Wall clock time and date at job start Mon Mar 30 2020 02:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47200 * 2 1 4 4 H 1.08999 * 109.46898 * 304.99585 * 3 2 1 5 5 O 1.42891 * 109.47446 * 65.00081 * 3 2 1 6 6 C 1.53010 * 109.46808 * 185.00223 * 3 2 1 7 7 H 1.08996 * 109.47037 * 59.99769 * 6 3 2 8 8 C 1.53002 * 109.46841 * 299.99639 * 6 3 2 9 9 C 1.50700 * 109.46766 * 179.97438 * 6 3 2 10 10 O 1.21284 * 120.00394 * 359.97438 * 9 6 3 11 11 N 1.34779 * 119.99726 * 179.97438 * 9 6 3 12 12 C 1.39243 * 119.99705 * 174.42191 * 11 9 6 13 13 C 1.39476 * 119.83077 * 325.29150 * 12 11 9 14 14 C 1.36378 * 120.16474 * 180.23581 * 13 12 11 15 15 C 1.40871 * 119.82844 * 359.49905 * 14 13 12 16 16 C 1.41155 * 120.16537 * 180.25241 * 15 14 13 17 17 H 1.07995 * 119.99659 * 34.63641 * 16 15 14 18 18 C 1.39909 * 119.99740 * 214.63619 * 16 15 14 19 19 N 1.30869 * 120.00324 * 5.45084 * 18 16 15 20 20 Si 1.86796 * 119.99617 * 185.44906 * 18 16 15 21 21 H 1.48503 * 109.47229 * 59.99942 * 20 18 16 22 22 H 1.48494 * 109.47157 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47265 * 300.00202 * 20 18 16 24 24 C 1.40870 * 119.67094 * 0.50035 * 15 14 13 25 25 C 1.36372 * 119.82822 * 359.75206 * 24 15 14 26 26 H 1.08999 * 109.46795 * 300.00459 * 1 2 3 27 27 H 1.08997 * 109.46896 * 60.00307 * 1 2 3 28 28 H 1.08990 * 109.47221 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46795 * 239.99540 * 2 1 3 30 30 H 1.09003 * 109.47056 * 120.00090 * 2 1 3 31 31 H 0.96701 * 114.00408 * 59.99515 * 5 3 2 32 32 H 1.09001 * 109.46897 * 300.00401 * 8 6 3 33 33 H 1.08998 * 109.47220 * 60.00014 * 8 6 3 34 34 H 1.09002 * 109.46788 * 180.02562 * 8 6 3 35 35 H 0.96993 * 119.99823 * 354.42298 * 11 9 6 36 36 H 1.07995 * 119.92120 * 359.95994 * 13 12 11 37 37 H 1.08003 * 120.08572 * 179.75006 * 14 13 12 38 38 H 0.96993 * 119.99975 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.08781 * 179.73128 * 24 15 14 40 40 H 1.08001 * 119.92080 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 8 1.6621 2.0814 1.2210 6 6 3.5650 1.4442 -0.1258 7 1 3.8532 0.9568 -1.0571 8 6 4.1750 0.6876 1.0559 9 6 4.0673 2.8650 -0.1264 10 8 3.2829 3.7856 -0.0357 11 7 5.3882 3.1127 -0.2278 12 6 5.8438 4.4232 -0.3454 13 6 5.0890 5.3593 -1.0521 14 6 5.5311 6.6436 -1.1756 15 6 6.7481 7.0262 -0.5783 16 6 7.2098 8.3548 -0.6971 17 1 6.5041 9.1722 -0.7123 18 6 8.5814 8.6126 -0.7952 19 7 9.4291 7.6196 -0.8843 20 14 9.2026 10.3742 -0.7991 21 1 8.8012 11.0435 0.4643 22 1 10.6832 10.3768 -0.9125 23 1 8.6171 11.1031 -1.9529 24 6 7.5048 6.0750 0.1339 25 6 7.0523 4.7933 0.2444 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.0142 1.6542 2.0138 32 1 3.8866 1.1750 1.9872 33 1 3.8116 -0.3401 1.0560 34 1 5.2613 0.6892 0.9665 35 1 6.0214 2.3780 -0.2188 36 1 4.1544 5.0654 -1.5064 37 1 4.9476 7.3664 -1.7266 38 1 10.3801 7.7984 -0.9520 39 1 8.4409 6.3599 0.5908 40 1 7.6314 4.0627 0.7897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899982635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:55 Heat of formation + Delta-G solvation = -103.122553 kcal Electronic energy + Delta-G solvation = -21210.071030 eV Core-core repulsion = 17987.980959 eV Total energy + Delta-G solvation = -3222.090071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.45440 -39.58060 -38.37221 -36.10076 -34.85250 -34.05418 -32.92437 -31.50038 -30.63050 -27.30256 -27.01534 -24.91988 -23.36320 -22.64833 -21.76334 -20.66230 -19.26208 -18.53044 -17.78580 -17.24073 -16.98433 -16.84605 -15.96282 -15.70136 -15.54402 -15.37612 -14.75380 -14.49421 -14.24378 -14.01926 -13.68173 -13.41542 -13.35991 -13.17350 -12.81352 -12.79652 -12.73221 -12.64682 -12.38627 -12.34810 -11.85411 -11.71785 -11.59189 -11.54256 -11.12723 -10.87502 -10.71355 -10.33690 -9.50263 -8.74566 -8.55698 -6.31488 0.79855 1.09985 1.39180 1.46528 1.50651 1.88522 2.24058 2.36711 2.79365 3.52869 3.63229 3.69101 3.78866 4.04635 4.22116 4.30171 4.33564 4.38128 4.46139 4.63254 4.79278 4.87652 4.90262 4.90958 5.05791 5.10296 5.12599 5.13842 5.21636 5.32967 5.41562 5.42985 5.44248 5.65566 5.87243 6.02068 6.10850 6.37151 6.64583 6.77731 6.92871 6.94428 6.98703 7.47934 8.41899 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.050146 B = 0.003301 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.233295 B = 8480.478002 C = 8803.277709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.146 4.146 3 C 0.124 3.876 4 H 0.073 0.927 5 O -0.568 6.568 6 C -0.132 4.132 7 H 0.129 0.871 8 C -0.148 4.148 9 C 0.498 3.502 10 O -0.563 6.563 11 N -0.649 5.649 12 C 0.025 3.975 13 C -0.096 4.096 14 C -0.223 4.223 15 C 0.073 3.927 16 C -0.505 4.505 17 H 0.070 0.930 18 C 0.033 3.967 19 N -0.839 5.839 20 Si 0.985 3.015 21 H -0.262 1.262 22 H -0.265 1.265 23 H -0.264 1.264 24 C -0.155 4.155 25 C -0.118 4.118 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.376 0.624 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.415 0.585 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.286 0.714 39 H 0.109 0.891 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 -18.028 2.483 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.183 4.183 3 C 0.065 3.935 4 H 0.091 0.909 5 O -0.375 6.375 6 C -0.154 4.154 7 H 0.147 0.853 8 C -0.205 4.205 9 C 0.286 3.714 10 O -0.441 6.441 11 N -0.295 5.295 12 C -0.068 4.068 13 C -0.116 4.116 14 C -0.243 4.243 15 C 0.071 3.929 16 C -0.536 4.536 17 H 0.088 0.912 18 C -0.180 4.180 19 N -0.467 5.467 20 Si 0.806 3.194 21 H -0.186 1.186 22 H -0.190 1.190 23 H -0.188 1.188 24 C -0.175 4.175 25 C -0.138 4.138 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.225 0.775 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.252 0.748 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.127 0.873 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.316 -17.077 2.096 18.696 hybrid contribution 0.887 0.553 0.066 1.047 sum -6.430 -16.524 2.162 17.862 Atomic orbital electron populations 1.21709 0.95581 1.01989 1.01527 1.22237 0.96695 0.94813 1.04562 1.21733 0.90550 0.93833 0.87415 0.90925 1.86710 1.76582 1.58169 1.16044 1.22123 0.98131 0.90757 1.04353 0.85327 1.21897 1.01926 1.01225 0.95487 1.21475 0.81677 0.92787 0.75422 1.90732 1.56126 1.48033 1.49163 1.43044 1.07914 1.06254 1.72298 1.17294 0.97224 0.85947 1.06366 1.20348 0.98559 0.93764 0.98923 1.20918 1.00653 0.95928 1.06761 1.17972 0.91208 0.94421 0.89303 1.19672 0.93101 0.93240 1.47550 0.91204 1.26672 0.96295 1.03535 0.91496 1.69821 1.04327 1.34789 1.37718 0.85205 0.77628 0.76735 0.79791 1.18611 1.18955 1.18831 1.20933 1.01195 0.93374 1.02028 1.20540 0.96141 0.96565 1.00603 0.93329 0.93706 0.91164 0.89249 0.89268 0.77504 0.92538 0.87977 0.90700 0.74789 0.88305 0.88841 0.90308 0.87316 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.81 71.98 0.71 -1.52 16 2 C -0.15 -1.87 5.11 30.59 0.16 -1.72 16 3 C 0.12 2.65 2.31 30.60 0.07 2.72 16 4 H 0.07 1.95 8.10 -2.39 -0.02 1.93 16 5 O -0.57 -15.01 11.73 -131.54 -1.54 -16.56 16 6 C -0.13 -2.58 2.63 -11.54 -0.03 -2.61 16 7 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 8 C -0.15 -1.89 8.43 71.98 0.61 -1.29 16 9 C 0.50 16.31 6.72 87.66 0.59 16.90 16 10 O -0.56 -24.74 13.05 14.40 0.19 -24.55 16 11 N -0.65 -21.45 5.23 -303.11 -1.59 -23.03 16 12 C 0.03 1.12 6.26 38.56 0.24 1.37 16 13 C -0.10 -4.79 8.57 22.13 0.19 -4.60 16 14 C -0.22 -12.04 9.74 22.48 0.22 -11.82 16 15 C 0.07 4.15 5.50 -21.27 -0.12 4.03 16 16 C -0.50 -28.47 9.03 23.39 0.21 -28.26 16 17 H 0.07 3.84 7.85 -2.91 -0.02 3.82 16 18 C 0.03 1.69 5.31 85.24 0.45 2.14 16 19 N -0.84 -44.47 10.96 21.82 0.24 -44.23 16 20 Si 0.99 39.55 29.56 68.60 2.03 41.58 16 21 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 22 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 24 C -0.16 -8.24 8.57 22.48 0.19 -8.05 16 25 C -0.12 -5.38 9.90 22.13 0.22 -5.16 16 26 H 0.05 0.84 7.82 -2.39 -0.02 0.82 16 27 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.80 6.71 -2.39 -0.02 0.78 16 31 H 0.38 7.05 7.33 -74.06 -0.54 6.51 16 32 H 0.06 0.83 6.78 -2.39 -0.02 0.81 16 33 H 0.10 0.70 6.54 -2.39 -0.02 0.68 16 34 H 0.07 0.85 7.45 -2.39 -0.02 0.84 16 35 H 0.41 10.09 8.08 -92.71 -0.75 9.34 16 36 H 0.10 4.90 6.50 -2.91 -0.02 4.88 16 37 H 0.09 4.90 8.06 -2.91 -0.02 4.87 16 38 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 39 H 0.11 5.94 6.46 -2.91 -0.02 5.93 16 40 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -72.88 326.34 2.80 -70.08 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: -0.23 Total: 34.58 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 3.71 Total: -37.87 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -1.35 Total: -67.26 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -1.36 Total: -41.11 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -72.88 2.80 -70.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899982635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.047 kcal (2) G-P(sol) polarization free energy of solvation -72.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds