Wall clock time and date at job start Mon Mar 30 2020 02:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46960 * 2 1 4 4 H 1.08989 * 109.47662 * 304.99787 * 3 2 1 5 5 O 1.42902 * 109.47077 * 65.00528 * 3 2 1 6 6 C 1.53001 * 109.46939 * 184.99923 * 3 2 1 7 7 H 1.09001 * 109.47493 * 300.00223 * 6 3 2 8 8 C 1.53003 * 109.46986 * 60.00224 * 6 3 2 9 9 C 1.50697 * 109.47368 * 180.02562 * 6 3 2 10 10 O 1.21286 * 119.99700 * 0.02562 * 9 6 3 11 11 N 1.34781 * 120.00356 * 180.02562 * 9 6 3 12 12 C 1.39234 * 120.00293 * 185.18193 * 11 9 6 13 13 C 1.39481 * 119.83023 * 324.06670 * 12 11 9 14 14 C 1.36377 * 120.16631 * 180.29536 * 13 12 11 15 15 C 1.40873 * 119.82718 * 359.48081 * 14 13 12 16 16 C 1.41156 * 120.16546 * 180.24887 * 15 14 13 17 17 H 1.07999 * 120.00291 * 205.00129 * 16 15 14 18 18 C 1.39905 * 119.99783 * 25.00669 * 16 15 14 19 19 N 1.30873 * 120.00467 * 17.74758 * 18 16 15 20 20 Si 1.86800 * 119.99797 * 197.75126 * 18 16 15 21 21 H 1.48502 * 109.47150 * 94.98409 * 20 18 16 22 22 H 1.48503 * 109.47177 * 214.97819 * 20 18 16 23 23 H 1.48492 * 109.47400 * 334.98066 * 20 18 16 24 24 C 1.40872 * 119.67251 * 0.51606 * 15 14 13 25 25 C 1.36371 * 119.82617 * 359.73836 * 24 15 14 26 26 H 1.09003 * 109.47320 * 300.00071 * 1 2 3 27 27 H 1.09005 * 109.47177 * 59.99913 * 1 2 3 28 28 H 1.08996 * 109.47332 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46835 * 240.00504 * 2 1 3 30 30 H 1.08996 * 109.47212 * 120.00208 * 2 1 3 31 31 H 0.96701 * 114.00085 * 59.99925 * 5 3 2 32 32 H 1.09007 * 109.47231 * 179.97438 * 8 6 3 33 33 H 1.08997 * 109.46961 * 299.99837 * 8 6 3 34 34 H 1.09002 * 109.46880 * 60.00240 * 8 6 3 35 35 H 0.96997 * 119.99605 * 5.18434 * 11 9 6 36 36 H 1.07998 * 119.91904 * 0.02660 * 13 12 11 37 37 H 1.08002 * 120.08845 * 179.70181 * 14 13 12 38 38 H 0.96990 * 120.00224 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.08468 * 179.70863 * 24 15 14 40 40 H 1.08002 * 119.91516 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 8 1.6620 2.0813 1.2211 6 6 3.5648 1.4443 -0.1257 7 1 3.9994 0.9053 0.7161 8 6 3.9695 0.7603 -1.4331 9 6 4.0672 2.8650 -0.1251 10 8 3.2829 3.7856 -0.0327 11 7 5.3881 3.1128 -0.2272 12 6 5.8622 4.4175 -0.1184 13 6 5.1123 5.4736 -0.6358 14 6 5.5730 6.7535 -0.5383 15 6 6.8044 7.0085 0.0966 16 6 7.2855 8.3310 0.2062 17 1 8.3453 8.5137 0.3055 18 6 6.3894 9.4053 0.1861 19 7 5.1171 9.2006 0.4149 20 14 7.0088 11.1318 -0.1673 21 1 6.8471 11.4294 -1.6131 22 1 6.2272 12.1110 0.6300 23 1 8.4443 11.2276 0.2003 24 6 7.5560 5.9366 0.6168 25 6 7.0848 4.6616 0.5071 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.0142 1.6541 2.0139 32 1 5.0559 0.7620 -1.5229 33 1 3.6062 -0.2673 -1.4331 34 1 3.5349 1.2994 -2.2749 35 1 6.0084 2.3823 -0.3766 36 1 4.1666 5.2769 -1.1187 37 1 4.9936 7.5699 -0.9437 38 1 4.4960 9.9454 0.4014 39 1 8.5031 6.1240 1.1007 40 1 7.6596 3.8387 0.9057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899982637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:01 Heat of formation + Delta-G solvation = -81.495006 kcal Electronic energy + Delta-G solvation = -21273.740863 eV Core-core repulsion = 18052.588633 eV Total energy + Delta-G solvation = -3221.152230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.98344 -38.02354 -36.81723 -34.36838 -33.73090 -32.84445 -31.93419 -29.44797 -28.86506 -26.04617 -25.31219 -23.71473 -21.62005 -21.20021 -20.60215 -19.25387 -17.31995 -17.14095 -16.53990 -16.07158 -15.43413 -15.18583 -14.72846 -14.52405 -13.91712 -13.80606 -13.44801 -12.97583 -12.69279 -12.64017 -12.34001 -12.12489 -12.01817 -11.93044 -11.80406 -11.56077 -11.35349 -11.10600 -11.04073 -10.89011 -10.65873 -10.47740 -9.91446 -9.87180 -9.75875 -9.35873 -8.94199 -8.57503 -7.47915 -6.97165 -6.70046 -4.25438 2.65663 3.04632 3.10070 3.13879 3.15330 3.42206 3.73814 3.96376 4.43619 4.50378 4.67533 4.75764 4.93689 4.97880 5.11783 5.20780 5.42678 5.46816 5.59186 5.63806 5.73229 5.77197 5.83086 5.96272 6.11584 6.17698 6.18978 6.45167 6.87787 7.04804 7.10198 7.20477 7.34713 7.64567 7.73683 7.77457 8.03643 8.09865 8.27190 8.38101 8.67562 8.88204 8.92456 9.07223 10.22965 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032958 B = 0.003651 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.366281 B = 7667.913359 C = 8211.216148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.158 4.158 3 C 0.128 3.872 4 H 0.102 0.898 5 O -0.540 6.540 6 C -0.144 4.144 7 H 0.093 0.907 8 C -0.145 4.145 9 C 0.500 3.500 10 O -0.508 6.508 11 N -0.656 5.656 12 C -0.007 4.007 13 C -0.085 4.085 14 C -0.158 4.158 15 C 0.106 3.894 16 C -0.461 4.461 17 H 0.078 0.922 18 C 0.074 3.926 19 N -0.788 5.788 20 Si 0.908 3.092 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.217 4.217 25 C -0.105 4.105 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.365 0.635 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.391 0.609 36 H 0.105 0.895 37 H 0.119 0.881 38 H 0.281 0.719 39 H 0.094 0.906 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.454 -16.413 -1.983 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.196 4.196 3 C 0.068 3.932 4 H 0.120 0.880 5 O -0.343 6.343 6 C -0.166 4.166 7 H 0.111 0.889 8 C -0.203 4.203 9 C 0.285 3.715 10 O -0.383 6.383 11 N -0.299 5.299 12 C -0.099 4.099 13 C -0.105 4.105 14 C -0.177 4.177 15 C 0.103 3.897 16 C -0.490 4.490 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.412 5.412 20 Si 0.733 3.267 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.237 4.237 25 C -0.126 4.126 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.210 0.790 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.224 0.776 36 H 0.123 0.877 37 H 0.136 0.864 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.593 -15.220 -2.278 16.060 hybrid contribution 0.937 -0.044 0.281 0.979 sum -3.656 -15.264 -1.997 15.822 Atomic orbital electron populations 1.21691 0.95082 1.01134 1.02671 1.22349 0.97242 0.97356 1.02653 1.21713 0.90498 0.92069 0.88956 0.88027 1.86769 1.75946 1.56813 1.14766 1.22126 0.98763 0.95052 1.00704 0.88854 1.21812 1.01968 1.00558 0.95961 1.20330 0.82717 0.90581 0.77863 1.90754 1.54886 1.45441 1.47172 1.42989 1.07156 1.08259 1.71534 1.17190 0.97973 0.82828 1.11879 1.20544 0.98333 0.92477 0.99151 1.21000 0.98712 0.94861 1.03175 1.17667 0.91302 0.92622 0.88076 1.19551 0.94714 0.90473 1.44268 0.90409 1.25941 0.94487 1.01638 0.92336 1.69866 1.03685 1.34148 1.33543 0.86304 0.79998 0.81142 0.79286 1.19359 1.20301 1.18606 1.20536 1.02146 0.92348 1.08672 1.20052 0.95762 0.96390 1.00347 0.91973 0.92684 0.93049 0.90762 0.91778 0.78962 0.91866 0.91315 0.91779 0.77588 0.87662 0.86356 0.90794 0.88732 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.81 37.16 0.36 -0.94 16 2 C -0.16 -1.35 5.40 -26.73 -0.14 -1.50 16 3 C 0.13 1.54 2.09 -26.73 -0.06 1.48 16 4 H 0.10 1.43 8.10 -51.93 -0.42 1.01 16 5 O -0.54 -7.80 11.77 -53.51 -0.63 -8.43 16 6 C -0.14 -1.70 2.51 -91.77 -0.23 -1.93 16 7 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 8 C -0.15 -1.33 8.74 37.16 0.32 -1.00 16 9 C 0.50 8.86 6.84 -10.98 -0.08 8.78 16 10 O -0.51 -11.62 12.72 -12.73 -0.16 -11.78 16 11 N -0.66 -11.66 5.23 -9.74 -0.05 -11.71 16 12 C -0.01 -0.15 6.30 -83.57 -0.53 -0.68 16 13 C -0.09 -2.18 8.61 -39.79 -0.34 -2.53 16 14 C -0.16 -4.33 8.64 -39.26 -0.34 -4.67 16 15 C 0.11 2.90 5.57 -106.80 -0.59 2.30 16 16 C -0.46 -12.44 9.03 -37.85 -0.34 -12.78 16 17 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 18 C 0.07 1.91 5.13 -17.34 -0.09 1.83 16 19 N -0.79 -21.23 10.98 55.55 0.61 -20.62 16 20 Si 0.91 19.04 29.59 -169.99 -5.03 14.01 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 23 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 24 C -0.22 -5.37 9.74 -39.26 -0.38 -5.75 16 25 C -0.11 -2.36 9.90 -39.79 -0.39 -2.75 16 26 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.54 6.17 -51.93 -0.32 0.22 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.36 3.86 9.05 45.56 0.41 4.27 16 32 H 0.06 0.53 7.46 -51.93 -0.39 0.14 16 33 H 0.07 0.47 6.32 -51.93 -0.33 0.14 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.39 5.39 8.10 -40.82 -0.33 5.06 16 36 H 0.11 2.73 6.24 -52.49 -0.33 2.40 16 37 H 0.12 3.37 6.19 -52.49 -0.32 3.05 16 38 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 39 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 328.39 15.07 4.95 4.95 Total: -1.00 -32.64 328.39 -8.08 -40.72 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -4.94 Total: 12.98 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -2.83 Total: -20.12 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.56 Total: -32.33 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.79 Total: -20.21 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.64 -8.08 -40.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899982637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.772 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds