Wall clock time and date at job start Mon Mar 30 2020 02:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47312 * 2 1 4 4 H 1.09003 * 109.46905 * 54.99977 * 3 2 1 5 5 O 1.42898 * 109.47104 * 295.00248 * 3 2 1 6 6 C 1.52992 * 109.47211 * 175.00056 * 3 2 1 7 7 H 1.09006 * 109.47443 * 304.99944 * 6 3 2 8 8 C 1.52991 * 109.47296 * 65.00033 * 6 3 2 9 9 C 1.50698 * 109.47179 * 185.00415 * 6 3 2 10 10 O 1.21291 * 119.99917 * 359.97438 * 9 6 3 11 11 N 1.34779 * 120.00623 * 180.02562 * 9 6 3 12 12 C 1.39236 * 120.00601 * 175.70699 * 11 9 6 13 13 C 1.39481 * 119.82929 * 215.02155 * 12 11 9 14 14 C 1.36380 * 120.16382 * 179.75694 * 13 12 11 15 15 C 1.40868 * 119.82911 * 0.51133 * 14 13 12 16 16 C 1.41157 * 120.16660 * 179.72044 * 15 14 13 17 17 H 1.08000 * 120.00192 * 214.80021 * 16 15 14 18 18 C 1.39906 * 119.99661 * 34.79513 * 16 15 14 19 19 N 1.30871 * 120.00270 * 355.57534 * 18 16 15 20 20 Si 1.86801 * 119.99736 * 175.57508 * 18 16 15 21 21 H 1.48495 * 109.47383 * 89.99946 * 20 18 16 22 22 H 1.48504 * 109.47061 * 210.00097 * 20 18 16 23 23 H 1.48505 * 109.46906 * 329.99749 * 20 18 16 24 24 C 1.40872 * 119.67417 * 359.74293 * 15 14 13 25 25 C 1.36377 * 119.82345 * 359.97438 * 24 15 14 26 26 H 1.09000 * 109.47322 * 60.00238 * 1 2 3 27 27 H 1.09000 * 109.47126 * 299.99967 * 1 2 3 28 28 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47120 * 120.00521 * 2 1 3 30 30 H 1.09000 * 109.47126 * 240.00033 * 2 1 3 31 31 H 0.96691 * 114.00239 * 299.99682 * 5 3 2 32 32 H 1.08993 * 109.47345 * 299.99793 * 8 6 3 33 33 H 1.09007 * 109.46986 * 60.00162 * 8 6 3 34 34 H 1.09007 * 109.47455 * 179.97438 * 8 6 3 35 35 H 0.97000 * 119.99189 * 355.70341 * 11 9 6 36 36 H 1.07998 * 119.91864 * 0.02562 * 13 12 11 37 37 H 1.08003 * 120.08659 * 180.24760 * 14 13 12 38 38 H 0.96999 * 119.99738 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.08896 * 179.97438 * 24 15 14 40 40 H 1.08000 * 119.91553 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6620 2.0814 -1.2210 6 6 3.5648 1.4443 0.1257 7 1 3.8571 0.8800 1.0113 8 6 4.1797 0.7976 -1.1170 9 6 4.0570 2.8632 0.2493 10 8 3.2660 3.7827 0.2375 11 7 5.3761 3.1108 0.3720 12 6 5.8389 4.4238 0.3962 13 6 7.0655 4.7381 -0.1887 14 6 7.5230 6.0228 -0.1732 15 6 6.7583 7.0315 0.4450 16 6 7.2278 8.3624 0.4704 17 1 7.0243 8.9907 1.3249 18 6 7.9568 8.8677 -0.6116 19 7 8.2781 8.0825 -1.6080 20 14 8.4717 10.6632 -0.6338 21 1 9.8028 10.8045 0.0091 22 1 8.5474 11.1391 -2.0385 23 1 7.4740 11.4735 0.1102 24 6 5.5229 6.7053 1.0383 25 6 5.0759 5.4172 1.0098 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.0141 1.6543 -2.0138 32 1 3.8238 -0.2287 -1.2063 33 1 3.8875 1.3620 -2.0026 34 1 5.2661 0.7993 -1.0276 35 1 6.0031 2.3742 0.4434 36 1 7.6524 3.9629 -0.6588 37 1 8.4711 6.2654 -0.6300 38 1 8.7832 8.4330 -2.3583 39 1 4.9314 7.4733 1.5145 40 1 4.1292 5.1654 1.4645 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899982636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:58 Heat of formation + Delta-G solvation = -102.205762 kcal Electronic energy + Delta-G solvation = -21249.640341 eV Core-core repulsion = 18027.590025 eV Total energy + Delta-G solvation = -3222.050316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.46451 -39.57564 -38.39307 -36.11048 -34.85114 -34.03492 -32.95807 -31.47606 -30.61436 -27.34353 -27.02759 -24.87071 -23.33881 -22.63965 -21.77517 -20.69885 -19.27890 -18.51419 -17.76609 -17.22189 -16.98252 -16.90477 -16.01260 -15.73945 -15.56038 -15.30946 -14.73706 -14.50120 -14.26546 -13.99252 -13.60434 -13.41784 -13.26797 -13.18406 -12.87212 -12.81009 -12.76028 -12.70079 -12.47926 -12.36327 -11.79246 -11.71940 -11.55492 -11.39931 -11.19138 -10.87143 -10.71140 -10.39427 -9.47548 -8.72269 -8.50863 -6.33654 0.80477 1.12457 1.38681 1.45037 1.53098 1.85700 2.23463 2.36893 2.80319 3.51840 3.61643 3.69476 3.77939 4.05038 4.22576 4.29734 4.33571 4.39503 4.51803 4.63437 4.79546 4.87160 4.89612 4.92731 5.05975 5.11676 5.14070 5.14864 5.21323 5.35231 5.41301 5.43970 5.44602 5.68679 5.91210 6.02873 6.14201 6.38943 6.66949 6.77548 6.91317 6.96048 6.99859 7.47617 8.41904 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041263 B = 0.003397 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.410983 B = 8240.811078 C = 8427.787188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.145 4.145 3 C 0.123 3.877 4 H 0.073 0.927 5 O -0.571 6.571 6 C -0.131 4.131 7 H 0.133 0.867 8 C -0.148 4.148 9 C 0.496 3.504 10 O -0.566 6.566 11 N -0.647 5.647 12 C 0.024 3.976 13 C -0.120 4.120 14 C -0.158 4.158 15 C 0.066 3.934 16 C -0.499 4.499 17 H 0.071 0.929 18 C 0.027 3.973 19 N -0.842 5.842 20 Si 0.989 3.011 21 H -0.258 1.258 22 H -0.269 1.269 23 H -0.264 1.264 24 C -0.222 4.222 25 C -0.100 4.100 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.377 0.623 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.416 0.584 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.285 0.715 39 H 0.093 0.907 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 -18.556 0.422 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.182 4.182 3 C 0.064 3.936 4 H 0.092 0.908 5 O -0.378 6.378 6 C -0.152 4.152 7 H 0.151 0.849 8 C -0.205 4.205 9 C 0.285 3.715 10 O -0.444 6.444 11 N -0.292 5.292 12 C -0.070 4.070 13 C -0.140 4.140 14 C -0.178 4.178 15 C 0.064 3.936 16 C -0.530 4.530 17 H 0.089 0.911 18 C -0.184 4.184 19 N -0.470 5.470 20 Si 0.810 3.190 21 H -0.183 1.183 22 H -0.193 1.193 23 H -0.188 1.188 24 C -0.242 4.242 25 C -0.120 4.120 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.226 0.774 32 H 0.121 0.879 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.253 0.747 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.210 -17.553 0.586 18.628 hybrid contribution 0.707 0.617 -0.329 0.994 sum -5.503 -16.936 0.257 17.809 Atomic orbital electron populations 1.21711 0.95596 1.02004 1.01512 1.22225 0.96697 0.94731 1.04589 1.21751 0.90651 0.93869 0.87339 0.90848 1.86700 1.76671 1.58305 1.16168 1.22106 0.98113 0.91013 1.03966 0.84881 1.21876 1.01963 1.01932 0.94760 1.21529 0.81724 0.92820 0.75404 1.90712 1.55695 1.47999 1.50043 1.42988 1.08197 1.06041 1.71998 1.17352 0.97271 0.85186 1.07186 1.20574 0.96135 0.96881 1.00409 1.21188 1.01032 0.91437 1.04189 1.18025 0.90420 0.94049 0.91102 1.19712 1.31717 0.97513 1.04080 0.91076 1.26738 0.93050 1.04649 0.94000 1.69822 1.30909 1.38471 1.07752 0.85100 0.79310 0.76134 0.78483 1.18265 1.19344 1.18823 1.20927 0.97387 0.95972 1.09929 1.20503 0.98884 0.93163 0.99471 0.93392 0.93691 0.91118 0.89131 0.89335 0.77398 0.87880 0.92940 0.90665 0.74666 0.85616 0.86247 0.90468 0.88907 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.81 71.98 0.71 -1.56 16 2 C -0.14 -1.89 5.24 30.59 0.16 -1.73 16 3 C 0.12 2.68 2.26 30.59 0.07 2.74 16 4 H 0.07 2.01 7.96 -2.39 -0.02 1.99 16 5 O -0.57 -15.44 12.00 -135.19 -1.62 -17.06 16 6 C -0.13 -2.57 2.56 -11.55 -0.03 -2.60 16 7 H 0.13 1.79 8.14 -2.38 -0.02 1.77 16 8 C -0.15 -2.04 8.42 71.98 0.61 -1.44 16 9 C 0.50 16.45 6.87 87.66 0.60 17.05 16 10 O -0.57 -25.25 12.84 10.73 0.14 -25.12 16 11 N -0.65 -21.33 5.16 -303.11 -1.57 -22.90 16 12 C 0.02 1.06 6.31 38.56 0.24 1.30 16 13 C -0.12 -5.45 9.90 22.14 0.22 -5.23 16 14 C -0.16 -8.43 8.62 22.48 0.19 -8.23 16 15 C 0.07 3.77 5.55 -21.27 -0.12 3.65 16 16 C -0.50 -28.18 9.02 23.39 0.21 -27.97 16 17 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 18 C 0.03 1.43 5.42 85.24 0.46 1.89 16 19 N -0.84 -45.17 10.60 21.82 0.23 -44.94 16 20 Si 0.99 39.96 29.56 68.60 2.03 41.98 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 22 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 24 C -0.22 -12.05 9.74 22.48 0.22 -11.83 16 25 C -0.10 -5.04 8.61 22.13 0.19 -4.85 16 26 H 0.05 0.85 7.82 -2.39 -0.02 0.83 16 27 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 0.81 6.81 -2.39 -0.02 0.80 16 31 H 0.38 7.29 7.19 -74.06 -0.53 6.76 16 32 H 0.10 0.76 6.68 -2.39 -0.02 0.74 16 33 H 0.05 0.88 6.72 -2.38 -0.02 0.86 16 34 H 0.07 0.94 7.66 -2.38 -0.02 0.92 16 35 H 0.42 9.90 8.37 -92.71 -0.78 9.13 16 36 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.12 6.58 6.13 -2.91 -0.02 6.56 16 38 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 39 H 0.09 4.88 8.06 -2.91 -0.02 4.86 16 40 H 0.10 5.24 6.22 -2.91 -0.02 5.22 16 Total: -1.00 -73.78 326.21 2.70 -71.08 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: -0.24 Total: 35.76 kcal Atomic # 6 Polarization: -42.55 SS G_CDS: 3.73 Total: -38.81 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -1.33 Total: -67.83 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -1.49 Total: -42.18 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.98 kcal Total: -73.78 2.70 -71.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899982636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.121 kcal (2) G-P(sol) polarization free energy of solvation -73.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds