Wall clock time and date at job start Mon Mar 30 2020 02:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47312 * 2 1 4 4 H 1.09003 * 109.46905 * 54.99977 * 3 2 1 5 5 O 1.42898 * 109.47104 * 295.00248 * 3 2 1 6 6 C 1.52992 * 109.47211 * 175.00056 * 3 2 1 7 7 H 1.09006 * 109.47443 * 304.99944 * 6 3 2 8 8 C 1.52991 * 109.47296 * 65.00033 * 6 3 2 9 9 C 1.50698 * 109.47179 * 185.00415 * 6 3 2 10 10 O 1.21291 * 119.99917 * 359.97438 * 9 6 3 11 11 N 1.34779 * 120.00623 * 180.02562 * 9 6 3 12 12 C 1.39236 * 120.00601 * 175.70699 * 11 9 6 13 13 C 1.39481 * 119.82929 * 215.02155 * 12 11 9 14 14 C 1.36380 * 120.16382 * 179.75694 * 13 12 11 15 15 C 1.40868 * 119.82911 * 0.51133 * 14 13 12 16 16 C 1.41157 * 120.16660 * 179.72044 * 15 14 13 17 17 H 1.08000 * 120.00192 * 214.80021 * 16 15 14 18 18 C 1.39906 * 119.99661 * 34.79513 * 16 15 14 19 19 N 1.30871 * 120.00270 * 355.57534 * 18 16 15 20 20 Si 1.86801 * 119.99736 * 175.57508 * 18 16 15 21 21 H 1.48495 * 109.47383 * 89.99946 * 20 18 16 22 22 H 1.48504 * 109.47061 * 210.00097 * 20 18 16 23 23 H 1.48505 * 109.46906 * 329.99749 * 20 18 16 24 24 C 1.40872 * 119.67417 * 359.74293 * 15 14 13 25 25 C 1.36377 * 119.82345 * 359.97438 * 24 15 14 26 26 H 1.09000 * 109.47322 * 60.00238 * 1 2 3 27 27 H 1.09000 * 109.47126 * 299.99967 * 1 2 3 28 28 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47120 * 120.00521 * 2 1 3 30 30 H 1.09000 * 109.47126 * 240.00033 * 2 1 3 31 31 H 0.96691 * 114.00239 * 299.99682 * 5 3 2 32 32 H 1.08993 * 109.47345 * 299.99793 * 8 6 3 33 33 H 1.09007 * 109.46986 * 60.00162 * 8 6 3 34 34 H 1.09007 * 109.47455 * 179.97438 * 8 6 3 35 35 H 0.97000 * 119.99189 * 355.70341 * 11 9 6 36 36 H 1.07998 * 119.91864 * 0.02562 * 13 12 11 37 37 H 1.08003 * 120.08659 * 180.24760 * 14 13 12 38 38 H 0.96999 * 119.99738 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.08896 * 179.97438 * 24 15 14 40 40 H 1.08000 * 119.91553 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6620 2.0814 -1.2210 6 6 3.5648 1.4443 0.1257 7 1 3.8571 0.8800 1.0113 8 6 4.1797 0.7976 -1.1170 9 6 4.0570 2.8632 0.2493 10 8 3.2660 3.7827 0.2375 11 7 5.3761 3.1108 0.3720 12 6 5.8389 4.4238 0.3962 13 6 7.0655 4.7381 -0.1887 14 6 7.5230 6.0228 -0.1732 15 6 6.7583 7.0315 0.4450 16 6 7.2278 8.3624 0.4704 17 1 7.0243 8.9907 1.3249 18 6 7.9568 8.8677 -0.6116 19 7 8.2781 8.0825 -1.6080 20 14 8.4717 10.6632 -0.6338 21 1 9.8028 10.8045 0.0091 22 1 8.5474 11.1391 -2.0385 23 1 7.4740 11.4735 0.1102 24 6 5.5229 6.7053 1.0383 25 6 5.0759 5.4172 1.0098 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.0141 1.6543 -2.0138 32 1 3.8238 -0.2287 -1.2063 33 1 3.8875 1.3620 -2.0026 34 1 5.2661 0.7993 -1.0276 35 1 6.0031 2.3742 0.4434 36 1 7.6524 3.9629 -0.6588 37 1 8.4711 6.2654 -0.6300 38 1 8.7832 8.4330 -2.3583 39 1 4.9314 7.4733 1.5145 40 1 4.1292 5.1654 1.4645 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899982636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:58 Heat of formation + Delta-G solvation = -81.031751 kcal Electronic energy + Delta-G solvation = -21248.722167 eV Core-core repulsion = 18027.590025 eV Total energy + Delta-G solvation = -3221.132142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.08603 -38.14954 -36.87917 -34.36689 -33.37426 -32.84228 -32.02456 -29.54038 -28.75746 -26.55747 -25.28829 -23.68467 -21.72656 -21.03699 -20.42641 -19.32155 -17.34643 -17.10078 -16.39591 -16.03720 -15.93864 -15.16852 -14.80685 -14.59621 -14.04678 -13.75981 -13.44370 -12.93374 -12.70990 -12.66287 -12.29858 -12.13314 -12.05106 -11.95051 -11.69519 -11.53599 -11.32528 -11.12963 -11.08715 -10.93309 -10.70597 -10.67855 -9.99158 -9.90592 -9.45607 -9.36451 -9.00894 -8.78020 -7.51424 -6.82112 -6.58849 -4.31162 2.60997 3.05989 3.10761 3.12452 3.16285 3.37236 3.71541 4.00496 4.36721 4.56881 4.69572 4.73085 4.88068 4.97382 5.03293 5.14082 5.38922 5.46562 5.56019 5.65089 5.67458 5.74010 5.81549 5.89083 6.08831 6.15363 6.21589 6.48662 6.80349 6.96182 7.10304 7.25103 7.33420 7.67020 7.71559 7.79068 7.92187 8.09691 8.31292 8.35427 8.66065 8.83303 8.95896 9.04355 10.32292 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041263 B = 0.003397 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.410983 B = 8240.811078 C = 8427.787188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.157 4.157 3 C 0.127 3.873 4 H 0.104 0.896 5 O -0.542 6.542 6 C -0.145 4.145 7 H 0.099 0.901 8 C -0.150 4.150 9 C 0.501 3.499 10 O -0.514 6.514 11 N -0.655 5.655 12 C 0.007 3.993 13 C -0.123 4.123 14 C -0.141 4.141 15 C 0.099 3.901 16 C -0.461 4.461 17 H 0.075 0.925 18 C 0.069 3.931 19 N -0.813 5.813 20 Si 0.915 3.085 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.205 4.205 25 C -0.087 4.087 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.364 0.636 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.393 0.607 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.277 0.723 39 H 0.095 0.905 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.962 -15.973 0.918 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C 0.068 3.932 4 H 0.121 0.879 5 O -0.346 6.346 6 C -0.167 4.167 7 H 0.117 0.883 8 C -0.208 4.208 9 C 0.287 3.713 10 O -0.389 6.389 11 N -0.298 5.298 12 C -0.085 4.085 13 C -0.143 4.143 14 C -0.161 4.161 15 C 0.096 3.904 16 C -0.492 4.492 17 H 0.093 0.907 18 C -0.145 4.145 19 N -0.440 5.440 20 Si 0.740 3.260 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.225 4.225 25 C -0.106 4.106 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.211 0.789 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.226 0.774 36 H 0.108 0.892 37 H 0.149 0.851 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.744 -14.901 1.079 16.391 hybrid contribution 0.971 -0.045 -0.497 1.092 sum -5.772 -14.945 0.582 16.032 Atomic orbital electron populations 1.21694 0.95059 1.01169 1.02665 1.22304 0.97240 0.97293 1.02606 1.21697 0.90510 0.92105 0.88933 0.87863 1.86739 1.76059 1.56927 1.14867 1.22072 0.98486 0.95084 1.01073 0.88292 1.21818 1.01494 1.00491 0.96954 1.20353 0.82685 0.90636 0.77601 1.90725 1.54475 1.45599 1.48071 1.43028 1.07195 1.07419 1.72183 1.17280 0.98195 0.83264 1.09798 1.20310 0.95776 0.97093 1.01116 1.21188 1.01231 0.90247 1.03453 1.17718 0.89622 0.93214 0.89812 1.19489 1.29617 0.97061 1.03075 0.90663 1.25872 0.93639 1.00084 0.94949 1.69763 1.30545 1.36518 1.07218 0.86201 0.79503 0.82136 0.78147 1.19563 1.20325 1.18740 1.20813 0.97282 0.95108 1.09256 1.20394 0.98614 0.92940 0.98701 0.91974 0.92667 0.93023 0.91159 0.91497 0.78917 0.91417 0.91708 0.91566 0.77395 0.89211 0.85074 0.91204 0.88640 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.81 37.16 0.36 -0.90 16 2 C -0.16 -1.29 5.24 -26.73 -0.14 -1.43 16 3 C 0.13 1.49 2.26 -26.74 -0.06 1.43 16 4 H 0.10 1.41 7.96 -51.93 -0.41 1.00 16 5 O -0.54 -7.49 12.00 -49.66 -0.60 -8.09 16 6 C -0.15 -1.66 2.56 -91.78 -0.23 -1.89 16 7 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 8 C -0.15 -1.36 8.42 37.15 0.31 -1.04 16 9 C 0.50 8.66 6.87 -10.99 -0.08 8.58 16 10 O -0.51 -11.33 12.84 -8.88 -0.11 -11.44 16 11 N -0.65 -11.47 5.16 -9.74 -0.05 -11.52 16 12 C 0.01 0.16 6.31 -83.57 -0.53 -0.37 16 13 C -0.12 -2.83 9.90 -39.79 -0.39 -3.23 16 14 C -0.14 -3.68 8.62 -39.26 -0.34 -4.02 16 15 C 0.10 2.70 5.55 -106.80 -0.59 2.10 16 16 C -0.46 -12.52 9.02 -37.85 -0.34 -12.86 16 17 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 18 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 19 N -0.81 -21.45 10.60 55.55 0.59 -20.86 16 20 Si 0.92 19.29 29.56 -169.99 -5.03 14.27 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 23 H -0.26 -5.53 7.11 56.52 0.40 -5.12 16 24 C -0.20 -5.31 9.74 -39.26 -0.38 -5.69 16 25 C -0.09 -2.13 8.61 -39.79 -0.34 -2.47 16 26 H 0.06 0.58 7.82 -51.93 -0.41 0.18 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.47 6.81 -51.93 -0.35 0.12 16 31 H 0.36 3.77 7.19 45.56 0.33 4.10 16 32 H 0.07 0.45 6.68 -51.93 -0.35 0.10 16 33 H 0.06 0.64 6.72 -51.93 -0.35 0.30 16 34 H 0.07 0.57 7.66 -51.92 -0.40 0.17 16 35 H 0.39 5.37 8.37 -40.82 -0.34 5.03 16 36 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.13 3.52 6.13 -52.48 -0.32 3.20 16 38 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 39 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 40 H 0.11 2.59 6.22 -52.49 -0.33 2.27 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -32.10 326.21 -8.14 -40.24 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -5.01 Total: 12.60 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -2.85 Total: -20.11 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.54 Total: -32.38 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.71 Total: -19.53 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.10 -8.14 -40.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899982636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.796 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds