 2 1 4 4 H 1.08999 * 109.46898 * 304.99585 * 3 2 1 5 5 O 1.42891 * 109.47446 * 65.00081 * 3 2 1 6 6 C 1.53010 * 109.46808 * 185.00223 * 3 2 1 7 7 H 1.08996 * 109.47037 * 59.99769 * 6 3 2 8 8 C 1.53002 * 109.46841 * 299.99639 * 6 3 2 9 9 C 1.50700 * 109.46766 * 179.97438 * 6 3 2 10 10 O 1.21284 * 120.00394 * 359.97438 * 9 6 3 11 11 N 1.34779 * 119.99726 * 179.97438 * 9 6 3 12 12 C 1.39243 * 119.99705 * 174.42191 * 11 9 6 13 13 C 1.39476 * 119.83077 * 325.29150 * 12 11 9 14 14 C 1.36378 * 120.16474 * 180.23581 * 13 12 11 15 15 C 1.40871 * 119.82844 * 359.49905 * 14 13 12 16 16 C 1.41155 * 120.16537 * 180.25241 * 15 14 13 17 17 H 1.07995 * 119.99659 * 34.63641 * 16 15 14 18 18 C 1.39909 * 119.99740 * 214.63619 * 16 15 14 19 19 N 1.30869 * 120.00324 * 5.45084 * 18 16 15 20 20 Si 1.86796 * 119.99617 * 185.44906 * 18 16 15 21 21 H 1.48503 * 109.47229 * 59.99942 * 20 18 16 22 22 H 1.48494 * 109.47157 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47265 * 300.00202 * 20 18 16 24 24 C 1.40870 * 119.67094 * 0.50035 * 15 14 13 25 25 C 1.36372 * 119.82822 * 359.75206 * 24 15 14 26 26 H 1.08999 * 109.46795 * 300.00459 * 1 2 3 27 27 H 1.08997 * 109.46896 * 60.00307 * 1 2 3 28 28 H 1.08990 * 109.47221 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46795 * 239.99540 * 2 1 3 30 30 H 1.09003 * 109.47056 * 120.00090 * 2 1 3 31 31 H 0.96701 * 114.00408 * 59.99515 * 5 3 2 32 32 H 1.09001 * 109.46897 * 300.00401 * 8 6 3 33 33 H 1.08998 * 109.47220 * 60.00014 * 8 6 3 34 34 H 1.09002 * 109.46788 * 180.02562 * 8 6 3 35 35 H 0.96993 * 119.99823 * 354.42298 * 11 9 6 36 36 H 1.07995 * 119.92120 * 359.95994 * 13 12 11 37 37 H 1.08003 * 120.08572 * 179.75006 * 14 13 12 38 38 H 0.96993 * 119.99975 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.08781 * 179.73128 * 24 15 14 40 40 H 1.08001 * 119.92080 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 8 1.6621 2.0814 1.2210 6 6 3.5650 1.4442 -0.1258 7 1 3.8532 0.9568 -1.0571 8 6 4.1750 0.6876 1.0559 9 6 4.0673 2.8650 -0.1264 10 8 3.2829 3.7856 -0.0357 11 7 5.3882 3.1127 -0.2278 12 6 5.8438 4.4232 -0.3454 13 6 5.0890 5.3593 -1.0521 14 6 5.5311 6.6436 -1.1756 15 6 6.7481 7.0262 -0.5783 16 6 7.2098 8.3548 -0.6971 17 1 6.5041 9.1722 -0.7123 18 6 8.5814 8.6126 -0.7952 19 7 9.4291 7.6196 -0.8843 20 14 9.2026 10.3742 -0.7991 21 1 8.8012 11.0435 0.4643 22 1 10.6832 10.3768 -0.9125 23 1 8.6171 11.1031 -1.9529 24 6 7.5048 6.0750 0.1339 25 6 7.0523 4.7933 0.2444 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.0142 1.6542 2.0138 32 1 3.8866 1.1750 1.9872 33 1 3.8116 -0.3401 1.0560 34 1 5.2613 0.6892 0.9665 35 1 6.0214 2.3780 -0.2188 36 1 4.1544 5.0654 -1.5064 37 1 4.9476 7.3664 -1.7266 38 1 10.3801 7.7984 -0.9520 39 1 8.4409 6.3599 0.5908 40 1 7.6314 4.0627 0.7897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899982635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:55 Heat of formation + Delta-G solvation = -82.421548 kcal Electronic energy + Delta-G solvation = -21209.173367 eV Core-core repulsion = 17987.980959 eV Total energy + Delta-G solvation = -3221.192408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.08945 -38.15236 -36.88137 -34.36770 -33.41474 -32.84057 -32.01413 -29.56801 -28.78590 -26.53850 -25.29379 -23.74118 -21.75379 -21.03274 -20.44682 -19.29583 -17.34337 -17.11215 -16.44789 -16.05955 -15.91361 -15.16742 -14.77390 -14.54627 -14.08625 -13.84498 -13.42439 -12.94999 -12.72022 -12.71699 -12.29549 -12.12452 -12.08640 -11.94734 -11.75732 -11.56609 -11.39278 -11.10595 -11.09003 -10.92815 -10.71069 -10.51721 -10.02145 -9.91573 -9.73059 -9.26824 -9.09971 -8.68493 -7.54239 -6.85451 -6.64859 -4.29853 2.59346 3.06758 3.08828 3.10486 3.13705 3.39805 3.69840 3.99393 4.37039 4.55379 4.68166 4.71164 4.87129 4.94929 5.02155 5.13846 5.38413 5.45699 5.54038 5.64063 5.67549 5.73340 5.78982 5.86739 6.08042 6.13884 6.19535 6.41252 6.78241 6.93963 7.08377 7.22837 7.30622 7.62506 7.71190 7.74240 7.89987 8.07318 8.30159 8.31578 8.63161 8.82707 8.93554 9.02649 10.31023 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.050146 B = 0.003301 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.233295 B = 8480.478002 C = 8803.277709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.157 4.157 3 C 0.128 3.872 4 H 0.102 0.898 5 O -0.539 6.539 6 C -0.146 4.146 7 H 0.100 0.900 8 C -0.150 4.150 9 C 0.501 3.499 10 O -0.512 6.512 11 N -0.656 5.656 12 C 0.009 3.991 13 C -0.083 4.083 14 C -0.204 4.204 15 C 0.106 3.894 16 C -0.465 4.465 17 H 0.076 0.924 18 C 0.072 3.928 19 N -0.812 5.812 20 Si 0.913 3.087 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.267 1.267 24 C -0.139 4.139 25 C -0.120 4.120 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.363 0.637 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.393 0.607 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.278 0.722 39 H 0.121 0.879 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.303 -15.463 2.047 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.195 4.195 3 C 0.068 3.932 4 H 0.120 0.880 5 O -0.343 6.343 6 C -0.168 4.168 7 H 0.118 0.882 8 C -0.208 4.208 9 C 0.287 3.713 10 O -0.386 6.386 11 N -0.300 5.300 12 C -0.083 4.083 13 C -0.103 4.103 14 C -0.225 4.225 15 C 0.103 3.897 16 C -0.496 4.496 17 H 0.094 0.906 18 C -0.143 4.143 19 N -0.439 5.439 20 Si 0.738 3.262 21 H -0.190 1.190 22 H -0.205 1.205 23 H -0.191 1.191 24 C -0.159 4.159 25 C -0.140 4.140 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.210 0.790 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.226 0.774 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.138 0.862 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.951 -14.446 1.654 16.573 hybrid contribution 1.195 -0.109 0.193 1.215 sum -6.756 -14.555 1.847 16.153 Atomic orbital electron populations 1.21693 0.95073 1.01173 1.02648 1.22316 0.97216 0.97318 1.02639 1.21683 0.90471 0.92099 0.88944 0.88005 1.86748 1.75994 1.56826 1.14779 1.22097 0.98445 0.94780 1.01499 0.88181 1.21838 1.01428 1.00040 0.97478 1.20323 0.82672 0.90629 0.77663 1.90744 1.54972 1.45677 1.47234 1.43072 1.06853 1.07653 1.72432 1.17213 0.98177 0.84065 1.08889 1.20241 0.98235 0.93681 0.98145 1.20795 1.00504 0.95041 1.06117 1.17667 0.90334 0.93543 0.88148 1.19458 0.91878 0.93194 1.45086 0.90602 1.25848 0.96821 0.99047 0.92574 1.69772 1.03769 1.32754 1.37620 0.86301 0.77711 0.82428 0.79805 1.19004 1.20463 1.19129 1.20931 1.01395 0.92109 1.01420 1.20266 0.95816 0.96914 1.01051 0.91981 0.92680 0.93024 0.91148 0.91434 0.79031 0.91857 0.91303 0.91656 0.77391 0.88180 0.88590 0.91089 0.86151 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.81 37.16 0.36 -0.88 16 2 C -0.16 -1.27 5.11 -26.73 -0.14 -1.41 16 3 C 0.13 1.47 2.31 -26.73 -0.06 1.41 16 4 H 0.10 1.36 8.10 -51.93 -0.42 0.94 16 5 O -0.54 -7.32 11.73 -53.47 -0.63 -7.94 16 6 C -0.15 -1.65 2.63 -91.77 -0.24 -1.89 16 7 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 8 C -0.15 -1.29 8.43 37.16 0.31 -0.97 16 9 C 0.50 8.56 6.72 -10.98 -0.07 8.49 16 10 O -0.51 -11.15 13.05 -12.68 -0.17 -11.31 16 11 N -0.66 -11.50 5.23 -9.74 -0.05 -11.55 16 12 C 0.01 0.20 6.26 -83.57 -0.52 -0.33 16 13 C -0.08 -2.03 8.57 -39.79 -0.34 -2.37 16 14 C -0.20 -5.29 9.74 -39.26 -0.38 -5.67 16 15 C 0.11 2.87 5.50 -106.80 -0.59 2.29 16 16 C -0.47 -12.61 9.03 -37.85 -0.34 -12.95 16 17 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 18 C 0.07 1.85 5.31 -17.34 -0.09 1.75 16 19 N -0.81 -21.21 10.96 55.55 0.61 -20.60 16 20 Si 0.91 19.13 29.56 -169.99 -5.03 14.10 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 C -0.14 -3.60 8.57 -39.26 -0.34 -3.94 16 25 C -0.12 -2.77 9.90 -39.79 -0.39 -3.17 16 26 H 0.06 0.57 7.82 -51.93 -0.41 0.16 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.46 6.71 -51.93 -0.35 0.12 16 31 H 0.36 3.67 7.33 45.56 0.33 4.00 16 32 H 0.06 0.57 6.78 -51.93 -0.35 0.22 16 33 H 0.07 0.43 6.54 -51.93 -0.34 0.09 16 34 H 0.06 0.53 7.45 -51.93 -0.39 0.14 16 35 H 0.39 5.45 8.08 -40.82 -0.33 5.12 16 36 H 0.10 2.41 6.50 -52.49 -0.34 2.07 16 37 H 0.10 2.36 8.06 -52.48 -0.42 1.94 16 38 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 39 H 0.12 3.21 6.46 -52.49 -0.34 2.87 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -31.84 326.34 -8.19 -40.02 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -5.01 Total: 12.00 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -2.83 Total: -19.64 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.56 Total: -32.15 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.79 Total: -19.26 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.84 -8.19 -40.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899982635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.397 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds